View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3571_high_5 (Length: 392)

Name: NF3571_high_5
Description: NF3571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3571_high_5
NF3571_high_5
[»] chr7 (12 HSPs)
chr7 (11-379)||(22801471-22801836)
chr7 (191-379)||(22868346-22868534)
chr7 (15-104)||(1885541-1885630)
chr7 (28-104)||(5937423-5937499)
chr7 (63-104)||(48438636-48438677)
chr7 (11-163)||(48964006-48964158)
chr7 (135-178)||(9037665-9037708)
chr7 (69-104)||(25956467-25956502)
chr7 (57-99)||(2144546-2144588)
chr7 (73-150)||(24339668-24339745)
chr7 (15-104)||(27945009-27945098)
chr7 (57-93)||(2143866-2143902)
[»] chr5 (11 HSPs)
chr5 (13-163)||(30080444-30080594)
chr5 (12-104)||(19167578-19167671)
chr5 (17-102)||(24906305-24906390)
chr5 (36-104)||(10010543-10010611)
chr5 (34-100)||(26205766-26205832)
chr5 (73-149)||(21542056-21542132)
chr5 (48-122)||(21319929-21320003)
chr5 (25-99)||(38784784-38784858)
chr5 (73-150)||(7677731-7677808)
chr5 (39-79)||(309150-309190)
chr5 (57-93)||(42192286-42192322)
[»] chr4 (9 HSPs)
chr4 (34-177)||(37496691-37496834)
chr4 (48-104)||(44362667-44362723)
chr4 (25-163)||(11797571-11797712)
chr4 (57-104)||(13307887-13307934)
chr4 (48-104)||(13117430-13117486)
chr4 (129-177)||(13484079-13484127)
chr4 (58-121)||(22799878-22799941)
chr4 (61-122)||(847965-848026)
chr4 (61-150)||(30982834-30982923)
[»] chr2 (12 HSPs)
chr2 (15-104)||(43586007-43586096)
chr2 (33-100)||(13501084-13501151)
chr2 (40-104)||(14373429-14373493)
chr2 (57-159)||(24067263-24067365)
chr2 (12-104)||(33884016-33884108)
chr2 (40-104)||(44984652-44984716)
chr2 (33-96)||(11439781-11439844)
chr2 (57-104)||(14450797-14450844)
chr2 (60-104)||(8300221-8300265)
chr2 (48-100)||(10535765-10535817)
chr2 (48-104)||(18512144-18512200)
chr2 (44-104)||(18570969-18571029)
[»] chr8 (8 HSPs)
chr8 (20-104)||(42874495-42874579)
chr8 (22-100)||(26915246-26915324)
chr8 (46-163)||(27733846-27733963)
chr8 (27-179)||(10497743-10497895)
chr8 (57-100)||(31119097-31119140)
chr8 (34-104)||(24295139-24295209)
chr8 (9-97)||(22600490-22600579)
chr8 (48-100)||(34073984-34074036)
[»] chr1 (7 HSPs)
chr1 (34-137)||(18946003-18946106)
chr1 (39-104)||(40176595-40176660)
chr1 (39-100)||(24176811-24176873)
chr1 (42-96)||(24462280-24462334)
chr1 (11-101)||(18950911-18951002)
chr1 (73-150)||(47989523-47989600)
chr1 (48-104)||(14332410-14332465)
[»] chr6 (14 HSPs)
chr6 (35-104)||(19369805-19369874)
chr6 (52-104)||(6751884-6751936)
chr6 (48-98)||(10031571-10031621)
chr6 (15-104)||(1334629-1334718)
chr6 (67-177)||(785384-785494)
chr6 (42-100)||(5579649-5579707)
chr6 (73-150)||(16766723-16766800)
chr6 (11-123)||(21395291-21395402)
chr6 (69-104)||(26402682-26402717)
chr6 (40-82)||(32297976-32298018)
chr6 (73-150)||(8365475-8365552)
chr6 (61-102)||(10157998-10158039)
chr6 (27-104)||(22745938-22746014)
chr6 (40-93)||(34868170-34868223)
[»] chr3 (4 HSPs)
chr3 (41-104)||(49179717-49179780)
chr3 (52-104)||(14338485-14338537)
chr3 (129-176)||(34834869-34834916)
chr3 (39-93)||(34409355-34409409)
[»] scaffold0024 (1 HSPs)
scaffold0024 (34-104)||(18110-18180)
[»] scaffold0314 (2 HSPs)
scaffold0314 (47-104)||(8948-9005)
scaffold0314 (129-163)||(9017-9051)
[»] scaffold0504 (1 HSPs)
scaffold0504 (15-124)||(8679-8787)


Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 379
Target Start/End: Complemental strand, 22801836 - 22801471
Alignment:
Q  11 cacagacaccggaaacgacactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgtattgtc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22801836 cacagacaccggaaacgacactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgtattgtc 22801737  T
Q  111 agtgtctgacaccgcacttgtcggacactgggacacgccttcaatcagaagtgctggtgcaacagagcttacaagtggtgatcttaaggatcaagcatcc 210  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22801736 agtgtctgacaccacacttgtcggacactgggacacgccttcaatcagaagtgctggtgcaacagagcttacaagtggtgatcttaaggatcaagcatcc 22801637  T
Q  211 attatagggaattaggaaaaagtgaaggattgtgcttccatcgtgcaccgttgaagtgacaataccctcttcatgaaagtgtgatcaagctgtctttcca 310  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||| ||||||||| |  || |||||| ||    
