View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3571_high_3 (Length: 477)

Name: NF3571_high_3
Description: NF3571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3571_high_3
NF3571_high_3
[»] chr5 (22 HSPs)
chr5 (5-173)||(31680347-31680515)
chr5 (5-173)||(12278879-12279047)
chr5 (5-173)||(17332570-17332738)
chr5 (5-154)||(10033926-10034075)
chr5 (5-154)||(13817976-13818125)
chr5 (1-170)||(37254624-37254793)
chr5 (5-173)||(31501735-31501903)
chr5 (5-154)||(39434695-39434844)
chr5 (5-151)||(1776395-1776541)
chr5 (5-139)||(33430335-33430469)
chr5 (5-154)||(36293640-36293789)
chr5 (5-135)||(16155015-16155145)
chr5 (5-154)||(39657525-39657674)
chr5 (5-152)||(26283337-26283484)
chr5 (5-123)||(16333895-16334013)
chr5 (5-151)||(19985941-19986087)
chr5 (5-154)||(3155650-3155799)
chr5 (5-134)||(43068896-43069025)
chr5 (5-174)||(36291350-36291519)
chr5 (56-139)||(28801301-28801384)
chr5 (68-176)||(202616-202724)
chr5 (61-173)||(26543841-26543952)
[»] chr8 (15 HSPs)
chr8 (5-167)||(16788044-16788206)
chr8 (5-153)||(4404008-4404156)
chr8 (5-166)||(34136844-34137005)
chr8 (5-173)||(23402088-23402256)
chr8 (5-175)||(3648813-3648983)
chr8 (5-154)||(29728405-29728554)
chr8 (5-152)||(39914516-39914662)
chr8 (5-154)||(15838285-15838433)
chr8 (5-177)||(2729215-2729387)
chr8 (5-173)||(36408531-36408699)
chr8 (5-131)||(9877242-9877368)
chr8 (27-137)||(3435285-3435397)
chr8 (5-121)||(42230971-42231085)
chr8 (68-158)||(10397122-10397212)
chr8 (60-130)||(40470567-40470637)
[»] chr4 (44 HSPs)
chr4 (5-175)||(43143603-43143773)
chr4 (5-174)||(3292915-3293084)
chr4 (5-173)||(6690254-6690422)
chr4 (5-172)||(30216761-30216928)
chr4 (5-154)||(25930707-25930856)
chr4 (5-173)||(50205096-50205264)
chr4 (5-152)||(20129311-20129458)
chr4 (5-152)||(42333795-42333942)
chr4 (5-173)||(10352903-10353071)
chr4 (5-152)||(13012189-13012336)
chr4 (1-139)||(17511248-17511387)
chr4 (5-152)||(47500774-47500921)
chr4 (11-152)||(26439304-26439445)
chr4 (11-152)||(34407309-34407450)
chr4 (11-152)||(43355905-43356046)
chr4 (5-170)||(48989311-48989476)
chr4 (5-154)||(36382365-36382513)
chr4 (5-139)||(40529029-40529163)
chr4 (5-150)||(29319724-29319869)
chr4 (5-173)||(28877269-28877437)
chr4 (5-136)||(44156668-44156799)
chr4 (5-171)||(26448035-26448200)
chr4 (5-170)||(29996002-29996167)
chr4 (5-173)||(30077650-30077817)
chr4 (5-129)||(35545977-35546101)
chr4 (5-98)||(6235575-6235668)
chr4 (57-164)||(30109945-30110052)
chr4 (56-139)||(48129980-48130063)
chr4 (5-118)||(1817752-1817865)
chr4 (68-175)||(27363339-27363446)
chr4 (53-170)||(45194159-45194276)
chr4 (5-75)||(13392900-13392970)
chr4 (5-75)||(13396039-13396109)
chr4 (116-175)||(49908782-49908841)
chr4 (68-169)||(20113775-20113876)
chr4 (60-128)||(6254569-6254637)
chr4 (116-173)||(5517494-5517551)
chr4 (112-175)||(7769306-7769369)
chr4 (117-173)||(6212029-6212085)
chr4 (105-173)||(13392989-13393057)
chr4 (105-173)||(13396128-13396196)
chr4 (117-171)||(17554978-17555032)
chr4 (116-174)||(50720476-50720534)
chr4 (117-173)||(12680193-12680249)
[»] chr7 (21 HSPs)
chr7 (1-170)||(34389071-34389240)
chr7 (5-173)||(33685544-33685712)
chr7 (5-154)||(5555486-5555635)
chr7 (5-172)||(37002163-37002330)
chr7 (5-150)||(3114115-3114260)
chr7 (5-152)||(14777126-14777273)
chr7 (5-154)||(8394124-8394273)
chr7 (5-154)||(36630815-36630964)
chr7 (5-173)||(8867750-8867918)
chr7 (5-175)||(26624723-26624894)
chr7 (5-144)||(35090177-35090316)
chr7 (5-173)||(43184487-43184655)
chr7 (5-134)||(40920022-40920151)
chr7 (5-173)||(7002705-7002873)
chr7 (5-173)||(7048576-7048744)
chr7 (5-130)||(38638255-38638380)
chr7 (5-135)||(36658199-36658329)
chr7 (63-154)||(26502809-26502899)
chr7 (63-154)||(26589815-26589905)
chr7 (53-94)||(10868542-10868583)
chr7 (108-139)||(10876829-10876860)
[»] chr2 (23 HSPs)
chr2 (5-172)||(44084622-44084789)
chr2 (5-173)||(45418563-45418731)
chr2 (5-150)||(41251653-41251798)
chr2 (5-154)||(42439985-42440134)
chr2 (1-172)||(770975-771151)
chr2 (5-147)||(18981622-18981764)
chr2 (5-173)||(8147331-8147500)
chr2 (5-154)||(17445060-17445207)
chr2 (5-170)||(8059352-8059517)
chr2 (5-154)||(31581641-31581790)
chr2 (5-154)||(32127160-32127309)
chr2 (5-154)||(35962714-35962863)
chr2 (5-152)||(6403823-6403970)
chr2 (16-154)||(2958131-2958268)
chr2 (5-150)||(16405603-16405748)
chr2 (5-135)||(12756856-12756986)
chr2 (1-134)||(26162717-26162847)
chr2 (53-153)||(26237957-26238056)
chr2 (5-128)||(2285887-2286010)
chr2 (53-129)||(4555278-4555354)
chr2 (63-144)||(7072627-7072710)
chr2 (74-133)||(34905969-34906028)
chr2 (62-175)||(34523218-34523330)
[»] chr3 (20 HSPs)
chr3 (5-178)||(11018231-11018404)
chr3 (5-170)||(45182964-45183129)
chr3 (7-166)||(27935165-27935324)
chr3 (5-174)||(6930913-6931082)
chr3 (5-152)||(22968463-22968610)
chr3 (5-152)||(6269445-6269592)
chr3 (5-172)||(33040934-33041101)
chr3 (5-170)||(6503588-6503753)
chr3 (5-154)||(34084141-34084290)
chr3 (5-175)||(19565520-19565690)
chr3 (5-154)||(19390145-19390294)
chr3 (11-152)||(39771791-39771932)
chr3 (5-172)||(45335856-45336022)
chr3 (5-139)||(40081760-40081892)
chr3 (5-170)||(35514249-35514410)
chr3 (57-131)||(5135291-5135365)
chr3 (53-176)||(5354686-5354809)
chr3 (116-175)||(6890976-6891035)
chr3 (96-154)||(22922156-22922214)
chr3 (241-325)||(47508169-47508253)
[»] chr6 (14 HSPs)
chr6 (5-173)||(28996710-28996878)
chr6 (5-153)||(18339106-18339254)
chr6 (5-152)||(398618-398765)
chr6 (5-154)||(34948777-34948926)
chr6 (5-154)||(13837820-13837969)
chr6 (5-174)||(29743262-29743431)
chr6 (5-137)||(33229355-33229487)
chr6 (68-174)||(24697899-24698005)
chr6 (57-167)||(31028435-31028545)
chr6 (68-138)||(24695502-24695572)
chr6 (117-173)||(13646997-13647053)
chr6 (117-173)||(34385519-34385575)
chr6 (75-138)||(3050094-3050157)
chr6 (76-125)||(24072576-24072625)
[»] scaffold0154 (1 HSPs)
scaffold0154 (5-173)||(31460-31628)
[»] scaffold0069 (1 HSPs)
scaffold0069 (5-154)||(17841-17990)
[»] chr1 (15 HSPs)
chr1 (1-170)||(35907535-35907704)
chr1 (1-173)||(17445293-17445465)
chr1 (5-152)||(26144256-26144403)
chr1 (5-154)||(7433444-7433593)
chr1 (1-170)||(321392-321561)
chr1 (5-170)||(3828967-3829131)
chr1 (9-138)||(42310964-42311093)
chr1 (6-154)||(32982076-32982224)
chr1 (57-174)||(41972346-41972462)
chr1 (27-175)||(33489665-33489815)
chr1 (52-154)||(23313237-23313340)
chr1 (68-134)||(35951427-35951493)
chr1 (84-173)||(48901203-48901291)
chr1 (116-172)||(31866958-31867014)
chr1 (117-173)||(44352614-44352670)
[»] scaffold0502 (1 HSPs)
scaffold0502 (5-153)||(5230-5378)
[»] scaffold0002 (1 HSPs)
scaffold0002 (5-152)||(480476-480623)
[»] scaffold2142 (1 HSPs)
scaffold2142 (5-152)||(523-670)
[»] scaffold0041 (1 HSPs)
scaffold0041 (5-134)||(52944-53073)
[»] scaffold0769 (1 HSPs)
scaffold0769 (62-171)||(1259-1367)
[»] scaffold0012 (1 HSPs)
scaffold0012 (62-158)||(194023-194118)


Alignment Details
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 31680515 - 31680347
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  31680515 tgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtc 31680416  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    ||||| | ||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  31680415 taatgcggaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 31680347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 12278879 - 12279047
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||| ||| ||||||||| |||    
T  12278879 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcctttgggttgggtc 12278978  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| ||||| |||| ||||||||||||||    
T  12278979 taatgtgcaaaaattatcgatcgagtccgggcgaccgcccgggatcgccgggcggtgaaaccgcccctg 12279047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 17332570 - 17332738
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| | ||| |||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  17332570 tgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtc 17332669  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    |||| |||||||||||||||||||||||||||||  ||||||||||||| |||| ||||||||||||||    
T  17332670 taatatgcaaaaattatcgatcgagcccgggcgaacgcccggggtcgccgggcggtgaaaccgcccctg 17332738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 10034075 - 10033926
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||| | ||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10034075 tgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtc 10033976  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    ||||||||||||||||||||||||||||||||||  | ||||||||||||    
T  10033975 taatgtgcaaaaattatcgatcgagcccgggcgatcgtccggggtcgcca 10033926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 13818125 - 13817976
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||| ||||||||||||||||| | ||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13818125 tgtgctaaataaatttccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtc 13818026  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  13818025 taatgtgcaaaaattatcgatcgagcccgagcgaccgcccggggtcgcca 13817976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 37254793 - 37254624
Alignment:
Q  1 ataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttg 100  Q
    |||||||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||| | |||||||||||    
T  37254793 ataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttg 37254694  T
Q  101 agtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 170  Q
     |||||||||||||||||||||||||||||| ||||||| ||| |||||||||  ||| |||||||||||    
T  37254693 ggtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccgagcggtgaaaccgccc 37254624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 31501735 - 31501903
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||| | |||||||||||| |  ||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  31501735 tgtgctaaataaaatttcgagacctatttgcgtgcgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtc 31501834  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||||| |||| ||||||||||||||    
T  31501835 taatgtgcaaaaattatcgatcgagcccgggcaatcgcccggggtcgccgggcggtgaaaccgcccctg 31501903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 39434844 - 39434695
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||| ||||||||||| ||| ||| |||||| | |||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  39434844 tgtgctaaataaaattcaaagacctatttacatgtgacaattttcagattgcccaaatttttcattttgtaaatgtgttaatgggcttttgggttgagtc 39434745  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    ||||||| ||||||||||||||||||||||||||| |||| |||||||||    
T  39434744 taatgtgaaaaaattatcgatcgagcccgggcgaccgcccagggtcgcca 39434695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 1776395 - 1776541
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||||| |||||| |     
T  1776395 tgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatggactttttggttgactt 1776494  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcg 151  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||    
T  1776495 taatgtacaaaaattatcgatcgagcccgggcgaccgcccggggtcg 1776541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 33430469 - 33430335
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  33430469 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtc 33430370  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgac 139  Q
    ||||| |||||||||||||||||||||||||||||    
T  33430369 taatgcgcaaaaattatcgatcgagcccgggcgac 33430335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 36293640 - 36293789
