View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3571_low_12 (Length: 266)

Name: NF3571_low_12
Description: NF3571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3571_low_12
NF3571_low_12
[»] chr3 (19 HSPs)
chr3 (16-251)||(52204120-52204355)
chr3 (21-217)||(27164028-27164222)
chr3 (26-118)||(52203965-52204057)
chr3 (30-191)||(40614775-40614935)
chr3 (39-191)||(20369265-20369415)
chr3 (21-181)||(38489726-38489887)
chr3 (26-165)||(20179038-20179174)
chr3 (26-181)||(29324043-29324199)
chr3 (38-181)||(52695580-52695723)
chr3 (26-204)||(20619202-20619379)
chr3 (94-198)||(51241338-51241441)
chr3 (16-251)||(7629191-7629426)
chr3 (16-136)||(45472607-45472727)
chr3 (16-136)||(32835245-32835366)
chr3 (16-182)||(46979347-46979514)
chr3 (30-181)||(35296386-35296536)
chr3 (27-160)||(36504805-36504937)
chr3 (125-193)||(39615142-39615209)
chr3 (29-175)||(1341681-1341829)
[»] chr2 (24 HSPs)
chr2 (26-217)||(36467135-36467325)
chr2 (16-165)||(41323867-41324017)
chr2 (15-175)||(11562719-11562877)
chr2 (16-181)||(7017797-7017963)
chr2 (16-177)||(42794768-42794930)
chr2 (26-193)||(35298386-35298554)
chr2 (21-190)||(37272909-37273078)
chr2 (16-176)||(30485559-30485719)
chr2 (29-181)||(16496802-16496955)
chr2 (16-181)||(38221608-38221774)
chr2 (16-215)||(17328636-17328835)
chr2 (73-181)||(40498543-40498652)
chr2 (46-175)||(2788872-2789001)
chr2 (29-175)||(3353078-3353228)
chr2 (84-181)||(35428727-35428824)
chr2 (16-144)||(38558643-38558769)
chr2 (46-160)||(44364254-44364368)
chr2 (21-89)||(40498676-40498744)
chr2 (39-251)||(38140473-38140690)
chr2 (29-175)||(26352561-26352705)
chr2 (16-181)||(40363774-40363940)
chr2 (72-149)||(18561094-18561171)
chr2 (16-115)||(30382804-30382903)
chr2 (71-136)||(21812979-21813044)
[»] chr4 (22 HSPs)
chr4 (16-251)||(4775685-4775918)
chr4 (21-176)||(53586368-53586524)
chr4 (28-177)||(10037870-10038019)
chr4 (16-175)||(44987234-44987394)
chr4 (19-168)||(45773984-45774134)
chr4 (42-176)||(35823608-35823742)
chr4 (16-243)||(2295274-2295502)
chr4 (105-214)||(24913782-24913890)
chr4 (16-182)||(35103508-35103675)
chr4 (26-181)||(24917499-24917643)
chr4 (16-243)||(19721701-19721930)
chr4 (16-181)||(53018559-53018725)
chr4 (29-181)||(40217521-40217673)
chr4 (45-181)||(27675401-27675539)
chr4 (26-193)||(15476750-15476917)
chr4 (30-153)||(28102017-28102139)
chr4 (27-251)||(47922951-47923178)
chr4 (71-181)||(45661801-45661911)
chr4 (16-128)||(6008221-6008333)
chr4 (26-79)||(1052369-1052422)
chr4 (84-140)||(2242922-2242978)
chr4 (84-208)||(4110251-4110374)
[»] chr5 (18 HSPs)
chr5 (26-217)||(7057030-7057218)
chr5 (21-181)||(13407260-13407420)
chr5 (16-243)||(29231072-29231301)
chr5 (21-181)||(2627962-2628124)
chr5 (30-181)||(27925522-27925673)
chr5 (15-175)||(3387249-3387409)
chr5 (19-181)||(26564917-26565080)
chr5 (26-173)||(5836480-5836627)
chr5 (4-176)||(31113980-31114152)
chr5 (16-143)||(32076531-32076658)
chr5 (21-181)||(34510804-34510965)
chr5 (52-171)||(31210891-31211010)
chr5 (26-176)||(16756081-16756231)
chr5 (16-170)||(41368580-41368733)
chr5 (21-217)||(39935544-39935734)
chr5 (113-243)||(19100124-19100256)
chr5 (28-119)||(8229316-8229407)
chr5 (29-171)||(12118286-12118426)
[»] chr7 (18 HSPs)
chr7 (16-181)||(48152993-48153159)
chr7 (16-243)||(45648218-45648447)
chr7 (16-181)||(47843761-47843927)
chr7 (8-175)||(3751481-3751650)
chr7 (30-251)||(34471652-34471874)
chr7 (16-251)||(42040451-42040689)
chr7 (21-175)||(40836356-40836511)
chr7 (26-175)||(43495758-43495908)
chr7 (26-175)||(22201069-22201217)
chr7 (26-175)||(22236604-22236752)
chr7 (47-181)||(2185763-2185898)
chr7 (16-181)||(45492120-45492290)
chr7 (48-176)||(31397217-31397346)
chr7 (52-148)||(42509175-42509269)
chr7 (16-90)||(7857940-7858014)
chr7 (16-97)||(25310999-25311080)
chr7 (100-176)||(25482695-25482772)
chr7 (29-90)||(25482611-25482672)
[»] chr6 (12 HSPs)
chr6 (26-251)||(2988133-2988359)
chr6 (26-181)||(12312028-12312184)
chr6 (16-251)||(688074-688311)
chr6 (16-243)||(2032350-2032580)
chr6 (21-176)||(8485910-8486064)
chr6 (21-197)||(32340276-32340450)
chr6 (21-123)||(30928334-30928436)
chr6 (16-166)||(10229422-10229573)
chr6 (46-160)||(22053869-22053983)
chr6 (65-181)||(22297370-22297486)
chr6 (29-135)||(6724483-6724590)
chr6 (16-74)||(10567349-10567407)
[»] chr1 (21 HSPs)
chr1 (19-243)||(31513615-31513841)
chr1 (16-215)||(14286948-14287147)
chr1 (16-181)||(13558445-13558610)
chr1 (21-175)||(16122756-16122912)
chr1 (26-176)||(38682926-38683077)
chr1 (28-217)||(4973086-4973277)
chr1 (26-181)||(11767650-11767806)
chr1 (28-216)||(4966612-4966800)
chr1 (21-243)||(40693829-40694054)
chr1 (16-193)||(17116199-17116378)
chr1 (26-181)||(270896-271050)
chr1 (52-181)||(10443528-10443657)
chr1 (16-133)||(50726663-50726780)
chr1 (65-181)||(13643778-13643894)
chr1 (84-175)||(29488210-29488301)
chr1 (16-193)||(51898929-51899104)
chr1 (42-176)||(50709492-50709630)
chr1 (40-119)||(46594245-46594324)
chr1 (116-197)||(41827628-41827709)
chr1 (48-175)||(22791116-22791245)
chr1 (57-178)||(781814-781937)
[»] chr8 (21 HSPs)
chr8 (8-193)||(25429973-25430159)
chr8 (16-181)||(32855981-32856146)
chr8 (26-181)||(18928566-18928721)
chr8 (16-251)||(11789368-11789605)
chr8 (26-251)||(6166326-6166552)
chr8 (8-181)||(24888754-24888929)
chr8 (20-215)||(12006644-12006837)
chr8 (39-251)||(13003257-13003466)
chr8 (16-181)||(23877387-23877553)
chr8 (16-251)||(9409823-9410058)
chr8 (99-181)||(24728632-24728715)
chr8 (48-177)||(17748925-17749055)
chr8 (26-175)||(11990714-11990863)
chr8 (39-123)||(18320731-18320814)
chr8 (89-208)||(16591524-16591642)
chr8 (26-172)||(31431397-31431544)
chr8 (26-176)||(9136733-9136883)
chr8 (138-251)||(11755785-11755899)
chr8 (138-178)||(18320690-18320730)
chr8 (60-135)||(37231784-37231859)
chr8 (21-79)||(11755705-11755763)
[»] scaffold0565 (1 HSPs)
scaffold0565 (39-243)||(7802-8008)
[»] scaffold0495 (1 HSPs)
scaffold0495 (16-166)||(6137-6288)
[»] scaffold0581 (1 HSPs)
scaffold0581 (106-166)||(10046-10106)


Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 52204120 - 52204355
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    ||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  52204120 acaataagtataattttaagtagttcatcgggaaacaattttactcattcatatttaaaattgattcatatacatttctactaaatttttacaacattgt 52204219  T