T  22801636 attatagggaattaggaaaaagtgaaggattgtgcttcca-cctgcaccgttgaagtgacaatacccacttcatcaaagtgtgagc--gccgtctttaca 22801540  T
Q  311 aacaattttcttattccccaattaaggaaatgttcataccaaaagcaagagattaaaatgatattgatg 379  Q
    ||||||||| | ||||||||||||||| |||||||||||||||||||||| | | ||||||||||||||    
T  22801539 aacaattttgtcattccccaattaagggaatgttcataccaaaagcaagataatgaaatgatattgatg 22801471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 191 - 379
Target Start/End: Complemental strand, 22868534 - 22868346
Alignment:
Q  191 atcttaaggatcaagcatccattatagggaattaggaaaaagtgaaggattgtgcttccatcgtgcaccgttgaagtgacaataccctcttcatgaaagt 290  Q
    |||| ||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22868534 atctaaaggaccacgcatccattatagggaataaggaaaaagtgaaggattgtgcttccatcgtgcaccgttgaagtgacaataccctcttcatgaaagt 22868435  T
Q  291 gtgatcaagctgtctttccaaacaattttcttattccccaattaaggaaatgttcataccaaaagcaagagattaaaatgatattgatg 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22868434 gtgatcaagctgtctttccaaacaattttcttattccccaattaaggaaatgttcataccaaaagcaagagattaaaatgatattgatg 22868346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 1885541 - 1885630
Alignment:
Q  15 gacaccggaaacgacactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    ||||||||| |||||||| | |||||||| || |||| ||| ||||||||| | |||||||||||||| |||||||||||||||||||||    
T  1885541 gacaccggacacgacactgatacggacacatcgacacggataaaattttgaaaaaatgacataattcaatgtaatcacaagtgtcggtgt 1885630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 5937499 - 5937423
Alignment:
Q  28 acactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    ||||| |||| ||||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||| ||||    
T  5937499 acactgacacagacacgtcaacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtctgtgt 5937423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 48438636 - 48438677
Alignment:
Q  63 tgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    |||||||||||||||||||||||||||||||  |||||||||    
T  48438636 tgagataatgacataattcactgtaatcacacatgtcggtgt 48438677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 48964158 - 48964006
Alignment:
Q  11 cacagacaccggaaacgacactaacacggacacgtcaac-accgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgtattgt 109  Q
    |||| |||||||| | |||| | |||| ||||||||| | || ||| ||||| ||||| |||||||||||||| | ||||||||||||| |||||  |||    
T  48964158 cacatacaccggacatgacaatgacacagacacgtcagccacagataaaattgtgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgt 48964059  T
Q  110 cagtgtctgacaccgcacttgtcggacactgggacacgccttcaatcagaagtg 163  Q
     |||||  |||||   || ||||| |||| ||||||  ||||||||||||||||    
T  48964058 aagtgt-ggacacgatacgtgtcgaacaccgggacataccttcaatcagaagtg 48964006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 9037708 - 9037665
Alignment:
Q  135 acactgggacacgccttcaatcagaagtgctggtgcaacagagc 178  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||    
T  9037708 acactgggacaagccttcaatcagaagtgttggtgcaagagagc 9037665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 104
Target Start/End: Original strand, 25956467 - 25956502
Alignment:
Q  69 aatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    |||||||||||||| |||||||||||||||||||||    
T  25956467 aatgacataattcaatgtaatcacaagtgtcggtgt 25956502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 2144588 - 2144546
Alignment:
Q  57 aaattttgagataatgacataattcactgtaatcacaagtgtc 99  Q
    ||||||||||| |||||||||||||| |||||||||| |||||    
T  2144588 aaattttgagaaaatgacataattcaatgtaatcacacgtgtc 2144546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 24339668 - 24339745
Alignment:
Q  73 acataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgacaccgcacttgtcggacactgggacacgcct 150  Q
    |||||||||| |||||| ||||||||||||||  |||| ||||| |||||  ||| | || ||||| |||||||||||    
T  24339668 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtatccgacaccgggacacgcct 24339745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 27945009 - 27945098
Alignment:
Q  15 gacaccggaaacgacactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    ||||||||| |||||||  |||| |||||| | |||||  | | | ||||||| ||| |||||||||| |||||| ||||||||||||||    