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||| | | ||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36293640 tgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtc 36293739  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    |||||| |||||||||||||||||| |||| |||| || |||||||||||    
T  36293740 taatgtacaaaaattatcgatcgagtccggacgaccgctcggggtcgcca 36293789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 16155145 - 16155015
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||| | ||| |||||| | |||||| |||||||||||||| ||| |||||||||||||||||||||||||||    
T  16155145 tgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcctaaatttttctttttataaatgtgttaatgggcttttgggttgagtc 16155046  T
Q  105 taatgtgcaaaaattatcgatcgagcccggg 135  Q
    |||||||||||||||||||||||||||||||    
T  16155045 taatgtgcaaaaattatcgatcgagcccggg 16155015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 39657525 - 39657674
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||| | ||| |||||| | ||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  39657525 tgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgagcttttgggttgagtc 39657624  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    |||||||||||||||||| ||||||||||  |||| | | ||||||||||    
T  39657625 taatgtgcaaaaattatcaatcgagcccgaacgaccgtctggggtcgcca 39657674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 26283337 - 26283484
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||| ||||||||||||||||||||||| | | ||| |||||| | ||||||||||||||||||||| ||| ||||||||||  ||||| |||||||||    
T  26283337 tgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgaactttttggttgagtc 26283436  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  26283437 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgc 26283484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 16333895 - 16334013
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||| | ||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  16333895 tgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgaatc 16333994  T
Q  105 taatgtgcaaaaattatcg 123  Q
    |||||||||||||||||||    
T  16333995 taatgtgcaaaaattatcg 16334013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 19986087 - 19985941
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||| ||||||||||| |||||||||||||| | ||| |||||||| ||| ||||||||||||||||||||| |||| |||||| |||||||||||| ||    
T  19986087 tgtgttaaataaaatttcaagacctatttgcgtgtgataatttttagattacccaaatttttctttttgtaaatgtgctaatggacttttgggttgaatc 19985988  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcg 151  Q
    |||||||||||||||||||||||||| ||| |||| ||||| |||||    
T  19985987 taatgtgcaaaaattatcgatcgagctcggacgaccgcccgaggtcg 19985941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 3155650 - 3155799
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||||||| |||||||| | ||| |||||| | |||| |||||||||||||||| ||| ||||||||||| ||||| |||||||||    
T  3155650 tgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatggacttttaggttgagtc 3155749  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
     |||||||||||||||| ||||||||||| ||||| ||||||| ||||||    
T  3155750 gaatgtgcaaaaattattgatcgagcccgagcgaccgcccgggatcgcca 3155799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 43069025 - 43068896
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||| ||||| ||| | |||||||| | ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||    
T  43069025 tgtgctaaataaaattccgagacttatttacatgtaagaattttcagattgcccaaatttttctttttgtaaatgtgttaatggacttttgggttgggtc 43068926  T
Q  105 taatgtgcaaaaattatcgatcgagcccgg 134  Q
    ||||||| ||||||||| ||||||||||||    
T  43068925 taatgtgaaaaaattattgatcgagcccgg 43068896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 36291519 - 36291350
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||| ||||||||||||  |||||||||||  | | | |||||| | ||||||||||||||||||||||||| ||||||||||  ||||| ||||   ||    
T  36291519 tgtgttaaataaaattctgagacctatttgtgtgtaataattttgagattgcccaaatttttctttttgtaaatgtgttaatgaacttttaggttagatc 36291420  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctgg 174  Q
    ||||||||||||||||| |||||| ||||| |||| |||||| |||| | |||| |||||||||||||||    
T  36291419 taatgtgcaaaaattattgatcgaacccggacgaccgcccggagtcggcgggcggtgaaaccgcccctgg 36291350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 28801384 - 28801301
Alignment:
Q  56 cccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 139  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||| |||||||    
T  28801384 cccaaatttttctttttgtaagtgtgttaatgggcttttggtttggatctaatgtgcaaaaattatcgatcgagccagggcgac 28801301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 202724 - 202616
Alignment:
Q  68 tttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccg 167  Q
    ||||||| ||||| ||||||||||||||||||    ||||||| || |||||||||||||||||||||||||  ||  |||||| | |||| ||||||||    
T  202724 tttttgttagtgtcttaatgggcttttgggttcgacctaatgtacacaaattatcgatcgagcccgggcgaccacctagggtcgtcgggcggtgaaaccg 202625  T
Q  168 cccctggtc 176  Q
    |||| ||||    
T  202624 cccccggtc 202616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 173
Target Start/End: Original strand, 26543841 - 26543952
Alignment:
Q  61 atttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgat 160  Q
    |||||| |||||| |||||||| ||||||| | |  |||| | ||||||||   ||||||  ||||||||||||||||| ||||||||||||| |||| |    
T  26543841 atttttttttttg-aagtgtgtaaatgggcctatatgttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggt 26543939  T
Q  161 gaaaccgcccctg 173  Q
     ||||||||||||    
T  26543940 aaaaccgcccctg 26543952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 123; Significance: 5e-63; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 5 - 167
Target Start/End: Original strand, 16788044 - 16788206
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||| | ||||| |||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16788044 tgtgctaaataaaattccaagacctatttgcgtgtgagagttttaagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtc 16788143  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccg 167  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||    
T  16788144 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggttgccgggcaatgaaaccg 16788206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 4404156 - 4404008
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  4404156 tgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttgagtc 4404057  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcc 153  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  4404056 taatgtgcaaaaattatcgatcgagcccgggcgaccgcctggggtcgcc 4404008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 5 - 166
Target Start/End: Original strand, 34136844 - 34137005
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||| | |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  34136844 tgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtc 34136943  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaacc 166  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||| || |||||||    
T  34136944 taatgtgcaaaaattatcgatcgagcccgggcgaccgctcggggtcgccagacggtgaaacc 34137005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 23402256 - 23402088
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||| ||||||||||| | |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  23402256 tgtgttaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtc 23402157  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  23402156 taatatgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 23402088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 3648813 - 3648983
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||||| ||||| |||| | ||| |||||| | |||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  3648813 tgtgctaaataaaattccaaaacctacttgcgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgttaatgggcttttgggttgagtc 3648912  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggt 175  Q
    ||||||| ||||||||||||||||||||||||||||| || || ||||||  || |  |||||||||||||    
T  3648913 taatgtgaaaaaattatcgatcgagcccgggcgactgtcccggatcgccatacggtagaaccgcccctggt 3648983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 29728405 - 29728554
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||| ||||||||||||| | | | |||||| | ||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  29728405 tgtgctaaataaaattcgaagacctatttgcgtgtcacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgagcttttgggttgagtc 29728504  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    |||||||||||| ||||||||||||| |||||||| | ||||||||||||    
T  29728505 taatgtgcaaaatttatcgatcgagcacgggcgaccgtccggggtcgcca 29728554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 39914662 - 39914516
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||| ||||||||||||||||||||||| | | ||| |||||| ||||||||||||||||| ||||| ||| |||||||||| |||||| |||||||||    
T  39914662 tgtgccaaataaaattccaagacctatttacttgtgacaattttcaaattgcccaaattttt-tttttataaatgtgttaatgagctttttggttgagtc 39914564  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39914563 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 39914516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 15838433 - 15838285
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||| | ||| |||||| | |||||||||||||||||||| |||| ||||||||||| ||||| ||||||||     
T  15838433 tgtgctaaataaaattccaagacctatttgcgtgtgaaaattttcagattgcccaaatttttctttt-gtaaatgtgttaatggactttttggttgagtt 15838335  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||||||    
T  15838334 taatgtgcaaaaattatcaatcgagcccgggtgaccgcccggggtcgcca 15838285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 5 - 177
Target Start/End: Original strand, 2729215 - 2729387
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||   |||||||||||| ||||||| |||| |||||||| |||  ||||||||| ||||||||||||||||||||||| |||  |     
T  2729215 tgtgctaaataaaattttgagacctatttgcgtatgagagttttcaaattgccaaaaaatttctttttataagtgtgttaatgggcttttggattggatt 2729314  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggtca 177  Q
    ||||||| ||||||||||||||||||||||||| | ||||||||||||| |||| ||||||||||||| ||||    
T  2729315 taatgtgtaaaaattatcgatcgagcccgggcgtccgcccggggtcgccgggcggtgaaaccgccccttgtca 2729387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 36408699 - 36408531
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||| ||||||||||||  ||||||||| || | | |||||||| |||||||| ||| |||||||||||||| ||||||||||| |||||||||||  ||    
T  36408699 tgtgttaaataaaattctgagacctattagcgtgtaagaattttcaaattgccaaaaattttctttttgtaaatgtgttaatggacttttgggttggatc 36408600  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||||| ||||||    
T  36408599 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgccgggcggtgaaaccacccctg 36408531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 9877368 - 9877242
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||| | |||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||| | ||||||||||  |||    
T  9877368 tgtgctaaataaaatttcgagacctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttaggtc 9877269  T
Q  105 taatgtgcaaaaattatcgatcgagcc 131  Q
    |||||||||||||||||| ||||||||    
T  9877268 taatgtgcaaaaattatcaatcgagcc 9877242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 3435397 - 3435285
Alignment:
Q  27 cctatttgcatatgagaatttttaaatt--gcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcga 124  Q