Q  116 ctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataa 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  52204220 ctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctataagtatcagataa 52204319  T
Q  216 aaaagattaaaatttaaaataattaattatgatact 251  Q
    ||||||||||||||||||||||||||||||||||||    
T  52204320 aaaagattaaaatttaaaataattaattatgatact 52204355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 27164028 - 27164222
Alignment:
Q  21 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 120  Q
    |||| ||| ||||||| ||||||||||||| |||| || |||| ||||||||||||||| || ||||||| |||||| ||||| |||||| |||||||||    
T  27164028 aagtataaatttaagtggttcatcgagaaataattatattgatgcatatctaaaattgaatcatatacatctctactgaatttctacaacgttgtctcac 27164127  T
Q  121 tttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaa 217  Q
    ||| || ||||||||| |||||||||||||||| |||||| ||||||||||||||||||| ||||||| |||| ||| | ||| |||||||||||||    
T  27164128 ttt-tttcccttcatcttttctaggatacgtatatgtgaagtatcttataagtatccttg-tgtatctatggagtatccaataagtatcagataaaa 27164222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 26 - 118
Target Start/End: Original strand, 52203965 - 52204057
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctc 118  Q
    |||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  52203965 taattttaagtagttcatcgggaaacaattttactcattcatatttaaaattgattcatatacatttctactaaatttttacaacattgtctc 52204057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 191
Target Start/End: Complemental strand, 40614935 - 40614775
Alignment:
Q  30 tttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacc 129  Q
    ||||||| |||||||||||||||| | || ||||  ||||||||||||||  | ||||||| |||| | ||||||||||| ||||||||||||| |||||    
T  40614935 tttaagtggttcatcgagaaacaactctaatgatgtatatctaaaattgaaccatatacatctctaatgaatttttacaatattgtctcacttttttacc 40614836  T
Q  130 cttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtg 191  Q
     |||||| |||||| ||||||||| | |||| ||||||||||||||| ||| ||||||||||    
T  40614835 tttcatcttttctaagatacgtatctatgaagtatcttataagtatctttg-tgtatctgtg 40614775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 39 - 191
Target Start/End: Original strand, 20369265 - 20369415
Alignment:
Q  39 ttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcat 138  Q
    ||||||||||||||||| || |||| || |||||||||||| || ||||||| || | | |||||| |||||||||| ||||||| |||||||| ||| |    
T  20369265 ttcatcgagaaacaattatattgatgca-atctaaaattgaatcatatacatctcaaattaattttcacaacattgtatcacttttttacccttaatctt 20369363  T
Q  139 ttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtg 191  Q
    ||| |||||| |||| |||||||||||||||||||||||||| ||||||||||    
T  20369364 ttcaaggatatgtatatgtgaaatatcttataagtatccttg-tgtatctgtg 20369415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 38489726 - 38489887
Alignment:
Q  21 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 120  Q
    |||| ||||||||||| |||||||||||||||||| || | || ||||||||||||||| || ||||||| |||||| ||| ||||||||||| | ||||    
T  38489726 aagtataattttaagtggttcatcgagaaacaattatagttatgcatatctaaaattgaatcatatacatctctactgaatgtttacaacattatatcac 38489825  T
Q  121 tttcttacccttcatcatttctaggatacg--tatttgtgaaatatcttataagtatccttgt 181  Q
    ||| ||||  |||||  ||| |||||||||  ||| |||||||||||||||||||||| ||||    
T  38489826 ttttttactattcat-ttttttaggatacgtatatgtgtgaaatatcttataagtatcattgt 38489887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 165
Target Start/End: Original strand, 20179038 - 20179174
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    ||||||||||| ||||||| ||||||||||  |||||| ||||||||||||||| || ||||||  ||| || ||||| ||||||||||||||||||| |    
T  20179038 taattttaagtggttcatcaagaaacaattcaactgatacatatctaaaattgaatcatataca--tctcctgaatttctacaacattgtctcacttt-t 20179134  T
Q  126 tacccttcatcatttctaggatacgtatttgtgaaatatc 165  Q
    | ||||||||| |||||||||||||| | |||||| ||||    
T  20179135 tccccttcatcttttctaggatacgtttctgtgaagtatc 20179174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 181
Target Start/End: Complemental strand, 29324199 - 29324043
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    ||||||||||| |||||||||||||||||| || |||| ||||||||||||||| |  ||||||| | || | || ||||||||||||| |||||||| |    
T  29324199 taattttaagtggttcatcgagaaacaattatattgatgcatatctaaaattgaatgatatacatctttattgaagttttacaacattgcctcacttttt 29324100  T
Q  126 tacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    ||| |||||||  ||| ||||||||||||||||||| |||  || ||||||| ||||    
T  29324099 tactcttcatctttttttaggatacgtatttgtgaagtatagtagaagtatcattgt 29324043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 181
Target Start/End: Original strand, 52695580 - 52695723
Alignment:
Q  38 gttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatca 137  Q
    ||||||| ||||| |||| || |||| |||||||||||||||  | || |||| |||||  ||||||||||| ||||||||||||| | ||||||||||     
T  52695580 gttcatcaagaaataattctaatgatgcatatctaaaattgaaccatacacatctctacggaatttttacaaaattgtctcactttttgacccttcatct 52695679  T
Q  138 tttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    ||| ||||||| |||| |||||||||||||||||| ||| ||||    
T  52695680 tttataggataagtatctgtgaaatatcttataagcatctttgt 52695723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 204
Target Start/End: Complemental strand, 20619379 - 20619202
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    ||||||||||| ||| ||||| ||| |||| |||| || ||||||||||||||| || |||||||||| ||| |||||| |||||||||| | ||||| |    
T  20619379 taattttaagtggttgatcgaaaaataattatacttatgcatatctaaaattgaatcatatacatttccactgaattttcacaacattgtttgacttttt 20619280  T
Q  126 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatac 204  Q
    ||||||  ||  ||||||| |||| ||| | |||| |||||||||| |||||||| ||||||| |||| ||| ||||||    
T  20619279 taccctatatattttctagaatacatatatttgaagtatcttataaatatccttg-tgtatctatggagtatcctatac 20619202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 94 - 198
Target Start/End: Original strand, 51241338 - 51241441
Alignment:
Q  94 tactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtgga 193  Q
    |||| ||||||||||||||||||||||||| |||||| ||||| ||||||||||||||   |||||| ||||||||||||||| ||| ||||||||||||    