T  27945009 gacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaattacataattcagtgtaattacaagtgtcggtgt 27945098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 2143902 - 2143866
Alignment:
Q  57 aaattttgagataatgacataattcactgtaatcaca 93  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  2143902 aaattttgagaaaatgacataattcaatgtaatcaca 2143866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 30080594 - 30080444
Alignment:
Q  13 cagacaccggaaacgacactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgtattgtcag 112  Q
    |||||||| || |||||| | ||||||| | ||| |||| ||| ||||||||||| |||||||||||||| ||||||||||||| |||||||  ||| ||    
T  30080594 cagacaccagacacgacaatgacacggaaatgtcgacactgataaaattttgagaaaatgacataattcaatgtaatcacaagtatcggtgtggtgttag 30080495  T
Q  113 tgtctgacaccgcacttgtcggacactgggacacgccttcaatcagaagtg 163  Q
    |||| ||||   ||| |||||||||| ||||||| |||||||| |||||||    
T  30080494 tgtcggacatgacacatgtcggacaccgggacactccttcaattagaagtg 30080444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 19167671 - 19167578
Alignment:
Q  12 acagacaccggaaacgacactaacacggacacgtcaacaccgatcaaattttgagataa-tgacataattcactgtaatcacaagtgtcggtgt 104  Q
    ||||||||| || |||||||| |||| |||||||  |||||||| ||||||||| | || ||||| |||||| |||||||||||||||||||||    
T  19167671 acagacaccagacacgacactgacacagacacgttgacaccgataaaattttgaaaaaaatgacacaattcaatgtaatcacaagtgtcggtgt 19167578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 24906390 - 24906305
Alignment:
Q  17 caccggaaacgacactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggt 102  Q
    ||||||| ||||||| ||||| |||||| |||||| ||| | | ||||| | |||||||||||||| |||||| ||||||||||||    
T  24906390 caccggacacgacacgaacactgacacgccaacacagataataatttgaaaaaatgacataattcagtgtaattacaagtgtcggt 24906305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 10010543 - 10010611
Alignment:
Q  36 acggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    |||||||| |||||||  || ||||||||| | |||||||||||||| |||||||||| ||||||||||    
T  10010543 acggacacctcaacactaataaaattttgaaaaaatgacataattcattgtaatcacatgtgtcggtgt 10010611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 100
Target Start/End: Complemental strand, 26205832 - 26205766
Alignment:
Q  34 acacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcg 100  Q
    |||| |||||||| | |||||| ||||||||||| |||||||||||||| |||||||| | ||||||    
T  26205832 acactgacacgtcgataccgataaaattttgagaaaatgacataattcagtgtaatcataggtgtcg 26205766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 21542056 - 21542132
Alignment:
Q  73 acataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgacaccgcacttgtcggacactgggacacgcc 149  Q
    |||||||||| |||||| ||||||||||||||  |||| ||||| |||||  ||| |||| ||||| ||||||||||    
T  21542056 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcc 21542132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 21320003 - 21319929
Alignment:
Q  48 acaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgacac 122  Q
    |||| ||| ||||||||| | ||||| |||||||| ||||||||||||||||| |||  |||| ||||| |||||    
T  21320003 acacggataaaattttgaaaaaatgatataattcaatgtaatcacaagtgtcgatgtcatgtcggtgtcggacac 21319929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 38784784 - 38784858
Alignment:
Q  25 acgacactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtc 99  Q
    |||||||||||||  |||| ||  ||||||| ||||| ||| | ||||| |||||||| ||||||||||||||||    
T  38784784 acgacactaacactaacacatcggcaccgataaaattgtgaaaaaatgatataattcaatgtaatcacaagtgtc 38784858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 7677731 - 7677808
Alignment:
Q  73 acataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgacaccgcacttgtcggacactgggacacgcct 150  Q
    |||||||||| || ||| | ||||||||||||  |||| |||||||||||  ||| |||| ||||| |||||||||||    
T  7677731 acataattcagtgcaattagaagtgtcggtgtcgtgtcggtgtctgacacgtcacatgtccgacaccgggacacgcct 7677808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 309150 - 309190
Alignment:
Q  39 gacacgtcaacaccgatcaaattttgagataatgacataat 79  Q
    |||||||| |||||||| ||||||||||| |||||||||||    
T  309150 gacacgtcgacaccgataaaattttgagaaaatgacataat 309190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 42192286 - 42192322
Alignment:
Q  57 aaattttgagataatgacataattcactgtaatcaca 93  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  42192286 aaattttgagacaatgacataattcaatgtaatcaca 42192322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 34 - 177
Target Start/End: Original strand, 37496691 - 37496834
Alignment:
Q  34 acacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgacaccgcacttgtcg 133  Q
    |||| |||||||  |||||||| |  |||||||| |||||||||||||| |||||||||||||||||||||  ||||  || | |||||  ||| |||||    
T  37496691 acactgacacgttgacaccgataattttttgagaaaatgacataattcaatgtaatcacaagtgtcggtgttgtgtcgttgccggacacgacacatgtcg 37496790  T
Q  134 gacactgggacacgccttcaatcagaagtgctggtgcaacagag 177  Q
    ||||| |||||||||||||||||| |||||   |||||||||||    
T  37496791 gacaccgggacacgccttcaatcataagtgtccgtgcaacagag 37496834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 44362667 - 44362723
Alignment:
Q  48 acaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    |||||||| ||||||||||| |||||||||||| | ||||||||||||||| |||||    
T  44362667 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgt 44362723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 163
Target Start/End: Complemental strand, 11797712 - 11797571
Alignment:
Q  25 acgacactaacacggacacgtcaacaccgatcaaattttgagataa---tgacataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgaca 121  Q
    |||||| | |||||| ||| |||||||| || ||||||||| | ||   |||||||||| | |||||||||||||||||||||  ||||  |||| ||||    
T  11797712 acgacattgacacgggcacatcaacaccaataaaattttgaaaaaaaaatgacataatttaatgtaatcacaagtgtcggtgttgtgtcgttgtcagaca 11797613  T
Q  122 ccgcacttgtcggacactgggacacgccttcaatcagaagtg 163  Q
       ||| ||| ||| |||||||||||| ||| ||||||||||    
T  11797612 taacacgtgttggatactgggacacgctttcgatcagaagtg 11797571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 13307887 - 13307934
Alignment:
Q  57 aaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    ||||||||||| |||||||||||||| ||||||||||||||| |||||    
T  13307887 aaattttgagaaaatgacataattcaatgtaatcacaagtgttggtgt 13307934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 13117430 - 13117486
Alignment:
Q  48 acaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    ||||| || |||||| |||| ||||||| |||||| |||||||||||||||||||||    
T  13117430 acaccaataaaatttggagaaaatgacaaaattcaatgtaatcacaagtgtcggtgt 13117486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 13484079 - 13484127
Alignment:
Q  129 tgtcggacactgggacacgccttcaatcagaagtgctggtgcaacagag 177  Q
    ||||||||||||| ||| || |||||||||||||| |||||||||||||    
T  13484079 tgtcggacactggaacatgcattcaatcagaagtgttggtgcaacagag 13484127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 22799941 - 22799878
Alignment:
Q  58 aattttgagataatgacataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgaca 121  Q
    |||||| ||| |||||||||||||| |||||||||| ||||| ||||  |||||||||| ||||    
T  22799941 aatttttagaaaatgacataattcaatgtaatcacacgtgtcagtgtcgtgtcagtgtcggaca 22799878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 847965 - 848026
Alignment:
Q  61 tttgagataatgacataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgacac 122  Q
    ||||||| ||| |||||||||||| |||| |||||||||||||| ||||  ||||| |||||    
T  847965 tttgagaaaattacataattcactataattacaagtgtcggtgtcttgttggtgtcggacac 848026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 150
Target Start/End: Complemental strand, 30982923 - 30982834
Alignment:
Q  61 tttgagataatgacataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgacaccgcacttgtcggacactgggacacgcct 150  Q
    ||||||| ||| ||||| |||| |||||| | ||||||||||||  |||| ||||| |||||  ||| |||| ||||| |||||||||||    
T  30982923 tttgagaaaatcacatatttcagtgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcct 30982834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 43586096 - 43586007
Alignment:
Q  15 gacaccggaaacgacactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    ||||||||| |||  ||| |||| ||||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  43586096 gacaccggacacggtactgacactgacacgtcaacacagataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgt 43586007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 13501151 - 13501084
Alignment:
Q  33 aacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcg 100  Q
    ||||||||||| || || ||||| ||||||| ||| |||||||||||||| |||||||||||||||||    
T  13501151 aacacggacacatcgacgccgataaaattttaagaaaatgacataattcaatgtaatcacaagtgtcg 13501084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 14373493 - 14373429
Alignment:
Q  40 acacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    ||||||||||||| || |||||||||   |||||||||||||| |||||||||| ||||||||||    
T  14373493 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 14373429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 159
Target Start/End: Original strand, 24067263 - 24067365
Alignment:
Q  57 aaattttgagataatgacataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgacaccgcacttgtcggacactgggacacgccttcaatc 156  Q
    |||||||| || |||||||||||||| ||||||||||||||| ||| |  |||| ||||| |||||  ||| || || |||||  |||| ||||||||||    
T  24067263 aaattttgtgaaaatgacataattcaatgtaatcacaagtgttggtttcatgtcggtgtcggacacaacacgtgccgaacactaagacatgccttcaatc 24067362  T
Q  157 aga 159  Q
    |||    
T  24067363 aga 24067365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 33884016 - 33884108
Alignment:
Q  12 acagacaccggaaacgacactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    ||||||| | || ||| |||| |||| ||||| || | |||||| ||||| ||||| |||||||| ||||| |||||| ||||||||||||||    
T  33884016 acagacatcagacacggcactgacacagacacatcgataccgataaaattgtgagaaaatgacatgattcagtgtaattacaagtgtcggtgt 33884108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 44984716 - 44984652
Alignment:
Q  40 acacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    ||||||| ||||| |||||||||||| | ||||| |||||||| ||| |||||||||||| ||||    
T  44984716 acacgtcgacacctatcaaattttgaaaaaatgatataattcaatgtgatcacaagtgtccgtgt 44984652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 11439781 - 11439844
Alignment:
Q  33 aacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagt 96  Q
    ||||| |||||||||| | |||| ||||| ||||| ||| |||||||||| |||||||||||||    
T  11439781 aacactgacacgtcaaaatcgataaaattatgagaaaataacataattcagtgtaatcacaagt 11439844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 104
Target Start/End: Complemental strand, 14450844 - 14450797
Alignment:
Q  57 aaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    ||||||||||| ||| |||||||||| |||||||||||||||| ||||    
T  14450844 aaattttgagaaaatcacataattcaatgtaatcacaagtgtcagtgt 14450797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 8300265 - 8300221
Alignment:
Q  60 ttttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    |||||||| |||||||||||| | |||||||| ||||||||||||    
T  8300265 ttttgagaaaatgacataatttagtgtaatcataagtgtcggtgt 8300221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 10535817 - 10535765
Alignment:
Q  48 acaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcg 100  Q
    |||||||| | | ||||||| |||||||||||||| |||||||| ||||||||    
T  10535817 acaccgataataatttgagaaaatgacataattcagtgtaatcataagtgtcg 10535765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 18512200 - 18512144
Alignment:
Q  48 acaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    |||||||| ||||||||||| ||| | |||||||| |||||||||| ||||| ||||    
T  18512200 acaccgataaaattttgagaaaataatataattcaatgtaatcacatgtgtcagtgt 18512144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 18570969 - 18571029
Alignment:
Q  44 gtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    |||||||||||| | | ||||||| |||||||||||||| |||||||| | ||||| ||||    
T  18570969 gtcaacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgt 18571029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 42874495 - 42874579
Alignment:
Q  20 cggaaacgacactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    |||| |||||||||||||||||||||| |||||| | | ||||||||| |||||||||||||| |||||||||||||||| ||||    
T  42874495 cggacacgacactaacacggacacgtcgacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgtcagtgt 42874579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 26915324 - 26915246
Alignment:
Q  22 gaaacgacactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcg 100  Q
    ||||||||||| ||||||||||||| |||| ||| ||||||||||| |||||||||||| | |||||||||||||||||    