    ||||||||| | |||||||||| | |||  ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  3435397 cctatttgcgtttgagaattttcagattttgcccaaatttttctttttgtaagtgtgttaatgggtttttgggttgggtctaatgtgcaaaaattatcga 3435298  T
Q  125 tcgagcccgggcg 137  Q
    || ||||||||||    
T  3435297 tcaagcccgggcg 3435285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 42231085 - 42230971
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||| |||||| ||||  |     
T  42231085 tgtgctaaataaaattctgagacctatttgcatatgagaattttcaaattgcccaaatttttctttttgtaa--gtgttaatggacttttgagttggatt 42230988  T
Q  105 taatgtgcaaaaattat 121  Q
    |||||||||||||||||    
T  42230987 taatgtgcaaaaattat 42230971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 10397122 - 10397212
Alignment:
Q  68 tttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcg 158  Q
    ||||| ||| ||||||||| ||||||||||||||  |||||||| | ||||||||||| |||||||||||| ||||||| |||||| ||||    
T  10397122 tttttttaactgtgttaatcggcttttgggttgaacctaatgtgaagaaattatcgattgagcccgggcgagtgcccggagtcgccgggcg 10397212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 40470567 - 40470637
Alignment:
Q  60 aatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagc 130  Q
    ||||||| ||||| ||||||||||||||| ||||||  ||| |||||||||||||||||||||||||||||    
T  40470567 aatttttttttttataagtgtgttaatggacttttgatttgggtctaatgtgcaaaaattatcgatcgagc 40470637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 5e-63; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 43143603 - 43143773
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43143603 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtc 43143702  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggt 175  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| | | || ||||||||||| ||||    
T  43143703 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcggacggtgaaaccgcccatggt 43143773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 5 - 174
Target Start/End: Original strand, 3292915 - 3293084
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  3292915 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtc 3293014  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctgg 174  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||| |  |||| |||||||||||||||    
T  3293015 taatgggcaaaaattatcgatcgagcccgggcgaccgcccggggtcactgggcggtgaaaccgcccctgg 3293084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 6690254 - 6690422
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||| | |||||||||||| | |||||||||| |  |||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  6690254 tgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagtttgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtc 6690353  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  6690354 taatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 6690422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 5 - 172
Target Start/End: Original strand, 30216761 - 30216928
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| ||| |||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||  |||||||||||| |||    
T  30216761 tgtgctaaataaaattccgagatctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattagcttttgggttgggtc 30216860  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccct 172  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| | || |||| ||||||||    
T  30216861 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaatccgcccct 30216928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 25930856 - 25930707
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  25930856 tgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtt 25930757  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    ||||||||||||||||| ||||||||||||||||| |||| |||||||||    
T  25930756 taatgtgcaaaaattatagatcgagcccgggcgaccgcccagggtcgcca 25930707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 50205096 - 50205264
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||| | |||||||||| | |||| |||| ||||||||||||||||||||||||| |||||||||||||  ||    
T  50205096 tgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgtccaattttttctttttgtaagtgtgttaattggcttttgggttggatc 50205195  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    |||||||||||||||||||||||||| |||||||| ||||||| ||||| | || ||||||||||||||    
T  50205196 taatgtgcaaaaattatcgatcgagctcgggcgaccgcccgggatcgccggacggtgaaaccgcccctg 50205264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 20129458 - 20129311
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||| ||||||||||| ||||||||||| | | ||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20129458 tgtgccaaataaaattctaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtc 20129359  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20129358 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 20129311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 42333795 - 42333942
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42333795 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtc 42333894  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    ||||||||||||||||||||| |||||||| |||| ||||||| ||||    
T  42333895 taatgtgcaaaaattatcgattgagcccggacgaccgcccgggatcgc 42333942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 10352903 - 10353071
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| | | |||||||| | |||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||    
T  10352903 tgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttccttttgtaaatgtgttaatggactttttggttgggtc 10353002  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    ||||||||||||||||||||| ||||||||||||| ||| ||||||||| | || ||||||||||||||    
T  10353003 taatgtgcaaaaattatcgattgagcccgggcgaccgccaggggtcgccggacggtgaaaccgcccctg 10353071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 13012336 - 13012189
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||| ||||||||||||||||||||||| | | ||| |||||| ||||||||||||||||||||||| ||| |||||||||| |||||| |||||| ||    
T  13012336 tgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttgaatc 13012237  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13012236 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 13012189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 17511248 - 17511387
Alignment:
Q  1 ataatgtgctaaataaaatt-ccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggtt 99  Q
    |||||||||||||||||||| ||||||||||||||| | | | |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17511248 ataatgtgctaaataaaatttccaagacctatttgcgtgtaacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggtt 17511347  T
Q  100 gagtctaatgtgcaaaaattatcgatcgagcccgggcgac 139  Q
    |||||||||||||||||||||||||||||| | |||||||    
T  17511348 gagtctaatgtgcaaaaattatcgatcgagtctgggcgac 17511387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 47500921 - 47500774
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||| ||||||||||||||||||||||| | | ||| |||||| ||||||||||||||||||||||  ||| |||||||||| |||||| |||||||||    
T  47500921 tgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttcataaatgtgttaatgagctttttggttgagtc 47500822  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47500821 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 47500774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 26439304 - 26439445
Alignment:
Q  11 aaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgt 110  Q
    |||||||||| |||||||||||| | | ||| |||||| | ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  26439304 aaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgt 26439403  T
Q  111 gcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  26439404 gcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 26439445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 34407309 - 34407450
Alignment:
Q  11 aaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgt 110  Q
    |||||||||| |||||||||||| | | ||| |||||| | ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  34407309 aaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgt 34407408  T
Q  111 gcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  34407409 gcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 34407450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 43356046 - 43355905
Alignment:
Q  11 aaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgt 110  Q
    |||||||||| |||||||||||| | | ||| |||||| | ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  43356046 aaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgt 43355947  T
Q  111 gcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  43355946 gcaaaaattatcgaccgagcccgggcgactgcctggggtcgc 43355905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 48989476 - 48989311
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||| |||| ||     
T  48989476 tgtgctaaataaaattccgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatggacttttgagttgggtt 48989377  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 170  Q
    |||||||||||||||||||||||| |||||  ||| |||||| |||| | |||| |||||| ||||    
T  48989376 taatgtgcaaaaattatcgatcgaacccggttgaccgcccggagtcgtcgggcggtgaaactgccc 48989311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 36382365 - 36382513
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||| | ||| |||||| | |||| ||||||||||||||| |||| ||||||||||| ||||| ||||||||     
T  36382365 tgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgtccaaatttttctttt-gtaaatgtgttaatggactttttggttgagtt 36382463  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  36382464 taatgtgcaaaaattatggatcgagcccgggcgaccgcccggggtcgcca 36382513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 40529163 - 40529029
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||||| ||| |||||| |||||| |||||||||||||||||||| |||||||||| | |||| ||||||||     
T  40529163 tgtgctaaataaaattccaagacctatttgcatgtgacaattttcaaattgtccaaatttttctttttgtaaatgtgttaatgagtttttaggttgagtt 40529064  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgac 139  Q
    ||||||||||||||||||||||||| |||| ||||    
T  40529063 taatgtgcaaaaattatcgatcgagtccggacgac 40529029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 29319724 - 29319869
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||| ||||||  | ||| |||||| | ||||| ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  29319724 tgtgctaaataaaattccaagacttatttgtgtgtgacaattttcagattgctcaaatttttctttttgtaaatgtgttaatgggattttgggttgagtc 29319823  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtc 150  Q
    ||||||||||||||||||||||||||| || |||| ||| ||||||    
T  29319824 taatgtgcaaaaattatcgatcgagcctggacgaccgccaggggtc 29319869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 28877269 - 28877437
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| | |||||||||||| ||| ||||||||||||||||| |||| ||||||||  |||||| |||||| ||    
T  28877269 tgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagatttcccaaatttttctttttataagcgtgttaattagcttttaggttgaatc 28877368  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    |||||||||||||||||||||| |||||  ||||| || |||||||  | | || ||||||||||||||    
T  28877369 taatgtgcaaaaattatcgatctagcccaagcgaccgcacggggtcatcggacggtgaaaccgcccctg 28877437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 44156799 - 44156668
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| |  ||||||||| | |||| ||||| |||||||||||||||||||||||| ||||||||||||| |||    