T  51241338 tactgaatttttacaacattgtctcacttttttacccatcatcttttctaggatacgttaatgtgaagtatcttataagtatctttg-tgtatctgtgga 51241436  T
Q  194 atatt 198  Q
     ||||    
T  51241437 gtatt 51241441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 7629191 - 7629426
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| |||||||||||  ||||||||||||||||| || |||| ||||||||||||||| || ||||||| | |  | |||||||||||||||||    
T  7629191 acaagaagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacatctattatgaatttttacaacattgt 7629290  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 214  Q
    ||||  || ||||  | ||||  ||||||||||| |  | |||||| ||||||| ||||||||||| ||||| |||||| |||   | | ||||| ||||    
T  7629291 ctca--tttttactgtgcatctttttctaggatatgcttctgtgaagtatcttagaagtatccttg-tgtatatgtggagtatcacacaagtatccgata 7629387  T
Q  215 aaaaa--gattaaaatttaaaataattaattatgatact 251  Q
    ||| |   ||||||| ||||||||||||||| |||||||    
T  7629388 aaatatttattaaaaattaaaataattaattctgatact 7629426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 45472727 - 45472607
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| |||||||| ||  ||||||||||||||||| || |||| ||||||||||||||| || ||||||| |||| | ||| |||||||||||||    
T  45472727 acaagaagtataattttacgtgattcatcgagaaacaattctagtgatgcatatctaaaattgaatcatatacatctctattgaatgtttacaacattgt 45472628  T
Q  116 ctcactttcttacccttcatc 136  Q
    || ||||| |||| |||||||    
T  45472627 ctaacttttttactcttcatc 45472607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 32835366 - 32835245
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattg--attcgtatacatttctactaaatttttacaacatt 113  Q
    ||||||||| ||||||||||| |||||| ||| ||||||| || | || ||||||||||||||  | || ||||||| || ||| |||||||||||||||    
T  32835366 acaataagtataattttaagtggttcattgagcaacaattctattaatgcatatctaaaattgaaaatcatatacatctcaactgaatttttacaacatt 32835267  T
Q  114 gtctcactttcttacccttcatc 136  Q
    |||||||||| ||||||||||||    
T  32835266 gtctcacttt-ttacccttcatc 32835245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 182
Target Start/End: Original strand, 46979347 - 46979514
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| |||||||||||  ||||||   |||||||| || | ||  |||||||||||||| || ||||||| | || | |||||||||||| ||||    
T  46979347 acaagaagtataattttaagtgattcatcagtaaacaattctattaatgtatatctaaaattgaatcttatacatctataatgaatttttacaacgttgt 46979446  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgtt 182  Q
    |||||||| |||| |||||||  |||||||||||||||| | |||| ||| ||| |||||||||||||    
T  46979447 ctcacttttttactcttcatctttttctaggatacgtatctttgaagtattttagaagtatccttgtt 46979514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 35296536 - 35296386
Alignment:
Q  30 tttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacc 129  Q
    |||||||  ||||||||||||||||| |||| || ||||||||||||||| ||||||| || |||||| |||||   | | ||||||||||||| ||||     
T  35296536 tttaagtgattcatcgagaaacaattatacttatgcatatctaaaattgaatcgtatatatctctactgaattt---ctatattgtctcacttttttaca 35296440  T
Q  130 cttcatcatttctaggatac--gtatttgtgaaatatcttataagtatccttgt 181  Q
    ||||||| |||||| |||||  |||| |  ||| ||||||||||||||| ||||    
T  35296439 cttcatcttttctatgatacatgtatctaggaagtatcttataagtatcattgt 35296386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 36504937 - 36504805
Alignment:
Q  27 aattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttctt 126  Q
    |||||||| | |||||||||||||||||| || |||| |||||||||||||||  | |||||| | ||||| || | |||||||||||||||||||  ||    
T  36504937 aattttaattggttcatcgagaaacaattctagtgatgcatatctaaaattgaaccatataca-tcctactgaa-tgttacaacattgtctcacttgttt 36504840  T
Q  127 acccttcatc-atttctaggatacgtatttgtgaa 160  Q
    || |||||||  |||||||||||||||| ||||||    
T  36504839 actcttcatctttttctaggatacgtatctgtgaa 36504805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 39615142 - 39615209
Alignment:
Q  125 ttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtgga 193  Q
    |||||||||||| |||||| |||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  39615142 ttacccttcatcttttctaagatacgtatttgtgaagtatcttataagtatcattg-tgtatctgtgga 39615209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 175
Target Start/End: Original strand, 1341681 - 1341829
Alignment:
Q  29 ttttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttac 128  Q
    |||||| ||||| ||||| |||||||| || |||||||||||| ||| ||| || ||| ||| |||| | |||||| ||||||   | | ||||| ||||    
T  1341681 ttttaattagttaatcgaaaaacaattataatgattcatatcttaaaatgaatcatatgcatctctattgaattttcacaacacaatataacttttttac 1341780  T
Q  129 ccttcatcatttct--aggatacgtatttgtgaaatatcttataagtat 175  Q
    |||||||  |||||  | ||||||| |||||||| |||| |||||||||    
T  1341781 ccttcattttttctccaagatacgtctttgtgaagtatcatataagtat 1341829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 26 - 217
Target Start/End: Complemental strand, 36467325 - 36467135
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    ||||||||||| ||||||||||||||||||||||| || ||||||||||||||| || |||||||||| ||| |||||||||||||||||||||||||||    
T  36467325 taattttaagtggttcatcgagaaacaattttacttatgcatatctaaaattgaatcatatacatttcaactgaatttttacaacattgtctcactttct 36467226  T
Q  126 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaa 217  Q
    ||||| ||||||| |||||  ||| ||| |||||| ||||||||||||||| ||| |||||||||||| ||| ||||| |||||||||||||    
T  36467225 tacccgtcatcatctctagtttacatatctgtgaagtatcttataagtatctttg-tgtatctgtggattatcctataagtatcagataaaa 36467135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 41324017 - 41323867
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| ||||||||||  |||||||||||||||||||||||||| ||||||||||||||| || ||||||| |||||| |||||||||||||||||    
T  41324017 acaagaagtataattttaagcggttcatcgagaaacaattttactgatgcatatctaaaattgaatcatatacatctctactgaatttttacaacattgt 41323918  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatc 165  Q
    |||||||| ||||| ||||||  |||||||||||| ||| |||||| ||||    
T  41323917 ctcacttttttaccgttcatctttttctaggatacatatatgtgaagtatc 41323867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 11562719 - 11562877
Alignment:
Q  15 tacaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattg 114  Q
    ||||| |||| ||||||||||| ||| |||||||||||||| |  ||||||||||| |||||||| || |||| || |||||| ||||| ||||||||||    
T  11562719 tacaagaagtataattttaagtggtttatcgagaaacaattgt--tgattcatatccaaaattgaatcatatatatctctactgaatttctacaacattg 11562816  T