T  26915324 gaaacgacactgacacggacacgtcgacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcg 26915246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 27733846 - 27733963
Alignment:
Q  46 caacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgacaccgcacttgtcggacactgggaca 145  Q
    |||||||||| ||||||||||| ||||| |||||||| ||||||||||||||| |||||  |||| |   | |||||   |||||||||||||  | |||    
T  27733846 caacaccgataaaattttgagaaaatgatataattcaatgtaatcacaagtgttggtgtcatgtcggacaccgacacaatacttgtcggacacccgaaca 27733945  T
Q  146 cgccttcaatcagaagtg 163  Q
    ||||||||||||||||||    
T  27733946 cgccttcaatcagaagtg 27733963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 27 - 179
Target Start/End: Complemental strand, 10497895 - 10497743
Alignment:
Q  27 gacactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgacaccgca 126  Q
    |||||| |||| |||||| | |||| ||| ||||||||||| ||| ||||||||   |||||||||||||||| || |  |||| |||||  |||    |    
T  10497895 gacactgacacagacacgccgacacggataaaattttgagaaaataacataatttgatgtaatcacaagtgtcagtatcgtgtcggtgtcgaacataata 10497796  T
Q  127 cttgtcggacactgggacacgccttcaatcagaagtgctggtgcaacagagct 179  Q
    | ||||  |||| |||||||||||||||||||| ||| | |||||||||||||    
T  10497795 catgtcaaacaccgggacacgccttcaatcagaggtgttcgtgcaacagagct 10497743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 31119097 - 31119140
Alignment:
Q  57 aaattttgagataatgacataattcactgtaatcacaagtgtcg 100  Q
    ||||||||||| |||||||||||||| |||||||||||||||||    
T  31119097 aaattttgagaaaatgacataattcaatgtaatcacaagtgtcg 31119140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 24295209 - 24295139
Alignment:
Q  34 acacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    |||| |||| ||| ||| |||| ||||| ||||| ||||||| |||| | |||||||||||||||||||||    
T  24295209 acactgacatgtcgacatcgataaaattgtgagaaaatgacacaatttaatgtaatcacaagtgtcggtgt 24295139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 22600490 - 22600579
Alignment:
Q  9 agcacagacaccggaaacgacacta-acacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtg 97  Q
    |||||||||||| || |||||||   |||| ||||| |||||||| || ||||||  ||| |||||||||||||| | ||||||||||||    
T  22600490 agcacagacaccagacacgacacacgacactgacacatcaacaccaataaaatttaaagaaaatgacataattcaatataatcacaagtg 22600579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 34074036 - 34073984
Alignment:
Q  48 acaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcg 100  Q
    |||||||| ||||||||| | |||||||||||| | |||||||| ||||||||    
T  34074036 acaccgataaaattttgaaaaaatgacataatttaatgtaatcataagtgtcg 34073984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 18946106 - 18946003
Alignment:
Q  34 acacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgacaccgcacttgtcg 133  Q
    |||||||| |||| |||||  ||||||||||||| |||||||||||||| ||||||||| |||||  |||||||||| |||||||||||  ||| |||||    
T  18946106 acacggacccgtcgacaccagtcaaattttgagaaaatgacataattcaatgtaatcacgagtgtgagtgtattgtcggtgtctgacacgacacgtgtcg 18946007  T
Q  134 gaca 137  Q
    ||||    
T  18946006 gaca 18946003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 40176595 - 40176660
Alignment:
Q  39 gacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    ||||||||||||||||| ||||||||||| |||||| | ||||| |||||||||| ||||| ||||    
T  40176595 gacacgtcaacaccgataaaattttgagaaaatgacttcattcaatgtaatcacatgtgtcagtgt 40176660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 24176811 - 24176873
Alignment:
Q  39 gacacgtcaacaccgatcaaattttgag-ataatgacataattcactgtaatcacaagtgtcg 100  Q
    ||||||||||||||||| |||||||||| | |||||||| ||| | |||||||||||||||||    
T  24176811 gacacgtcaacaccgataaaattttgagaaaaatgacatgatttaatgtaatcacaagtgtcg 24176873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 24462334 - 24462280
Alignment:
Q  42 acgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagt 96  Q
    ||||| |||| ||||||||||||| | |||||||||||||| |||||||||||||    
T  24462334 acgtcgacactgatcaaattttgaaaaaatgacataattcaatgtaatcacaagt 24462280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 18950911 - 18951002
Alignment:
Q  11 cacagacaccggaaacgacactaacacggacacgtcaacaccgatcaaattttgag-ataatgacataattcactgtaatcacaagtgtcgg 101  Q
