View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3571_high_14 (Length: 226)
Name: NF3571_high_14
Description: NF3571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3571_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 44858138 - 44858207
Alignment:
| Q |
7 |
tggtttcaccttgttcctcccaaaatgctagcacgcctcgccgcaaatcgtctcaaccagatccgtcaaa |
76 |
Q |
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| T |
44858138 |
tggtttcaccttgttcctcccaaaatgctagcacgcctcgccgcaaatcgtctcaaccagatccgtcaaa |
44858207 |
T |
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Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 44858307 - 44858357
Alignment:
| Q |
176 |
gcagccatcaagggctttctcaaccgctctcaattatgtaagtgttcttca |
226 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44858307 |
gcagccatcaagggctttctcaaccgctctcaattacgtaagtgttcttca |
44858357 |
T |
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