View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3571_low_1 (Length: 553)
Name: NF3571_low_1
Description: NF3571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3571_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 47 - 537
Target Start/End: Complemental strand, 46032566 - 46032079
Alignment:
| Q |
47 |
attaattatattcatacttgtttttgtttggaatttagttgtggattgacgcttatgtccaacacatttggaaggagacgtttgcaattctgtttcatga |
146 |
Q |
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| T |
46032566 |
attaattatattcatacttgtttttgtttggaatttagttgtggattgacgcttatgtccaacacatttggaaggagacgtttgcaattctgtttcatga |
46032467 |
T |
|
| Q |
147 |
acaaattgccaaacagaattttcaccaagtccaccatcaaagctgagggagatgtaccacttcaaattgaactgcgtgatgttgaaaatcagcaacgcgt |
246 |
Q |
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| T |
46032466 |
acaaattgccaaacagaattttcactaagtccaccatcaaagctgagggagatgaaccacttcaaattgaactgcgtgatgttgaaaatcagcaacgcgt |
46032367 |
T |
|
| Q |
247 |
agtcatggaagagggttcccccatgaagatccaattatgtgtcctatatggtgactttgaaaaagaggattggacagctgaggaatttaatactcaaatt |
346 |
Q |
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| T |
46032366 |
agtcatggaagagggttcctccatgaagatccaattatgtgtcctatatggtgactttgaaaaagaggattggacagctgaggaatttaatactcaaatt |
46032267 |
T |
|
| Q |
347 |
gcacctccaagagagggaaaagaagaactgttgaaaggaaacaaattcattacactaagaaatattggagttgctgatatcgacaaagatattgagttta |
446 |
Q |
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| T |
46032266 |
gcacctccaagagagggaaaagaagaactgttgaaaggaaacgaattcattacactaagaaa---tggagttgctgatatcgacaaagagattgagttta |
46032170 |
T |
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| Q |
447 |
cagatatatcaaagggaagaaacggtcaatttcggctaggggttaaaatagttcaatcaaattcaattggagtgtgcattcgggaaggtag |
537 |
Q |
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| T |
46032169 |
cagatatatcaaagggaagaaacggtcaatttcggctaggggttaaaatagttcaatctaattcaattggagtgtgcattcgagaaggtag |
46032079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 40 - 537
Target Start/End: Complemental strand, 46019910 - 46019407
Alignment:
| Q |
40 |
aagcaaaattaattatattcatacttgtttttgtttggaatttagttgtggattgacgctta------tgtccaacacatttg---gaaggagacgtttg |
130 |
Q |
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||||||||| |||| |||| ||| |||||| ||||| ||||||| ||||||||||| |||| || ||||||||| || | |||||||||||| |
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| T |
46019910 |
aagcaaaatcaattgtattgatagttgtttgtgtttctaatttagctgtggattgacccttaacgagttggccaacacatatgagaggaggagacgtttg |
46019811 |
T |
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| Q |
131 |
caattctgtttcatgaacaaattgccaaacagaattttcaccaagtccaccatcaaagctgagggagatgtaccacttcaaattgaactgcgtgatgttg |
230 |
Q |
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| T |
46019810 |
caattgtgtttcatgaacaaaatgcctgaaacaattttcacaatgtccgaaatcaaagctgagggagatgaaccgcttcaaattgaactgcgtgatgctg |
46019711 |
T |
|
| Q |
231 |
aaaatcagcaacgcgtagtcatggaagagggttcccccatgaagatccaattatgtgtcctatatggtgactttgaaaaagaggattggacagctgagga |
330 |
Q |
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| T |
46019710 |
gaaatcagcaacgcatagtcagggaagaaggttcctcgatgaagatccaattatgtgtcctatatggtgactttgaaaaagaggattggacagctgagga |
46019611 |
T |
|
| Q |
331 |
atttaatactcaaattgcacctccaagagagggaaaagaagaactgttgaaaggaaacaaattcattacactaagaaatattggagttgctgatatcgac |
430 |
Q |
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|||||||||||||||| ||||||||||| ||||||| | |||| |||||||||| ||| |||||||||||||||| |||||||||||||||| || |
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| T |
46019610 |
gtttaatactcaaattgtacctccaagagttggaaaaggacaactactgaaaggaaataaaatcattacactaagaaa---tggagttgctgatatcaac |
46019514 |
T |
|
| Q |
431 |
aaagatattgagtttacagatatatcaaagggaagaaacggtcaatttcggctaggggttaaaatagttcaatcaaattcaattggagtgtgcattcggg |
530 |
Q |
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| T |
46019513 |
atagagattgagtttacagatatatcaaagagaagaaccggtcaatttcggctaggggttaaaatagttcaatctaattcaattggagcgtgcattcggg |
46019414 |
T |
|
| Q |
531 |
aaggtag |
537 |
Q |
| |
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||||||| |
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| T |
46019413 |
aaggtag |
46019407 |
T |
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