    |||| ||| ||||||||| ||| ||||||||||| ||| ||||||  |||||| || | |||||||||||||| ||||||| || |||||||    
T  18950911 cacaaacatcggaaacgatactgacacggacacgacaataccgatacaattttaagaaaaatgacataattcagtgtaatcgcaggtgtcgg 18951002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 47989523 - 47989600
Alignment:
Q  73 acataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgacaccgcacttgtcggacactgggacacgcct 150  Q
    |||||||||| |||||| ||||||||||||||  |||| ||||| |||||  ||| |||| ||||  |||||||||||    
T  47989523 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacatgtctgacatcgggacacgcct 47989600  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 14332410 - 14332465
Alignment:
Q  48 acaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    |||||||| |||||| |||| |||||||||||||| ||||||||||  |||||||||    
T  14332410 acaccgataaaattt-gagaaaatgacataattcaatgtaatcacatatgtcggtgt 14332465  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 19369805 - 19369874
Alignment:
Q  35 cacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    |||||||||||  |||| ||| ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  19369805 cacggacacgttgacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgt 19369874  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 6751936 - 6751884
Alignment:
Q  52 cgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  6751936 cgataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgt 6751884  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 10031571 - 10031621
Alignment:
Q  48 acaccgatcaaattttgagataatgacataattcactgtaatcacaagtgt 98  Q
    |||||||| ||||||||||| |||||||||||||| |||||||||||||||    
T  10031571 acaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 10031621  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 1334629 - 1334718
Alignment:
Q  15 gacaccggaaacgacactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    ||||||||| |||||||| |||| ||||| |  |||| ||| ||||||||| | || ||||||||||| ||||||||||| |||||||||    
T  1334629 gacaccggacacgacactgacacagacacattgacacggataaaattttgaaaaaaggacataattcaatgtaatcacaaatgtcggtgt 1334718  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 177
Target Start/End: Complemental strand, 785494 - 785384
Alignment:
Q  67 ataatgacataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgacaccgcacttgtcggacactgggacacgccttcaatcagaagtgctg 166  Q
    |||||||||||||||| |||||||||||||||||||||  |||| |||||  |||       ||||||||||  |||||| ||||||||||||||||       
T  785494 ataatgacataattcaatgtaatcacaagtgtcggtgtcgtgtcggtgtcgaacatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtcc 785395  T
Q  167 gtgcaacagag 177  Q
    |||||||||||    
T  785394 gtgcaacagag 785384  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 5579649 - 5579707
Alignment:
Q  42 acgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcg 100  Q
    ||||| |||||||| ||||||||||| ||||||||| |||| |||| ||||||||||||    
T  5579649 acgtcgacaccgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgtcg 5579707  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 16766723 - 16766800
Alignment:
Q  73 acataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgacaccgcacttgtcggacactgggacacgcct 150  Q
    |||||||||| |||||| ||||||||||||||  |||| ||||| |||||  ||| |||| ||||| |||||||||||    
T  16766723 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacacgtgtccgacaccgggacacgcct 16766800  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 21395402 - 21395291
Alignment:
Q  11 cacagacaccggaaacgacactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgtattgtc 110  Q
    ||||||||||||| | ||||   |||| |||||| |||||||| | | | ||||||| ||| |||||||| | |||||| ||||||||||||||  ||||    
T  21395402 cacagacaccggatatgacatggacaccgacacgccaacaccgctaataatttgagaaaat-acataatttagtgtaattacaagtgtcggtgtcgtgtc 21395304  T
Q  111 agtgtctgacacc 123  Q
    |||||| ||||||    
T  21395303 agtgtcggacacc 21395291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 104
Target Start/End: Complemental strand, 26402717 - 26402682
Alignment:
Q  69 aatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    |||||||||||||| |||||||||||||||||||||    