T  44156799 tgtgctaaataaaattccgagacctatttgcgtgagagaattttcagattgtccaaaattttctttttgtaagtgtgttaattggcttttgggttgggtc 44156700  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggc 136  Q
    ||||||||||||||||||| | ||||||||||    
T  44156699 taatgtgcaaaaattatcggttgagcccgggc 44156668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 5 - 171
Target Start/End: Complemental strand, 26448200 - 26448035
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| | |||||||||  |||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||   |     
T  26448200 tgtgctaaataaaattccgaaacctatttgtgtatgagaattttcagattgcccaaattttt-tttttgtaagtgtgttaatggacttttgggttagatt 26448102  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccc 171  Q
    ||||||||||||||||||||||||| |||| |||  || ||| |||||| |||| ||||||||||||    
T  26448101 taatgtgcaaaaattatcgatcgagtccggacgatcgcacggagtcgccgggcggtgaaaccgcccc 26448035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 5 - 170
Target Start/End: Original strand, 29996002 - 29996167
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||| ||||||||||| ||| |||||||| |   |||||||| | |||||||||||||||||||| |||| ||||||||||| ||||| |||||||||    
T  29996002 tgtgcttaataaaattccgagaactatttgcgtgcaagaattttcagattgcccaaatttttcttttcgtaaatgtgttaatggactttttggttgagtc 29996101  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 170  Q
    |||||| |||||||||||||||||| |||| |||| | ||||| ||| | |||| |||||||||||    
T  29996102 taatgtacaaaaattatcgatcgagtccggacgaccgtccgggatcgtcgggcggtgaaaccgccc 29996167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 30077650 - 30077817
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||| |||||||||||||  | | | |||||| | |||| |||||||||||||||||||| ||||||||||  ||||| ||||| |||    
T  30077650 tgtgctaaataaaatttcaagacctatttgtgtgtaaaaattttcagattgtccaaatttttctttttgtaaatgtgttaatgaactttttggttgggtc 30077749  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    |||||||||||| |||||||| ||||| ||||||| ||||| ||||| | |||| ||||||||||||||    
T  30077750 taatgtgcaaaatttatcgattgagcctgggcgaccgcccgaggtcg-cgggcggtgaaaccgcccctg 30077817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 35546101 - 35545977
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||  ||||| |||||| | |||||||||| | |||||||||| |||||||||||||||||||||||| ||||||||||||| |||    
T  35546101 tgtgctaaataaaattcagagacccatttgcgtgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaattggcttttgggttgggtc 35546002  T
Q  105 taatgtgcaaaaattatcgatcgag 129  Q
    | ||| ||||||||| |||||||||    
T  35546001 tgatgcgcaaaaattgtcgatcgag 35545977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 6235668 - 6235575
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggt 98  Q
    ||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  6235668 tgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatggacttttgggt 6235575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 30110052 - 30109945
Alignment:
Q  57 ccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccagg 156  Q
    |||||||||||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||||||||| ||||||||| | ||||||||| | ||    
T  30110052 ccaaatttttctttttgtaagtgtgttaatggtctttgggtttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgtccggggtcgtcggg 30109953  T
Q  157 cgatgaaa 164  Q
    || |||||    
T  30109952 cggtgaaa 30109945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 48130063 - 48129980
Alignment:
Q  56 cccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 139  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  48130063 cccaaatttttctttttgtaagtgtgttaatgagcttttgggttgggtctaatatgcaaaaattatcgatcgagcccggtcgac 48129980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 1817865 - 1817752
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||| ||||||||||||| |||||||||||| | | |||||||||| ||||||||||||||||||||| ||| ||| ||||||| ||||||| |||  ||    
T  1817865 tgtgttaaataaaattccgagacctatttgcgtgtaagaatttttagattgcccaaatttttctttttataaatgtattaatggacttttggattggatc 1817766  T
Q  105 taatgtgcaaaaat 118  Q
    ||||||||||||||    
T  1817765 taatgtgcaaaaat 1817752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 27363446 - 27363339
Alignment:
Q  68 tttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccg 167  Q
    ||||||||||||||||||||||||||||||||| | ||||| ||||||||   ||||||||||||||||||| ||||| ||||||||  || | ||||||    
T  27363446 tttttgtaagtgtgttaatgggcttttgggttgggcctaatatgcaaaaaaattcgatcgagcccgggcgaccgcccgaggtcgccatacggtaaaaccg 27363347  T
Q  168 cccctggt 175  Q
    ||||||||    
T  27363346 cccctggt 27363339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 53 - 170
Target Start/End: Complemental strand, 45194276 - 45194159
Alignment:
Q  53 ttgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    ||||||||  |||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||| |  ||| |||||||     
T  45194276 ttgcccaatattttttttttgtaagtgtgttaatggacttttgggttgagtttaatgtgcaaaaattattgatcgagtccgggcaatcgcctggggtcgt 45194177  T
Q  153 caggcgatgaaaccgccc 170  Q
    | |||| |||||| ||||    
T  45194176 cgggcggtgaaactgccc 45194159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 13392900 - 13392970
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgta 75  Q
    |||||||||||||||| | |||||||||||| | |||||||||||| ||||||||||||||||||||||||    
T  13392900 tgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgta 13392970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 13396039 - 13396109
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgta 75  Q
    |||||||||||||||| | |||||||||||| | |||||||||||| ||||||||||||||||||||||||    
T  13396039 tgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgta 13396109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 49908782 - 49908841
Alignment:
Q  116 aattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggt 175  Q
    |||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||    
T  49908782 aattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctggt 49908841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 20113876 - 20113775
Alignment:
Q  68 tttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccg 167  Q
    ||||| ||||||||||||| ||||||||||||||  |||||||  | ||||||||||| |||  ||||||| || |||||||||||||||| || |||||    
T  20113876 tttttttaagtgtgttaatcggcttttgggttgaacctaatgtaaagaaattatcgattgagttcgggcgagtgtccggggtcgccaggcggtggaaccg 20113777  T
Q  168 cc 169  Q
    ||    
T  20113776 cc 20113775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 6254637 - 6254569
Alignment:
Q  60 aatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcga 128  Q
    ||||||| |||||| |||||||||||| | ||||||||||| || ||||||||||||||||||||||||    
T  6254637 aatttttttttttgcaagtgtgttaattgtcttttgggttgggtttaatgtgcaaaaattatcgatcga 6254569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 5517494 - 5517551
Alignment:
Q  116 aattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    ||||||||||||||||| |||||| ||||||||||||| |||| ||||||||||||||    
T  5517494 aattatcgatcgagcccaggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 5517551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 7769369 - 7769306
Alignment:
Q  112 caaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggt 175  Q
    |||||||||||||||||||||||||||| ||| ||||||||| | || ||||||||||| ||||    
T  7769369 caaaaattatcgatcgagcccgggcgaccgcctggggtcgccggacggtgaaaccgcccatggt 7769306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 6212029 - 6212085
Alignment:
Q  117 attatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    |||||||||||||| |||||||| ||||| ||||||| | || ||||||||||||||    
T  6212029 attatcgatcgagctcgggcgaccgcccgaggtcgccggacggtgaaaccgcccctg 6212085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 13392989 - 13393057
Alignment:
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    |||| ||||||| | |||||| ||||||||||||| | ||||||||||  |||| ||||||||||||||    
T  13392989 taatatgcaaaagtcatcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgcccctg 13393057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 13396128 - 13396196
Alignment:
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    |||| ||||||| | |||||| ||||||||||||| | ||||||||||  |||| ||||||||||||||    
T  13396128 taatatgcaaaagtcatcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgcccctg 13396196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 17555032 - 17554978
Alignment:
Q  117 attatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccc 171  Q
    |||||||||||||||||||||||  |||||||||| | | || ||||||||||||    
T  17555032 attatcgatcgagcccgggcgaccacccggggtcgtcggacggtgaaaccgcccc 17554978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 50720476 - 50720534
Alignment:
Q  116 aattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctgg 174  Q
    |||||| ||| ||||||||||||| ||||| ||||||| |||| |||||||||| ||||    
T  50720476 aattattgattgagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgcctctgg 50720534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 12680193 - 12680249
Alignment:
Q  117 attatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    |||||||||||||||||||| || ||| ||||| ||  |||| ||||||||||||||    
T  12680193 attatcgatcgagcccgggccaccgcctggggttgctgggcggtgaaaccgcccctg 12680249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 34389071 - 34389240
Alignment:
Q  1 ataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttg 100  Q
    |||||||||||||||||||||| |||||||||||| | |||||||||| | |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  34389071 ataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattagcttttgggttg 34389170  T
Q  101 agtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 170  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| |||||    
T  34389171 ggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaatcgccc 34389240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 33685712 - 33685544
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||   |||| ||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  33685712 tgtgctaaataaaattatgagacatatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgggtt 33685613  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| ||||||||||||||    
T  33685612 taatgtgcaaaaattatcgatcgagcccgagcgactgcctggggtcgccgggcggtgaaaccgcccctg 33685544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 5555635 - 5555486
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||  | ||| |||||| | ||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  5555635 tgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgcgttaatgggcttttgggttgagtc 5555536  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5555535 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcca 5555486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 5 - 172
Target Start/End: Original strand, 37002163 - 37002330
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||| | ||||||| ||| |||    
T  37002163 tgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggattgggtc 37002262  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccct 172  Q
    ||||||||||||||||||||||||| |||  |||| ||||||||||||| |||| |||||||||||||    
T  37002263 taatgtgcaaaaattatcgatcgagaccgaacgaccgcccggggtcgccgggcggtgaaaccgcccct 37002330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 3114115 - 3114260
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||  | ||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3114115 tgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtc 3114214  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtc 150  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||    