Q  115 tctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtat 175  Q
    ||||||||| |||||||||||| ||||| | ||||||||||||||| ||||||||||||||    
T  11562817 tctcacttttttacccttcatcttttctcgaatacgtatttgtgaagtatcttataagtat 11562877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 7017963 - 7017797
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| ||||||||||| ||| |||||||||||||| |||  || ||||||||||||||| || ||||||| |||||| |||||||||||||||||    
T  7017963 acaagaagtataattttaagtggtttatcgagaaacaattctacccatgcatatctaaaattgaatcatatacatctctactgaatttttacaacattgt 7017864  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    |||||||| ||||||||||||  ||||||||| || ||| |||||| |||||||||| |||| ||||    
T  7017863 ctcacttttttacccttcatctttttctaggaaacatatatgtgaagtatcttataaatatctttgt 7017797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 42794768 - 42794930
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    ||||||||| |||||||||||  ||||||||||||||||| || |||| ||||||||||||||| ||  |||||| | || | |||||||||||||||||    
T  42794768 acaataagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcacatacatctataatgaatttttacaacattgt 42794867  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatcc 177  Q
    |||||||| |||| |||||||  |||||||||||||| |||||||| ||||  ||||||||||    
T  42794868 ctcacttttttactcttcatctttttctaggatacgtgtttgtgaagtatcccataagtatcc 42794930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 193
Target Start/End: Complemental strand, 35298554 - 35298386
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    ||||||||||| ||||||||||||| |||| || |||| ||| ||||||||||| |  ||||||| |||||| ||||||||||||||||||||||||| |    
T  35298554 taattttaagtggttcatcgagaaataattctattgatgcatttctaaaattgaattatatacatctctactgaatttttacaacattgtctcacttttt 35298455  T
Q  126 tacccttcatc--atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtgga 193  Q
    |||| || |||   ||||||| |||||||| |||||| |||||||||| |||| ||| ||||||||||||    
T  35298454 taccttttatcttttttctagaatacgtatatgtgaagtatcttataaatatctttg-tgtatctgtgga 35298386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 37272909 - 37273078
Alignment:
Q  21 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 120  Q
    |||| ||||||||||| ||||||||| ||||||||||| |||| ||| ||||||||||| || ||||||| |||||| ||||||||||||||||||| ||    
T  37272909 aagtataattttaagtggttcatcgaaaaacaattttattgatgcatgtctaaaattgaatcatatacatctctactgaatttttacaacattgtcttac 37273008  T
Q  121 tttcttacccttcatcatt-tctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgt 190  Q
    ||| ||||| |||||| || | |||  ||| ||| |||||||||||||| ||||||| ||| |||||||||    
T  37273009 ttttttacctttcatctttgtttagattacatatatgtgaaatatcttacaagtatcattg-tgtatctgt 37273078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 30485719 - 30485559
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| ||| ||||||| ||||| |||||||||||| || |||| |||||||||||||||  |  | |||| |||||| |||||||| | |||| |    
T  30485719 acaagaagtataaatttaagtggttcaccgagaaacaattctaatgatgcatatctaaaattgaaccacacacatctctactgaatttttagagcattat 30485620  T
Q  116 ctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatc 176  Q
    |||||||| ||||| |||||| ||||||| |||| ||||||||||||||||||||||||||    
T  30485619 ctcacttttttacctttcatcttttctagaatacatatttgtgaaatatcttataagtatc 30485559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 181
Target Start/End: Original strand, 16496802 - 16496955
Alignment:
Q  29 ttttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac-tttctta 127  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||| || ||||||| |  | | |||||| ||||||||||| ||| ||| |||    
T  16496802 ttttaagtggttcatcgagaaacaattttactgattcacatctaaaattgaatcatatacatcttcattgaattttcacaacattgtcccacttttttta 16496901  T
Q  128 cccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    | ||| ||| |||||||||||| ||| ||| || |||||||| |||||||||||    
T  16496902 ctctttatcttttctaggatacatatatgttaagtatcttattagtatccttgt 16496955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 38221608 - 38221774
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| |||||||||||  |||||| |||||||||| || |||| |||||| |||||||| || ||||||| |||| | ||| |||||||||||||    
T  38221608 acaagaagtataattttaagtgattcatcaagaaacaattctagtgatgcatatccaaaattgaatcatatacatctctattgaatgtttacaacattgt 38221707  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    |||||| | |||| |||||||  |||||||||||| ||| |||||| |||||| ||| |||||||||    
T  38221708 ctcactcttttactcttcatctttttctaggatacatatatgtgaagtatcttgtaaatatccttgt 38221774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 17328835 - 17328636
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| ||| ||||||| ||||  || |||||||||  ||| || ||||||||||||||| || ||||||| ||| || |||||||||||| ||||    
T  17328835 acaagaagtataactttaagtggttccccgtgaaacaattcgactaatgcatatctaaaattgaatcatatacatctctcctgaatttttacaaccttgt 17328736  T
Q  116 ctcactttcttacccttcatcattt-ctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 214  Q
    ||||||||  ||| ||||||| ||| ||||||||| ||| |||||| ||||||||||||||| ||| ||||||| |||| |||  |||| ||||| ||||    
T  17328735 ctcacttttctacgcttcatcttttcctaggatacatatatgtgaagtatcttataagtatcattg-tgtatctatggagtatcatataagtatccgata 17328637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 40498652 - 40498543
Alignment:
Q  73 aaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcattt-ctaggatacgtatttgtgaaatatcttataa 171  Q
    ||||||| |||||||||| |||||| ||| |||||||||||||||||||||  ||| ||||||| ||| ||||||||||||| | |||| ||||||||||    
T  40498652 aaattgaatcgtatacatctctactgaatgtttacaacattgtctcacttttatactcttcatcttttcctaggatacgtatatatgaagtatcttataa 40498553  T
Q  172 gtatccttgt 181  Q
     |||||||||    
T  40498552 atatccttgt 40498543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 175
Target Start/End: Complemental strand, 2789001 - 2788872
Alignment:
Q  46 agaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctagg 145  Q
    ||||||||||||||| || ||||| ||||||||| |  |||||||||| | |||| ||| |||| ||||||||||||| ||| | |||||| |||||| |    
T  2789001 agaaacaattttactaatgcatatttaaaattgaatgatatacatttccattaaactttcacaatattgtctcacttttttaacattcatcttttctatg 2788902  T
Q  146 atacgtatttgtgaaatatcttataagtat 175  Q
    ||| |||| |||||| |||| |||||||||    