T  26402717 aatgacataattcagtgtaatcacaagtgtcggtgt 26402682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 32297976 - 32298018
Alignment:
Q  40 acacgtcaacaccgatcaaattttgagataatgacataattca 82  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||    
T  32297976 acacgtcgacaccgatcaaattttgagaaaatgatataattca 32298018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 8365552 - 8365475
Alignment:
Q  73 acataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgacaccgcacttgtcggacactgggacacgcct 150  Q
    |||||||||  |||||| ||||||||||||||  |||| || || |||||  ||| |||| |||||||||||||||||    
T  8365552 acataattcggtgtaattacaagtgtcggtgtcgtgtcggtatcggacacgacacgtgtccgacactgggacacgcct 8365475  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 10157998 - 10158039
Alignment:
Q  61 tttgagataatgacataattcactgtaatcacaagtgtcggt 102  Q
    ||||||| |||||||||||||| |||||||||| ||||||||    
T  10157998 tttgagaaaatgacataattcaatgtaatcacatgtgtcggt 10158039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 22745938 - 22746014
Alignment:
Q  27 gacactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    |||||| |||| ||||| || |||| ||| ||||||||||| ||||  ||| |||| |||||||||||||||||||||    
T  22745938 gacactcacactgacacatcgacac-gataaaattttgagaaaatgttatatttcaatgtaatcacaagtgtcggtgt 22746014  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 34868223 - 34868170
Alignment:
Q  40 acacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcaca 93  Q
    ||||||| |||||||| ||||||||||| |||  ||||||||| ||||||||||    
T  34868223 acacgtcgacaccgataaaattttgagagaatatcataattcaatgtaatcaca 34868170  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 49179780 - 49179717
Alignment:
Q  41 cacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    |||||| |||||||| ||||||||||| | |||||||||||  |||||||||||||||||||||    
T  49179780 cacgtcgacaccgataaaattttgagaaagtgacataattcgatgtaatcacaagtgtcggtgt 49179717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 14338537 - 14338485
Alignment:
Q  52 cgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    |||| ||||||||| | |||||||||||||| ||||||||||| |||||||||    
T  14338537 cgataaaattttgaaaaaatgacataattcaatgtaatcacaaatgtcggtgt 14338485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 34834916 - 34834869
Alignment:
Q  129 tgtcggacactgggacacgccttcaatcagaagtgctggtgcaacaga 176  Q
    |||||||||| ||||||||||||||||||||||||   ||||||||||    
T  34834916 tgtcggacaccgggacacgccttcaatcagaagtgtccgtgcaacaga 34834869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 34409409 - 34409355
Alignment:
Q  39 gacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcaca 93  Q
    ||||||||||||||||| | | || |||| |||||||||||||| ||||||||||    
T  34409409 gacacgtcaacaccgataatacttcgagaaaatgacataattcaatgtaatcaca 34409355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 18180 - 18110
Alignment:
Q  34 acacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    |||| |||||||| |||||||| ||||||||||| ||| |||||||||| ||||||| ||||||| |||||    
T  18180 acactgacacgtcgacaccgataaaattttgagaaaataacataattcaatgtaatcgcaagtgttggtgt 18110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 8948 - 9005
Alignment:
Q  47 aacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 104  Q
    |||| |||| ||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  8948 aacatcgataaaattttgagaaaatgacataattcaacgtaatcacaagtgtcggtgt 9005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 9017 - 9051
Alignment:
Q  129 tgtcggacactgggacacgccttcaatcagaagtg 163  Q
    |||||||||| ||||||||||||||||||||||||    
T  9017 tgtcggacaccgggacacgccttcaatcagaagtg 9051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 8787 - 8679
Alignment:
Q  15 gacaccggaaacgacactaacacggacacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgtattgtcagtg 114  Q
    ||||||||| ||||||| |||| ||||| ||  |||  ||| ||||||||||| |||||||| ||||| ||||| ||||||||| | |||  ||||||||    
T  8787 gacaccggacacgacac-aacatggacatgttgacatggataaaattttgagaaaatgacatgattcaatgtaaccacaagtgtggttgtcgtgtcagtg 8689  T
Q  115 tctgacaccg 124  Q
    || |||||||    
T  8688 tcagacaccg 8679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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