T  3114215 taatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtc 3114260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 14777126 - 14777273
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||| | | ||| |||||| | ||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  14777126 tgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgagcttttgggttgagtc 14777225  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  14777226 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgc 14777273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 8394273 - 8394124
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||| | | ||| |||||| | |||||||||||||||| |||||||| ||||||||||| ||||| ||||||||     
T  8394273 tgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttccttttgtaaatgtgttaatggactttttggttgagtt 8394174  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8394173 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcca 8394124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 36630964 - 36630815
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||| |||||||||||||||||||||| | ||| |||||| | ||||||||||||||||||||||||| ||||||||||| ||||| ||||||||     
T  36630964 tgtgctaactaaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatggactttttggttgagtt 36630865  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  36630864 taatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgcca 36630815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 8867750 - 8867918
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| | ||| ||||||   ||||||||||||||||||||||||| ||| ||||| ||||||||| ||| |||    
T  8867750 tgtgctaaataaaattccgagacctatttgcgtgtgaaaattttccgattgcccaaatttttctttttgtaaatgtattaattggcttttggattgggtc 8867849  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||||    
T  8867850 taatatgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaactgcccctg 8867918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 26624894 - 26624723
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| | |||||||||| | |||||||||||||||||||||||||||||||||||   ||||||| ||| |||    
T  26624894 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattaacttttggattgggtc 26624795  T
Q  105 taatgtgcaaaaattatcg-atcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggt 175  Q
    |||| |||||||||||||| ||||||||| |||||| ||||||||| ||| |||| ||||||||||||||||    
T  26624794 taatatgcaaaaattatcgaatcgagcccaggcgaccgcccggggttgccgggcggtgaaaccgcccctggt 26624723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 35090316 - 35090177
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| | |||||||||| | ||| ||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  35090316 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtc 35090217  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgccc 144  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  35090216 taatgtgcaaaaattattgatcgagcccgggcgaccgccc 35090177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 43184487 - 43184655
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||  |||||||||||| | |||||||||| | ||||||||||||||||||||||||||| ||||||| |||||||||||| ||||    
T  43184487 tgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaattggcttttgggttaagtc 43184586  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    | ||| | ||||||||||||||||||||| ||||| ||||||  ||||| |||| ||||||||||||||    
T  43184587 tgatgcgtaaaaattatcgatcgagcccgagcgaccgcccggaatcgccgggcggtgaaaccgcccctg 43184655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 5 - 134
Target Start/End: Original strand, 40920022 - 40920151
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||||| |||||||||| | |||| |||||||||||||||||||| ||||||||| |||||||||||| | ||    
T  40920022 tgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgttaattggcttttgggttaaatc 40920121  T
Q  105 taatgtgcaaaaattatcgatcgagcccgg 134  Q
    ||||||||||||||||||||||||||||||    
T  40920122 taatgtgcaaaaattatcgatcgagcccgg 40920151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 7002873 - 7002705
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||  ||||||||||| | |||||||||||| |||| |||||||||| |||||||| |||||||||| ||||||||||||| ||     
T  7002873 tgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttgtatgtgtgttaattggcttttgggttgggtg 7002774  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    ||||||  ||||||  ||||||||||||||||||| || |||||||||| |||| ||||||||||||||    
T  7002773 taatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgcccctg 7002705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 7048744 - 7048576
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||  ||||||||||| | |||||||||||| |||| |||||||||| |||||||| |||||||||| ||||||||||||| ||     
T  7048744 tgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttgtatgtgtgttaattggcttttgggttgggtg 7048645  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    ||||||  ||||||  ||||||||||||||||||| || |||||||||| |||| ||||||||||||||    
T  7048644 taatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgcccctg 7048576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 38638255 - 38638380
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||| | |||||||||||  ||    
T  38638255 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttggatc 38638354  T
Q  105 taatgtgcaaaaattatcgatcgagc 130  Q
    |||||||||||||||||| |||||||    
T  38638355 taatgtgcaaaaattatcaatcgagc 38638380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 36658329 - 36658199
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||| ||||||| ||| ||||||| ||||||| ||||| |||    
T  36658329 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttatttttgttagtatgttaattggcttttcggttgggtc 36658230  T
Q  105 taatgtgcaaaaattatcgatcgagcccggg 135  Q
     |||||||||||||||||||||||| |||||    
T  36658229 caatgtgcaaaaattatcgatcgagtccggg 36658199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 26502899 - 26502809
Alignment:
Q  63 ttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    |||| |||||||| |||||||||||||||||||||||| |  |||| ||||||||   ||||||||||||||||||||||| ||||||||||    
T  26502899 ttttttttttgta-gtgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgcca 26502809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 26589815 - 26589905
Alignment:
Q  63 ttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    |||| |||||||| |||||||||||||||||||||||| |  |||| ||||||||   ||||||||||||||||||||||| ||||||||||    
T  26589815 ttttttttttgta-gtgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgcca 26589905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 10868542 - 10868583
Alignment:
Q  53 ttgcccaaatttttctttttgtaagtgtgttaatgggctttt 94  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  10868542 ttgcccaaatttttctttttgtaaatgtgttaatgggctttt 10868583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 10876829 - 10876860
Alignment:
Q  108 tgtgcaaaaattatcgatcgagcccgggcgac 139  Q
    ||||||||||||||||||||||||||||||||    
T  10876829 tgtgcaaaaattatcgatcgagcccgggcgac 10876860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 5 - 172
Target Start/End: Original strand, 44084622 - 44084789
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||  |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||  ||||||| ||| ||     
T  44084622 tgtgctaaataaaattctgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgaacttttggattgggtt 44084721  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccct 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  44084722 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccgggcggtgaaaccgcccct 44084789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 45418731 - 45418563
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||  |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||  ||    
T  45418731 tgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttggatc 45418632  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  45418631 taatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 45418563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 41251653 - 41251798
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||| | | ||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41251653 tgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtc 41251752  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtc 150  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  41251753 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtc 41251798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 42440134 - 42439985
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||| |||||||||||||| | ||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  42440134 tgtgctaaataaaattgcaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggtttagtc 42440035  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42440034 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcca 42439985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 771151 - 770975
Alignment:
Q  1 ataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttg 100  Q
    ||||||||||||||||| |||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  771151 ataatgtgctaaataaagttccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgggctttttggttg 771052  T
Q  101 agtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccgg-----ggtcgccaggcgatgaaaccgcccct 172  Q
     ||||||||||||||| |||||||||||||||||||||| ||||||     ||||||| |||| |||||||||||||    
T  771051 ggtctaatgtgcaaaagttatcgatcgagcccgggcgaccgcccgggatccggtcgccgggcggtgaaaccgcccct 770975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 18981764 - 18981622
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||    
T  18981764 tgtgctaaataaaattccaagacctatttgcgtgtgacaatttttaaattgcccaaatttttctttttgtaaatgttttaatggacttttgggttgagtc 18981665  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggg 147  Q
    |||||||||||||||||| ||||||||||| |||| |||||||    
T  18981664 taatgtgcaaaaattatcaatcgagcccggacgaccgcccggg 18981622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 8147500 - 8147331
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaa-attgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagt 103  Q
    |||| ||||||||||||| ||| |||||||| | ||||||||||| | ||||||||||||||||||||||||||||||||||| | |||||| |||| ||    
T  8147500 tgtgttaaataaaattccgagatctatttgcgtgtgagaatttttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgagttgggt 8147401  T
Q  104 ctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  8147400 ctaatgtgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 8147331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 17445060 - 17445207
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||| | | ||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17445060 tgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtc 17445159  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    ||  |||||||||||||||||||||| |||||||| ||||| ||||||||    
T  17445160 ta--gtgcaaaaattatcgatcgagctcgggcgaccgcccgaggtcgcca 17445207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 5 - 170
Target Start/End: Original strand, 8059352 - 8059517
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| ||||| |||||  | |||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||| ||    
T  8059352 tgtgctaaataaaattccgagaccgatttgtgtgtgagaattttcaaattggccaaatttttctttttgtaagtgtgttaattggcttttgggttgactc 8059451  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 170  Q