T  2788901 atatgtatgtgtgaagtatcatataagtat 2788872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 175
Target Start/End: Complemental strand, 3353228 - 3353078
Alignment:
Q  29 ttttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttac 128  Q
    |||||| | ||| ||||| |||||||| || |||||||||||| ||||||| || |||||||||| | |||||||| ||||||| |||||||||| | ||    
T  3353228 ttttaactggttaatcgaaaaacaattataatgattcatatcttaaattgaatcatatacatttccattaaattttcacaacatagtctcactttttgac 3353129  T
Q  129 ccttcatcatttct----aggatacgtatttgtgaaatatcttataagtat 175  Q
     ||||||  ||| |    | ||||||| |||||||||||||||||||||||    
T  3353128 tcttcatttttttttttcaagatacgtctttgtgaaatatcttataagtat 3353078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 181
Target Start/End: Complemental strand, 35428824 - 35428727
Alignment:
Q  84 tatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    ||||||| || ||| |||||| | | |||||||||||||| |||||||||||| ||| || ||||||||| |||||| |||||| |||||||||||||    
T  35428824 tatacatctccactgaattttcagatcattgtctcacttttttacccttcatcttttgtaagatacgtatgtgtgaagtatcttctaagtatccttgt 35428727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 38558643 - 38558769
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||||||||||||||| ||||| |||||||||||| |||||||  |||||||||||||| ||| ||| || |  | |||||||| |||||  |||    
T  38558643 acaagaagtgtaattttaagtggttca-cgagaaacaattatactgatatatatctaaaattgaatcg-atatatcttcaataaattttcacaactctgt 38558740  T
Q  116 ctcactttcttacccttcatcatttctag 144  Q
    |||||||| ||||| |||||| |||||||    
T  38558741 ctcacttttttacctttcatcttttctag 38558769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 44364368 - 44364254
Alignment:
Q  46 agaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctagg 145  Q
    ||||||||||  | |||| | |||||||||||||  |||| |||| |||||| ||||||||||||| | ||||||||| |||||||||||| |||||| |    
T  44364368 agaaacaattccaatgatgcgtatctaaaattgaaccgtacacatctctactgaatttttacaacactatctcacttttttacccttcatcttttctaag 44364269  T
Q  146 atacgtatttgtgaa 160  Q
    | || ||||| ||||    
T  44364268 acacatatttatgaa 44364254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 40498744 - 40498676
Alignment:
Q  21 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtataca 89  Q
    |||| ||||||||||| |||||||||||||||||| || |||| ||||||||||||||| || ||||||    
T  40498744 aagtataattttaagtggttcatcgagaaacaattctagtgatgcatatctaaaattgaatcatataca 40498676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 251
Target Start/End: Complemental strand, 38140690 - 38140473
Alignment:
Q  39 ttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatt----tctactaaatttttacaacattgtctcactttcttacccttca 134  Q
    ||||||||||| ||||| || |||| ||||||||||||||| || |||||||     | || | |||| ||||||||||||||||| || |||| |||||    
T  38140690 ttcatcgagaa-caattatattgatgcatatctaaaattgaatcatatacatcaatctataatgaattcttacaacattgtctcacatttttactcttca 38140592  T
Q  135 tcatttc-taggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa--gattaaaattta 231  Q
    || |||| |||||||||||| |||||| ||||||  || |||| ||| ||||| |||||| |||   |||  |||| ||||||| |   ||||||| |||    
T  38140591 tcttttcttaggatacgtatatgtgaagtatcttggaaatatcattg-tgtatgtgtggagtatcacataaatatccgataaaatatttattaaaaatta 38140493  T
Q  232 aaataattaattatgatact 251  Q
    |||||||||||| |||||||    
T  38140492 aaataattaattttgatact 38140473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 175
Target Start/End: Complemental strand, 26352705 - 26352561
Alignment:
Q  29 ttttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttac 128  Q
    |||||| | ||| |||||||||||||| || ||| |||||||| ||||||| || || |||| || | | |||||| |||| |  | |||||||| ||||    
T  26352705 ttttaattggttaatcgagaaacaattatagtgactcatatcttaaattgaatcatacacatctccattgaattttcacaaaacagactcacttttttac 26352606  T
Q  129 ccttcatcatttctaggatacgtatttgtgaaatatcttataagtat 175  Q
    | |||||  ||| |||||||||| | |||||| ||||||||||||||    
T  26352605 ctttcat--tttttaggatacgtttatgtgaagtatcttataagtat 26352561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 40363940 - 40363774
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| ||||||||| |  |||||||| |||||||  || ||||   ||||||||||||| || || |||| | |||| ||| |||||||||||||    
T  40363940 acaaaaagtataattttaaattattcatcgacaaacaatcatagtgatctgtatctaaaattgaatcatacacatctttactgaatgtttacaacattgt 40363841  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    |||||||| || | |||  ||  ||||||||||| |||| |||||| ||| ||| ||||||| ||||    
T  40363840 ctcacttttttgctctttttctttttctaggataagtatctgtgaagtattttaaaagtatcattgt 40363774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 18561171 - 18561094
Alignment:
Q  72 aaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatac 149  Q
    |||||||| || |||||||||| ||| |||||| | |||||||||||||||| |||| ||||||  ||| ||||||||    
T  18561171 aaaattgaatcatatacatttccactgaattttcaaaacattgtctcacttttttactcttcatgttttataggatac 18561094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 115
Target Start/End: Original strand, 30382804 - 30382903
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| ||| ||||||| |||||||||||||||||| || ||||  |||||||||| |||    || |||| |||| | |||||||||||||||||    
T  30382804 acaagaagtataaatttaagtggttcatcgagaaacaattctaatgatgtatatctaaaagtgaacaatacacatctctaatgaatttttacaacattgt 30382903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 21813044 - 21812979
Alignment:
Q  71 taaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatc 136  Q
    ||||||||| || ||| |||||| | | ||||| ||||||||||||||||||| |||| |||||||    
T  21813044 taaaattgaatcatattcatttccattgaatttatacaacattgtctcacttttttactcttcatc 21812979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 4775918 - 4775685
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    ||||||||| ||||||||||| | | ||||||||||||||    |||| |||||||||||||||| | |||||||||| |||||||| | ||||||||||    
T  4775918 acaataagtataattttaagtggattatcgagaaacaattactttgatgcatatctaaaattgat-catatacatttccactaaattatcacaacattgt 4775820  T
Q  116 ctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataa 215  Q
    |||||||| |||||||||||| |||||||||||  ||||||||||  ||||||||||||| ||||  |||| ||| || ||||||||| ||||| |||||    
T  4775819 ctcacttttttacccttcatcttttctaggatatatatttgtgaagcatcttataagtattcttg-ggtatttgttgagtattctataagtatc-gataa 4775722  T