    ||||||||||||||||||||| ||||| ||||||  | ||||||||| | |||| |||||||||||    
T  8059452 taatgtgcaaaaattatcgattgagcctgggcgatcggccggggtcgtcgggcggtgaaaccgccc 8059517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 31581641 - 31581790
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||| | ||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  31581641 tgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggatgagtc 31581740  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    |||| |||||||| ||||| ||||||| ||||||| ||||| ||||||||    
T  31581741 taatatgcaaaaagtatcgctcgagcctgggcgaccgcccgtggtcgcca 31581790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 32127160 - 32127309
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||||||| |||||||| | ||| |||||| | |||||| |||||||||||||||||| |||||||||| |||||||||| ||||     
T  32127160 tgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgcctaaatttttctttttgtaaatgtgttaatgagcttttgggtcgagtt 32127259  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  32127260 taatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcca 32127309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 35962863 - 35962714
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||  | ||| |||||| | |||||||||| |||||||||||||| |||||||||  ||||||||||||||||    
T  35962863 tgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgttaataagcttttgggttgagtc 35962764  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    |||||||||||||||||||||||||||||| |||| ||| ||||||||||    
T  35962763 taatgtgcaaaaattatcgatcgagcccggacgaccgcctggggtcgcca 35962714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 6403823 - 6403970
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||| ||||||||||||||||||||||| | | ||| |||||| | ||||||||||||||||||||| ||| ||||||||||  ||||| |||||||||    
T  6403823 tgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgaactttttggttgagtc 6403922  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6403923 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 6403970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 16 - 154
Target Start/End: Original strand, 2958131 - 2958268
Alignment:
Q  16 aaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaa 115  Q
    |||||||||||||||||||| | ||| |||||| | ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||    
T  2958131 aaattccaagacctatttgcgtgtgacaattttcagattacccaaatttttctctttgtaaatgtgttaatgggcttttgggttgagtctaatgtgc-aa 2958229  T
Q  116 aattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  2958230 aattatcgatcgagcccggacgaccgcccggggtcgcca 2958268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 16405748 - 16405603
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||| ||||||| | ||| |||||| | |||| |||||||||||||||| ||| |||||||||| ||||||||||||||||    
T  16405748 tgtgctaaataaaattccaagacttatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatgagcttttgggttgagtc 16405649  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtc 150  Q
    ||| ||||||||||||||||| ||||||||||||| |||| |||||    
T  16405648 taacgtgcaaaaattatcgattgagcccgggcgaccgcccagggtc 16405603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 5 - 135
Target Start/End: Original strand, 12756856 - 12756986
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||| ||||||| | |||||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||    
T  12756856 tgtgctaaataaaattccgagacttatttgcgtgtgagaattttcagattgctcaaatttttctttttgtaagtgtgttaattggcttttgggttgggtc 12756955  T
Q  105 taatgtgcaaaaattatcgatcgagcccggg 135  Q
    ||||| |||||||||||||||||| ||||||    
T  12756956 taatgcgcaaaaattatcgatcgaacccggg 12756986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 26162717 - 26162847
Alignment:
Q  1 ataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttg 100  Q
    ||||||||||||||||   ||| |||||||||||  | |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26162717 ataatgtgctaaataa---tccgagacctatttgtgtttgagaatttttagattgcccaaatttttctttttgtaagtgtgttaatgggtttttgggttg 26162813  T
Q  101 agtctaatgtgcaaaaattatcgatcgagcccgg 134  Q
    | | ||||||| ||||||||||||  ||||||||    
T  26162814 aatttaatgtgtaaaaattatcgaaggagcccgg 26162847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 26238056 - 26237957
Alignment:
Q  53 ttgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||  |||||| |||||||| ||||||||||||||||||||| ||||||||||||    
T  26238056 ttgcccaaatttttctttttgtaagtgtgttaatggacttttggtttgcatctaatttgcaaaaa-tatcgatcgagcccgggcgaccgcccggggtcgc 26237958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 2286010 - 2285887
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||||| |||||||||| | ||| |||||| | ||||| |||||||||| ||| |||| ||||||||| | ||||| |||||  |     
T  2286010 tgtgctaaataaaattccaaaacctatttgcgtgtgacaattttcagattgctcaaatttttcctttcgtaaatgtgttaatagactttttggttggatt 2285911  T
Q  105 taatgtgcaaaaattatcgatcga 128  Q
    ||||||||||||||||||||||||    
T  2285910 taatgtgcaaaaattatcgatcga 2285887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 4555278 - 4555354
Alignment:
Q  53 ttgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgag 129  Q
    ||||||||| ||||||||||||||||||||||| | |||||||||||| || | |||||||||||||||||||||||    
T  4555278 ttgcccaaaattttctttttgtaagtgtgttaacgagcttttgggttgggtttgatgtgcaaaaattatcgatcgag 4555354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 7072627 - 7072710
Alignment:
Q  63 ttttctttttgtaagtgt--gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgccc 144  Q
    |||||||||| |||||||  ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||| ||||    
T  7072627 ttttctttttataagtgtgtgttaatgggcttttgggttgagtttaatgtaaaaaaattatcgatcgagcccgggcgaccgccc 7072710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 34906028 - 34905969
Alignment:
Q  74 taagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccg 133  Q
    ||||||||||||||||||||||||||  |  |||||||||||||||||||||||||||||    
T  34906028 taagtgtgttaatgggcttttgggttaggcttaatgtgcaaaaattatcgatcgagcccg 34905969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 34523330 - 34523218
Alignment:
Q  62 tttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatg 161  Q
    ||||| |||||| |||||||| ||||||| | |  |||| | ||||||||   ||||||  ||||||||||||||||| ||||||||||||| |||| |     
T  34523330 tttttttttttg-aagtgtgtaaatgggcctatatgttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggta 34523232  T
Q  162 aaaccgcccctggt 175  Q
    ||||||||||||||    
T  34523231 aaaccgcccctggt 34523218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 5e-60; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 11018231 - 11018404
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||  |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11018231 tgtgctaaataaaattctgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtc 11018330  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggtcat 178  Q
    ||||||||||||||||||||||||||| ||||||| |||||| |||||| | || ||||||||||| |||||||    
T  11018331 taatgtgcaaaaattatcgatcgagcctgggcgaccgcccggagtcgccggacggtgaaaccgcccatggtcat 11018404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 45183129 - 45182964
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||  | |||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  45183129 tgtgctaaataaaattccgagacctatttgtgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtc 45183030  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 170  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||    
T  45183029 taatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 45182964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 27935324 - 27935165
Alignment:
Q  7 tgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtcta 106  Q
    |||||||||||||||| |||||||||| | |||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||| || ||    
T  27935324 tgctaaataaaattccgagacctattttcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgagcttttgggttgggttta 27935225  T
Q  107 atgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaacc 166  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||    
T  27935224 atgtgcaaaaattatcgatcgagcccgggcgactgcccagggttgccaggcggtgaaacc 27935165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 5 - 174
Target Start/End: Original strand, 6930913 - 6931082
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| | |||||||||| | |||||| |||||||||||||||||| ||||||||| |||||||||||||  ||    
T  6930913 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcctaaatttttctttttgtaaatgtgttaattggcttttgggttggatc 6931012  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctgg 174  Q
    ||||| ||||||||||||||||||||||||||||| | ||||||||||| |||| |||||||||||||||    
T  6931013 taatgcgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctgg 6931082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 22968463 - 22968610
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||| |||||||||||| | | ||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  22968463 tgtgctaaataaaatttcaagacctatttacgtgtgacaatttttagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttaagtc 22968562  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||    
T  22968563 taatgtgcaaaaattatcgatcgagcccggacgaccgcccggggtcgc 22968610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 6269445 - 6269592
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||| | | ||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6269445 tgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtc 6269544  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    ||||||||||||||||||||||||| |||| |||| ||||||| ||||    
T  6269545 taatgtgcaaaaattatcgatcgagtccggacgaccgcccgggatcgc 6269592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 5 - 172
Target Start/End: Complemental strand, 33041101 - 33040934
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| | ||| |||||| ||||||  |||||||||||||||||||||||||||||  |||||||||||| |||    
T  33041101 tgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcaaattgttcaaatttttctttttgtaagtgtgttaattagcttttgggttgggtc 33041002  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccct 172  Q
    |||| ||||||||||||| |||||||||| ||||| ||||||||||||| |||| |||||||||||||    
T  33041001 taatatgcaaaaattatcaatcgagcccgagcgaccgcccggggtcgccgggcggtgaaaccgcccct 33040934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 5 - 170
Target Start/End: Original strand, 6503588 - 6503753
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||| ||| |||||||||||| | |||||||||| | |||||  ||||||||||||||||||||||| |||| |||||||||||||||||    
T  6503588 tgtgctaaataaaaatccgagacctatttgcctgtgagaattttcagattgcttaaatttttctttttgtaagtgtgctaattggcttttgggttgagtc 6503687  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 170  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||||||| | || |||||||||||    
T  6503688 taatttgcaaaaataatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 6503753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 34084141 - 34084290
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||| | ||| |||||| | ||||||||||||||||||||||||| ||||||||||| ||||| |||||| |     
T  34084141 tgtgctaaataaaattccaagacctatttgcgtgtgataattttcatattgcccaaatttttctttttgtaaatgtgttaatggactttttggttgaatt 34084240  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  34084241 taatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgcca 34084290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 19565520 - 19565690
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| | | |||||||| | |||| |||||||||||||||||||| |||||||||||  |||| ||||| |||    
T  19565520 tgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgtaaatgtgttaatggattttttggttgggtc 19565619  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggt 175  Q
    ||||||||||||||||||||| || |||||||||| ||||||| ||||| |||| ||||||||||||||||    
T  19565620 taatgtgcaaaaattatcgattgaacccgggcgaccgcccgggatcgccgggcggtgaaaccgcccctggt 19565690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 19390294 - 19390145
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||| | | ||| |||||| | ||||||||||||||||||||||||| ||||||||| | ||||| |||||||||    
T  19390294 tgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatagacttttaggttgagtc 19390195  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    |||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  19390194 taatgtgcaaaaattatcgatcgaacccggacgaccgcccggggtcgcca 19390145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 39771932 - 39771791
Alignment:
Q  11 aaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgt 110  Q
    |||||||||| |||||||||||| | | ||| |||||| | ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  39771932 aaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgt 39771833  T
Q  111 gcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  39771832 gcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 39771791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 5 - 172
Target Start/End: Complemental strand, 45336022 - 45335856
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||| | | |||||||| | |||||||| |||||||||||||||| ||||||||| | ||||| ||||| |||    
T  45336022 tgtgctaaataaaattccaagacctatttgcgtgtaagaattttcagattgcccagatttttctttttgtaaatgtgttaat-gactttttggttgggtc 45335924  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccct 172  Q
    ||||||| ||||||||||||| ||| ||||||||| ||||| ||||||| |||| |||||||||||||    
T  45335923 taatgtgtaaaaattatcgattgagtccgggcgaccgcccgaggtcgccgggcggtgaaaccgcccct 45335856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 40081760 - 40081892
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||| ||||| |||||| |||||||| | ||| |||||| ||||||||||||||||||||||||||| |||||||||| |||||| |||||||||    
T  40081760 tgtgctaaaaaaaat-ccaagatctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatgagctttt-ggttgagtc 40081857  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgac 139  Q
    |||||| ||||||||||||||||||||||||||||    
T  40081858 taatgttcaaaaattatcgatcgagcccgggcgac 40081892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 35514410 - 35514249
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||| |||||||||||| ||||||||||||   |||||||||| | |||| ||||||||||||||||||    |||||||||| |||||||||||  ||    
T  35514410 tgtgcaaaataaaattcctagacctatttgcgagtgagaattttcatattgtccaaatttttctttttgt----gtgttaatggacttttgggttggatc 35514315  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 170  Q
    || | ||| ||||||||||||||||||||| |||| | ||||||||||| |||| |||||| ||||    
T  35514314 tagtatgcgaaaattatcgatcgagcccggacgaccgtccggggtcgccgggcggtgaaactgccc 35514249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 5135365 - 5135291
Alignment:
Q  57 ccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcc 131  Q
    ||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| ||||||| ||||||||||||    
T  5135365 ccaaatttttctttttgtaagtgtgttaatgagcttttaggttgggtctaatgtacaaaaataatcgatcgagcc 5135291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 53 - 176
Target Start/End: Complemental strand, 5354809 - 5354686
Alignment:
Q  53 ttgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    |||||||| ||||| |||||  |||||||| ||||||| | | |||||   ||||||||  |||||||  ||||||||||||||||| ||||||||||||    
T  5354809 ttgcccaatttttttttttttgaagtgtgtaaatgggcctataggttggacctaatgtgagaaaattaaggatcgagcccgggcgaccgcccggggtcgc 5354710  T
Q  153 caggcgatgaaaccgcccctggtc 176  Q
    | |||| |||||| ||||| ||||    
T  5354709 cgggcggtgaaactgcccccggtc 5354686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 6891035 - 6890976
Alignment:
Q  116 aattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggt 175  Q
    |||||||||||||||||||||||| |||||| |||||| |||| ||||||||||||||||    
T  6891035 aattatcgatcgagcccgggcgaccgcccggtgtcgccgggcggtgaaaccgcccctggt 6890976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 22922214 - 22922156
Alignment:
Q  96 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    |||||||| |||||||||||||| |||||||||||||| ||||| ||||||| ||||||    
T  22922214 ggttgagtttaatgtgcaaaaatgatcgatcgagcccgagcgaccgcccgggatcgcca 22922156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 325
Target Start/End: Original strand, 47508169 - 47508253
Alignment:
Q  241 ttaggtatatgagtcatctcacttataaaatatttaatattaattttttcttccaatgtaagaaatattcctcacactcgatata 325  Q
    |||||| |||||||||||||||||||||| | || || ||| | |||| | ||| || ||||| ||||| |||||||| ||||||    
T  47508169 ttaggtttatgagtcatctcacttataaagtgttgaacatttacttttccatccgatataagacatattactcacacttgatata 47508253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 5e-57; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 28996878 - 28996710
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||| | ||||| ||||| |||    
T  28996878 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttaggttgggtc 28996779  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    ||||| |||||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||||||||    
T  28996778 taatgcgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 28996710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 18339254 - 18339106
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||||| |||||||||| | |||||||||| |||||||||||||||||||||||| ||||||| | ||| |||    
T  18339254 tgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaattggcttttagattgggtc 18339155  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcc 153  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  18339154 taatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 18339106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 398765 - 398618
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||| ||||||||||||||||||||||| | | ||| |||||| ||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||    
T  398765 tgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttgagtc 398666  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  398665 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 398618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 34948777 - 34948926
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||| ||||| |||||||  | ||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34948777 tgtgctaaataaaatttcaagatctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtc 34948876  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  34948877 taatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgcca 34948926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 13837969 - 13837820
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||||||||||||||| | ||| |||||| | ||||||||||||||||||||||||| |||||| ||| ||||||||||||||||    
T  13837969 tgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttgatgtgcttttgggttgagtc 13837870  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    |||||| ||||||||||||||||| |||| ||||  ||||||||||||||    
T  13837869 taatgtacaaaaattatcgatcgaacccgagcgatcgcccggggtcgcca 13837820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 29743431 - 29743262
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||| | | |||||||| | ||||||||||||||||||| ||||| ||||||||||  ||||| ||||| |||    
T  29743431 tgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttctttctgtaaatgtgttaatgaactttttggttgggtc 29743332  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctgg 174  Q
    ||||||||||||||||||||| |||||||||| || ||||||| ||| | | || |||||||||||||||    
T  29743331 taatgtgcaaaaattatcgattgagcccgggcaaccgcccgggatcgtcggacggtgaaaccgcccctgg 29743262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 33229355 - 33229487
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||| || |||| ||||| | | | |||||||| | |||||||||||||||||||||| || ||||||||||| ||||||||||| |||    
T  33229355 tgtgctaaataaaatcccgagacttatttacgtgtaagaattttcagattgcccaaatttttctttttggaaatgtgttaatggacttttgggttgggtc 33229454  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcg 137  Q
    |||||| ||||||| ||||||||||||||||||    
T  33229455 taatgtacaaaaatgatcgatcgagcccgggcg 33229487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 24697899 - 24698005
Alignment:
Q  68 tttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccg 167  Q
    ||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||| |||||||||||| || ||||||||||| |||| ||||||||    
T  24697899 tttttgtaagtgtgttaatgggcttttgggttgggcctaatgtgaaaaaattatcgattgagcccgggcgagtgtccggggtcgccgggcggtgaaaccg 24697998  T
Q  168 cccctgg 174  Q
    || ||||    
T  24697999 ccactgg 24698005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 57 - 167
Target Start/End: Original strand, 31028435 - 31028545
Alignment:
Q  57 ccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccagg 156  Q
    ||||| ||| |||||||||| |||||||||| |||||| |||||  ||||||||||||||||||||||||||| |||||| || || |||||||||| ||    
T  31028435 ccaaaatttcctttttgtaaatgtgttaatgagcttttaggttggatctaatgtgcaaaaattatcgatcgagtccgggcaaccgctcggggtcgccggg 31028534  T
Q  157 cgatgaaaccg 167  Q
    || ||||||||    
T  31028535 cggtgaaaccg 31028545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 138
Target Start/End: Complemental strand, 24695572 - 24695502
Alignment:
Q  68 tttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcga 138  Q
    ||||||||||||||||||||||||||||||||||| |||||||  |||||| ||||||  |||| ||||||    
T  24695572 tttttgtaagtgtgttaatgggcttttgggttgagcctaatgttaaaaaatgatcgatttagcctgggcga 24695502  T

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Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 13647053 - 13646997
Alignment:
Q  117 attatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    ||||||||||||||||||||||| ||||||||||||| || | ||||||||||||||    
T  13647053 attatcgatcgagcccgggcgaccgcccggggtcgccgggtggtgaaaccgcccctg 13646997  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 34385519 - 34385575
Alignment:
Q  117 attatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    ||||||||||||||| |||| || ||||||||||||| |||| ||||||||||||||    
T  34385519 attatcgatcgagccagggcaaccgcccggggtcgccgggcggtgaaaccgcccctg 34385575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 3050157 - 3050094
Alignment:
Q  75 aagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcga 138  Q
    |||||||||||||||||||| ||||| |   |||||||||||||||| ||| ||||||||||||    
T  3050157 aagtgtgttaatgggcttttcggttgcgctcaatgtgcaaaaattattgattgagcccgggcga 3050094  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 24072625 - 24072576
Alignment:
Q  76 agtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgat 125  Q
    |||||||||||||| |||||||||   |||||||||||||||||||||||    
T  24072625 agtgtgttaatgggtttttgggttcgatctaatgtgcaaaaattatcgat 24072576  T

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Target: scaffold0154 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 31628 - 31460