Q  216 aa-aagattaaaatttaaaataattaattatgatact 251  Q
    || |   |||||| |||||||||||||||||||||||    
T  4775721 aatatttttaaaaattaaaataattaattatgatact 4775685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 53586524 - 53586368
Alignment:
Q  21 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 120  Q
    |||| |||||||||||||||||||||||||||||| || |||| ||||||| ||||||| || ||||||| |||| | ||| ||||||||||||||||||    
T  53586524 aagtataattttaagtagttcatcgagaaacaattatagtgatgcatatctgaaattgaatcatatacatctctattgaatgtttacaacattgtctcac 53586425  T
Q  121 tttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatc 176  Q
    | | ||||||||||||  |||||||||||||||| |||||| |||||||||||||||    
T  53586424 tattttacccttcatctttttctaggatacgtatctgtgaagtatcttataagtatc 53586368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 10037870 - 10038019
Alignment:
Q  28 attttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttctta 127  Q
    ||||||||| |||||||||||||||| | ||||||| ||||||||||||||| || ||||||| || | | ||||||  ||||||||||||||||| |||    
T  10037870 attttaagtggttcatcgagaaacaaatctactgatgcatatctaaaattgaatcatatacatctccattgaattttcgcaacattgtctcactttttta 10037969  T
Q  128 cccttcatcatttctaggatacgtatttgtgaaatatcttataagtatcc 177  Q
    ||||||||| |||||||||||| ||| ||||||||||||||||| |||||    
T  10037970 cccttcatcttttctaggatacatatatgtgaaatatcttataattatcc 10038019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 44987394 - 44987234
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| |||||||||||||||||| ||||||||||| ||| ||| ||||||||||||||| || | ||||| || | | ||||||||||||||| |    
T  44987394 acaagaagtataattttaagtagttcattgagaaacaattctaccgatgcatatctaaaattgaatcatgtacatctcgagtgaatttttacaacattat 44987295  T
Q  116 ctcac-tttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtat 175  Q
    ||||| ||| ||||| |||||| |||||||||||||||||||||||| |||||||||||||    
T  44987294 ctcactttttttacctttcatcttttctaggatacgtatttgtgaaacatcttataagtat 44987234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 45774134 - 45773984
Alignment:
Q  19 ataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctc 118  Q
    |||||| ||||||||||| |||||||||||||||||| || ||||  |||||||||||||| || ||||||| | || | ||||||||||||||||||||    
T  45774134 ataagtataattttaagtggttcatcgagaaacaattctattgatgtatatctaaaattgaatcatatacatctataatgaatttttacaacattgtctc 45774035  T
Q  119 actttcttacccttcatc-atttctaggatacgtatttgtgaaatatctta 168  Q
    ||||| |||  |||||||  |||||||||||||||| |||||| |||||||    
T  45774034 acttttttattcttcatctttttctaggatacgtatctgtgaagtatctta 45773984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 42 - 176
Target Start/End: Original strand, 35823608 - 35823742
Alignment:
Q  42 atcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttc 141  Q
    |||||||||||||| |||| |||||||||||||||||| |  |||||||||| | ||  |||| ||||||||||||||||||||||||||||||| ||||    
T  35823608 atcgagaaacaattctactaattcatatctaaaattgaattatatacatttccaatattttttcacaacattgtctcactttcttacccttcatcttttc 35823707  T
Q  142 taggatacgtatttgtgaaatatcttataagtatc 176  Q
    || |||| | || | |||| |||||||||||||||    
T  35823708 tacgataggcatctttgaagtatcttataagtatc 35823742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 2295502 - 2295274
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| |||||||||||  ||||||||||||||||| || ||||  |||||| ||||||| || ||||||| | || | |||||||||||||||||    
T  2295502 acaagaagtataattttaagtgtttcatcgagaaacaattctattgatgaatatcttaaattgagtcctatacatctataatgaatttttacaacattgt 2295403  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 214  Q
    |||| ||| |||  |||||||  ||| |||||||||| | |||||| ||||||| ||||||| ||| |||||||||||||||| | |||  |||| ||||    
T  2295402 ctcaattt-ttattcttcatctttttttaggatacgtgtctgtgaagtatcttagaagtatcattg-tgtatctgtggaatatcccataaatatctgata 2295305  T
Q  215 aaaaa--gattaaaatttaaaataattaatt 243  Q
    ||| |   ||||||| |||||||||||||||    
T  2295304 aaatatttattaaaaattaaaataattaatt 2295274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 24913890 - 24913782
Alignment:
Q  105 tacaacattgtctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatac 204  Q
    |||||||| |||||||||| || ||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||| | |||     
T  24913890 tacaacatcgtctcacttttttccccttcatcttttctaggatacgtatctgtgaaatatcttataagtatccttg-tgtatctgcggagtatacaataa 24913792  T
Q  205 gtatcagata 214  Q
    ||||||||||    
T  24913791 gtatcagata 24913782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 182
Target Start/End: Original strand, 35103508 - 35103675
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| |||||||||||  ||||||  ||| ||||| || |||| ||||||||||||||| || ||||||||| || | |||||||||||||||||    
T  35103508 acaagaagtataattttaagtgtttcatccggaatcaattataatgatgcatatctaaaattgaatcatatacatttataatgaatttttacaacattgt 35103607  T
Q  116 ctcactttcttacccttcat-catttctaggatacgtatttgtgaaatatcttataagtatccttgtt 182  Q
    |||||||| |||| ||||||   |||||||||||| ||| | |||| ||||||| ||||||| |||||    
T  35103608 ctcacttttttactcttcatgtttttctaggatacatatctatgaagtatcttagaagtatctttgtt 35103675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 181
Target Start/End: Complemental strand, 24917643 - 24917499
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    ||||||||||| |||||||||||||||||| |||| ||  |||||||||||||| || |  |||| |||||           ||||| |||||||||| |    
T  24917643 taattttaagtggttcatcgagaaacaattctactaatgtatatctaaaattgaatctttaacatctctac-----------aacatcgtctcacttttt 24917555  T
Q  126 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    | ||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  24917554 tccccttcatcttttctaggatacgtatctgtgaaatatcttataagtatccttgt 24917499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 19721701 - 19721930
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| |||||||||||  || || ||||||||||| || |||| |||||| |||||| | || |||| || | || | |||||||||||||| ||    
T  19721701 acaagaagtataattttaagtgtttaattgagaaacaattctattgatgcatatccaaaattaagtcatatatatctataatgaatttttacaacatcgt 19721800  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 214  Q
    |||||||| |||| |||||||  |||||||||||||| | |||||| ||||||| || |||| ||| |||||||||||| |||   ||| ||||| ||||    