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||| |||||||||| | ||||||||||||   |||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  31628 tgtgcaaaataaaattactagacctatttgcgagtgagaattttcagattgtccaaatttttctttttgtaagtgtgttaatgggcttttgggttgggtc 31529  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    || |||||||||||||||||||||||||||||||| | | ||||||||| |||||||||||||||||||    
T  31528 tagtgtgcaaaaattatcgatcgagcccgggcgaccgtctggggtcgccgggcgatgaaaccgcccctg 31460  T

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Target: scaffold0069 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 17990 - 17841
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||| |||||||||||| ||| ||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17990 tgtgctaaataaaatttcaagacctatttacatgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtc 17891  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    |||||||||||||||||||||||||||||| |||  || |||||||||||    
T  17890 taatgtgcaaaaattatcgatcgagcccggacgatcgctcggggtcgcca 17841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 35907704 - 35907535
Alignment:
Q  1 ataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttg 100  Q
    |||||||||||||||||||||| |||||||||||| | |||||||||| | ||| |||||| ||||||||||||||||||  |||| |||||||||||||    
T  35907704 ataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaaattttctttttgtaagtgtactaattggcttttgggttg 35907605  T
Q  101 agtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 170  Q
     ||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||| |||||||||||    
T  35907604 ggtctaatgtgcaaaaattatcgatcaagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgccc 35907535  T

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Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 17445465 - 17445293
Alignment:
Q  1 ataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttg 100  Q
    |||||||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||| | |||||||||||    
T  17445465 ataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttg 17445366  T
Q  101 agtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
      |||||||| |||||||||| |||| |||||||||||| ||  ||||||||| ||| |||||||||||||||    
T  17445365 gatctaatgtacaaaaattattgatccagcccgggcgaccgcatggggtcgccgggcaatgaaaccgcccctg 17445293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 26144403 - 26144256
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||| ||||||||||||||||||||||| | | ||| |||||| ||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||    
T  26144403 tgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttgagtc 26144304  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26144303 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 26144256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 5 - 154
Target Start/End: Complemental strand, 7433593 - 7433444
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||| |||||||||||||  | ||| |||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  7433593 tgtgctaaataaaatttcaagacctatttgtgtgtgacaatttttagattgcccaaaattttctttttgtaaatgtgttaatgggcttttgggttgagtc 7433494  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  7433493 taatgtgcaaaaattatagatcgagctcgggcgaccgcccggggttgcca 7433444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 321392 - 321561
Alignment:
Q  1 ataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttg 100  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  321392 ataatgtgttaaataaaattccgagacctatttgcatatgagaattttcagattgcccaaatttttctttttgtaactgtgttaatggacttttgggttg 321491  T
Q  101 agtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 170  Q
      |||||||  ||||||||||||||||||||||| |||| |||||   ||||| || | |||||||||||    
T  321492 gatctaatgcacaaaaattatcgatcgagcccggacgaccgcccgaaatcgccgggtggtgaaaccgccc 321561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 3829131 - 3828967
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||||||||||||||||| ||||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||||||  ||||||||||| ||     
T  3829131 tgtgctaaataaaattcca-gacctatttgcgtatgaaaattttcagattgcccaaatttttctttttgtaagtgtgttaatgaacttttgggttgggtt 3829033  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 170  Q
    |||||||||||||||||||||||| |||| ||||| | ||||||| ||| || |||||||||||||    
T  3829032 taatgtgcaaaaattatcgatcgaacccgagcgaccgtccggggttgccgggtgatgaaaccgccc 3828967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 42310964 - 42311093
Alignment:
Q  9 ctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaat 108  Q
    |||||||||||| |||||| ||||||| | ||| |||||| | ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  42310964 ctaaataaaatttcaagacttatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaacgggcttttgggttgagtctaat 42311063  T
Q  109 gtgcaaaaattatcgatcgagcccgggcga 138  Q
    ||||||||||||||||||||||||||||||    
T  42311064 gtgcaaaaattatcgatcgagcccgggcga 42311093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 6 - 154
Target Start/End: Original strand, 32982076 - 32982224
Alignment:
Q  6 gtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtct 105  Q
    |||||||||||||||||||||||||||||  | ||| |||||| | |||| |||||||||||||||||||| | ||||||||||||||| ||||| ||||    
T  32982076 gtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgtccaaatttttctttttgtaaatatgttaatgggcttttaggttgggtct 32982175  T
Q  106 aatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 154  Q
    |||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  32982176 aatgtgcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgcca 32982224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 57 - 174
Target Start/End: Original strand, 41972346 - 41972462
Alignment:
Q  57 ccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccagg 156  Q
    |||||||||||||||||||||||||||||| ||||||| |||||  ||||||||||||||||||||||||||| || |||||| ||||||||||||  |     
T  41972346 ccaaatttttctttttgtaagtgtgttaataggcttttaggttggatctaatgtgcaaaaattatcgatcgag-ccaggcgaccgcccggggtcgctgga 41972444  T
Q  157 cgatgaaaccgcccctgg 174  Q
    || || ||||||||||||    
T  41972445 cggtggaaccgcccctgg 41972462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 27 - 175
Target Start/End: Complemental strand, 33489815 - 33489665
Alignment:
Q  27 cctatttgcatatgagaatttttaaatt--gcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcga 124  Q
    ||||||||| | |||||||||| | |||  || |||||||||||||| |||||||||||||||||||||| | ||||||||||||| |||||||||||||    
T  33489815 cctatttgcgtgtgagaattttcagattttgctcaaatttttcttttagtaagtgtgttaatgggcttttagtttgagtctaatgtacaaaaattatcga 33489716  T
Q  125 tcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggt 175  Q
     | | ||||  |||| | ||||||||||| || | ||||||||||||||||    
T  33489715 acaatcccgaacgaccgtccggggtcgccgggtggtgaaaccgcccctggt 33489665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 23313340 - 23313237
Alignment:
Q  52 attgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaa-aaattatcgatcgagcccgggcgactgcccggggtc 150  Q
    ||||||||||||||||||||||||| ||||||||||  |||||  |||||||||||||||||| |||| ||| ||||||||||||| || ||||| | ||    
T  23313340 attgcccaaatttttctttttgtaaatgtgttaatgaacttttatgttgagtctaatgtgcaacaaatcatcaatcgagcccgggcaaccgcccgagatc 23313241  T
Q  151 gcca 154  Q
    ||||    
T  23313240 gcca 23313237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 35951427 - 35951493
Alignment:
Q  68 tttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 134  Q
    ||||||| |||||||||||||||| |||||||    ||||||| |||||||||||||||||||||||    
T  35951427 tttttgttagtgtgttaatgggctattgggttcgacctaatgtacaaaaattatcgatcgagcccgg 35951493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 48901203 - 48901291
Alignment:
Q  84 aatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    ||||||||||||||||| | |||||||||| |||||||||||||| ||| ||| || |||||| || ||| |||| || |||||||||||    
T  48901203 aatgggcttttgggttgggcctaatgtgcataaattatcgatcga-ccccggccaccgcccggagttgccgggcggtggaaccgcccctg 48901291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 31867014 - 31866958
Alignment:
Q  116 aattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccct 172  Q
    |||||||| |||| |||||||||| ||||||||||||| |||| |||||||||||||    
T  31867014 aattatcggtcgaacccgggcgaccgcccggggtcgccgggcggtgaaaccgcccct 31866958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 44352614 - 44352670
Alignment:
Q  117 attatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 173  Q
    |||||||||||||||||||||||  |||||||||||| |  | ||||||||||||||    
T  44352614 attatcgatcgagcccgggcgacctcccggggtcgccggatggtgaaaccgcccctg 44352670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 5378 - 5230
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||||| |||||||||| | |||||||||| |||||||||||||||||||||||| ||||||| | ||| |||    
T  5378 tgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaattggcttttagattgggtc 5279  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcc 153  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  5278 taatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 5230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 480476 - 480623
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||| ||||||||||||||||||||||| | | ||| |||||| ||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||    
T  480476 tgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttgagtc 480575  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  480576 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 480623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 670 - 523
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    ||||| ||||||||||||||||||||||| | | ||| |||||| ||||||||||||||||||||||| ||| |||||||||| |||||| |||||||||    
T  670 tgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaatgagctttttggttgagtc 571  T
Q  105 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 152  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  570 taatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgc 523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 53073 - 52944
Alignment:
Q  5 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 104  Q
    |||||||||||||||||| |||||||||||||| |||||||||| | |||| |||||||||||||||||||| ||||||||| |||||||||||| | ||    
T  53073 tgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgttaattggcttttgggttaaatc 52974  T
Q  105 taatgtgcaaaaattatcgatcgagcccgg 134  Q
    ||||||||||||||||||||||||||||||    
T  52973 taatgtgcaaaaattatcgatcgagcccgg 52944  T

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Target: scaffold0769 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 62 - 171
Target Start/End: Complemental strand, 1367 - 1259
Alignment:
Q  62 tttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatg 161  Q
    ||||| |||||| |||||||| ||||||| | |  |||| | ||||||||   ||||||  ||||||||||||||||| ||||||||||||| |||| |     
T  1367 tttttttttttg-aagtgtgtaaatgggcctatatgttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggta 1269  T
Q  162 aaaccgcccc 171  Q
    ||||||||||    
T  1268 aaaccgcccc 1259  T

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Target: scaffold0012 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 158
Target Start/End: Complemental strand, 194118 - 194023
Alignment:
Q  62 tttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcg 158  Q
    ||||| |||||| |||||||| ||||||| | | ||||| | ||||||||   ||||||  ||||||||||||||||| ||||||||||||| ||||    
T  194118 tttttttttttg-aagtgtgtaaatgggcctataggttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcg 194023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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