T  19721801 ctcacttttttactcttcatctttttctaggatacgtgtatgtgaagtatcttagaaatatcattg-tgtatctgtggagtatcacataagtatccgata 19721899  T
Q  215 aaaaa--gattaaaatttaaaataattaatt 243  Q
    ||| |   ||||||| |||||||||||||||    
T  19721900 aaatatttattaaaaattaaaataattaatt 19721930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 53018559 - 53018725
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    ||||||||| ||||||||| |  ||||| ||||||||||| || |||| ||||||||||||||| || ||||||  |  | | |||||||| || |||||    
T  53018559 acaataagtataattttaactgattcattgagaaacaattctattgatgcatatctaaaattgaatcatatacagctagaatgaatttttaaaagattgt 53018658  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    |||| ||| |||| |||||||  |||||||||||||||| |||||| ||||||| | ||||||||||    
T  53018659 ctcatttttttactcttcatctttttctaggatacgtatatgtgaagtatcttagatgtatccttgt 53018725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 181
Target Start/End: Complemental strand, 40217673 - 40217521
Alignment:
Q  29 ttttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttac 128  Q
    |||||||| ||| ||| |||||||||| ||| ||  ||||  ||||||||| || ||||||| | |||| |||||||| |||||||||||||||| ||||    
T  40217673 ttttaagt-gtttatcaagaaacaattctaccgacgcatacataaaattgaatcatatacatctttactgaatttttataacattgtctcacttttttac 40217575  T
Q  129 ccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    ||||||||  ||||||||||| |||| |||||| |||| |||||||||| ||||    
T  40217574 ccttcatctttttctaggatatgtatatgtgaagtatcatataagtatctttgt 40217521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 45 - 181
Target Start/End: Complemental strand, 27675539 - 27675401
Alignment:
Q  45 gagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttca--tcatttct 142  Q
    ||||||||||| || |||| ||||||||||||||| || ||||||| ||| || ||| || |||||||||||||||| | ||||||||||  |  |||||    
T  27675539 gagaaacaattctattgatgcatatctaaaattgaatcatatacatctctgctgaatcttcacaacattgtctcactattttacccttcattttttttct 27675440  T
Q  143 aggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    ||||||||||| |||||| | |||||||| | |||||||    
T  27675439 aggatacgtatatgtgaagtgtcttataaatgtccttgt 27675401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 193
Target Start/End: Original strand, 15476750 - 15476917
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    ||||||||||| |||||||   ||||||||  | | || ||||||||||||||| || || |||| | || | |||| ||||||||||||||||| || |    
T  15476750 taattttaagtggttcatcagtaaacaattcaattaatgcatatctaaaattgaatcttacacatctataatgaattcttacaacattgtctcacctttt 15476849  T
Q  126 tacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtgga 193  Q
    ||| |||||||  |||||| ||||||||| | |||| ||||||| ||||||||||| ||||||||||||    
T  15476850 tactcttcatctttttctaagatacgtatctttgaagtatcttagaagtatccttg-tgtatctgtgga 15476917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 28102017 - 28102139
Alignment:
Q  30 tttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacc 129  Q
    ||||||| ||||||||||||||||||||||| |||||||| ||||||||| |  ||||||| || ||| |||||| | ||||| |||||| ||| |||||    
T  28102017 tttaagtggttcatcgagaaacaattttacttattcatatataaaattgaataatatacatctcaactgaattttcataacatcgtctca-ttttttacc 28102115  T
Q  130 cttcatcatttctaggatacgtat 153  Q
    ||||||| ||| || | |||||||    
T  28102116 cttcatcttttataagttacgtat 28102139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 251
Target Start/End: Original strand, 47922951 - 47923178
Alignment:
Q  27 aattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttctt 126  Q
    |||||||| | ||||||| ||||||||||||| |||| | ||||||||||||| || |||  || |||||  | ||||||||||||| | ||||||| ||    
T  47922951 aattttaactggttcatcaagaaacaattttattgatgcgtatctaaaattgaatcatatggatctctacagagtttttacaacattatgtcactttgtt 47923050  T
Q  127 acccttca--tcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa--gat 222  Q
    || |||||  |  ||| || |||| |||  |||||| ||||||| ||||||| ||| |||||||||| |||||  |||| ||||| ||||||| |    |    
T  47923051 actcttcattttttttttaagatatgtaaatgtgaagtatcttagaagtatcattg-tgtatctgtgaaatatcatataagtatccgataaaatattttt 47923149  T
Q  223 taaaatttaaaataattaattatgatact 251  Q
    | ||| |||||||||||||||||||||||    
T  47923150 ttaaaattaaaataattaattatgatact 47923178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 45661911 - 45661801
Alignment:
Q  71 taaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttata 170  Q
    ||||||||| || ||||| || | ||| |||||| |||||||||||||||||| |||| ||||||| ||| |||||||  ||| | |||| |||| || |    
T  45661911 taaaattgaatcatatacgttcccactgaattttcacaacattgtctcacttttttactcttcatcttttataggatagatatctttgaagtatcgtaaa 45661812  T
Q  171 agtatccttgt 181  Q
    |||||| ||||    
T  45661811 agtatcattgt 45661801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 6008333 - 6008221
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| ||||||||||| |||||||||||||||||| || | || |||||||| |||||| || ||| | | ||| |||||| ||||  | ||||     
T  6008333 acaagaagtataattttaagtggttcatcgagaaacaattctagttatacatatctataattgaatcatatccctctctcctaaatgtttaacaaattgc 6008234  T
Q  116 ctcactttcttac 128  Q
    |||||||| ||||    
T  6008233 ctcacttttttac 6008221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 1052422 - 1052369
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattga 79  Q
    ||||||||||| ||| |||||||||||||| || |||| ||||| |||||||||    
T  1052422 taattttaagtggttaatcgagaaacaattctagtgatgcatatgtaaaattga 1052369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 2242922 - 2242978
Alignment:
Q  84 tatacatttctactaaatttttacaacattgtctcactttcttacccttcatcattt 140  Q
    ||||||| | || |||||||||| |||||||||||||||| ||||  ||||||||||    
T  2242922 tatacatctataataaatttttataacattgtctcacttttttactgttcatcattt 2242978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 208
Target Start/End: Original strand, 4110251 - 4110374
Alignment:
Q  84 tatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttg 183  Q
    |||||||||| ||| |||||| ||||||||||  |||||| |||| ||||||| |||  | ||||| ||| | | || ||||||| || ||| ||| ||     
T  4110251 tatacatttccacttaattttcacaacattgtaccacttttttactcttcatcttttaaaagatacatatctttaaagtatcttacaaatatactt-ttc 4110349  T
Q  184 tatctgtggaatattctatacgtat 208  Q
    |||||||||||||| ||||| ||||    
T  4110350 tatctgtggaatatcctataagtat 4110374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 26 - 217
Target Start/End: Complemental strand, 7057218 - 7057030
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    ||||||||||| ||||||||||| |||||| ||||||| ||||| ||||  ||| || ||||||| |||||| ||||| ||||||||||||||||||| |    
T  7057218 taattttaagttgttcatcgagacacaattatactgatccatatgtaaatgtgaatcatatacatctctactgaatttctacaacattgtctcacttt-t 7057120  T
Q  126 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaa 217  Q
    ||||||||||  |||||||||||| ||| ||||||  |||||||||||||||||| ||||||| |||| ||| ||||| |||||||||||||    
T  7057119 tacccttcat-ttttctaggatacatatatgtgaagcatcttataagtatccttg-tgtatctatggagtatcctataagtatcagataaaa 7057030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 13407260 - 13407420
Alignment:
Q  21 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 120  Q
    |||| ||||||||| | |||||||||||||||||| |||||||  |||||||||||||| || ||||  |||||||| ||||| |||||||||||||||     
T  13407260 aagtataattttaactggttcatcgagaaacaattatactgatgtatatctaaaattgaatcatataagtttctactgaatttctacaacattgtctcaa 13407359  T
Q  121 tttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    ||| ||  |||||||| ||||||||||||||||||||||  |||||||||| ||| |||||    
T  13407360 ttttttctccttcatcttttctaggatacgtatttgtgacgtatcttataaatattcttgt 13407420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 29231072 - 29231301
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| |||||||||||  ||||||||||||||||| || |||| ||||||||||||||| || ||||||| | || | |||||||||||||||||    
T  29231072 acaagaagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgt 29231171  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 214  Q
    |||||||| |||  |||||||  |||||||||||||| | |||||| ||||||| || |||||||| ||||| |||||| |||   ||| ||||| ||||    
T  29231172 ctcacttttttagtcttcatctttttctaggatacgtgtctgtgaagtatcttaaaaatatccttg-tgtatatgtggagtatcacataagtatccgata 29231270  T
Q  215 aaaaa--gattaaaatttaaaataattaatt 243  Q
    ||| |   ||||||| |||||||||||||||    
T  29231271 aaatatttattaaaaattaaaataattaatt 29231301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 21 - 181
Target Start/End: Original strand, 2627962 - 2628124
Alignment:
Q  21 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 120  Q
    |||| ||||||||||| ||||||||| |||||||| || | || ||||||||||||||| || ||||||| |||||| ||| ||||||||| ||||||||    
T  2627962 aagtataattttaagtggttcatcgataaacaattctaattatgcatatctaaaattgaatcatatacatctctactgaatgtttacaacactgtctcac 2628061  T
Q  121 tttcttacccttcatc--atttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    ||| |||| |||||||   |||||||||||| ||| |||||| ||||||||||||| ||||||    
T  2628062 ttttttactcttcatcttttttctaggatacatatatgtgaagtatcttataagtaaccttgt 2628124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 27925673 - 27925522
Alignment:
Q  30 tttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacc 129  Q
    ||||||| |||||||||||||||||| |||||||  |||||||||||||| || || | || ||| || ||||| ||||||||||||||| ||| ||||     
T  27925673 tttaagtggttcatcgagaaacaattctactgatgaatatctaaaattgaatcatagatatctctgctgaatttctacaacattgtctcatttttttaca 27925574  T
Q  130 cttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    ||||||| |||||||||||||||| |||||| |||||| ||||| |||||||    
T  27925573 cttcatcttttctaggatacgtatatgtgaagtatcttgtaagtgtccttgt 27925522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 3387409 - 3387249
Alignment:
Q  15 tacaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattg 114  Q
    ||||| |||| ||| ||||||| |||||| ||||||||||| || |||| ||||  |||||||||    || || | |||||| ||||||||||||||||    
T  3387409 tacaagaagtataaatttaagtggttcattgagaaacaattctaatgatgcataaataaaattgaaatatacacgtctctactgaatttttacaacattg 3387310  T
Q  115 tctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtat 175  Q
    ||||||||| |||||||||||| ||||||||||||||||||| |||  |||||||||||||    
T  3387309 tctcacttttttacccttcatcttttctaggatacgtatttgcgaagcatcttataagtat 3387249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 26565080 - 26564917
Alignment:
Q  19 ataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctc 118  Q
    |||||| ||||||||||| ||| ||| |||||||||| || |||| ||||||||||||||| || |||||||| ||| | ||| ||||||||||| ||||    
T  26565080 ataagtataattttaagtggtttatcaagaaacaattatagtgatacatatctaaaattgaatcatatacattgctattgaatgtttacaacattatctc 26564981  T
Q  119 actttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    ||||| |||| |||||||  |||||||||||  ||| | |||| ||||||||||||||| ||||    
T  26564980 acttttttactcttcatctttttctaggatagatatctttgaagtatcttataagtatctttgt 26564917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 173
Target Start/End: Complemental strand, 5836627 - 5836480
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    ||||||||||| |||||||||||||||||| ||| ||| ||||| ||||||||| || ||||||| |  ||| |||||| ||||||||||||||| ||      
T  5836627 taattttaagtggttcatcgagaaacaattataccgatacatatataaaattgaatcatatacatcttcactgaattttcacaacattgtctcacctttg 5836528  T
Q  126 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagt 173  Q
     |||||||||  ||||||| |||||||| | |||| ||||||||||||    
T  5836527 cacccttcatattttctagaatacgtatctctgaagtatcttataagt 5836480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 176
Target Start/End: Original strand, 31113980 - 31114152
Alignment:
Q  4 ttacccttcatt-acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatt 102  Q
    |||||||||||  |||| |||| ||||||||||| ||||| || |||||||||||||| || ||||||||||||||| || ||||||| ||| || ||||    
T  31113980 ttacccttcatccacaagaagtataattttaagtggttcaccgtgaaacaattttactaatgcatatctaaaattgaatcatatacatctctccttaatt 31114079  T
Q  103 tttacaacattgtctcactttcttacccttca-tcatttctaggatacgtatttgtgaaatatcttataagtatc 176  Q
    |||  || ||||||||||||| |||||||||| |  ||||||||||||  || || ||| |||||||||||||||    
T  31114080 ttt--aatattgtctcacttttttacccttcatttttttctaggatacacatatgcgaagtatcttataagtatc 31114152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 32076531 - 32076658
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| ||| ||||||| |||  |||||||||||||||| |||| |||||||||||||||    || |||| |||||| || ||||||||||||||    
T  32076531 acaagaagtataaatttaagtggtttgtcgagaaacaattttaatgatgcatatctaaaattgaactatacacatctctactgaaattttacaacattgt 32076630  T
Q  116 ctcactttcttacccttcatcatttcta 143  Q
    |||||||| |||||||||||| ||||||    
T  32076631 ctcacttttttacccttcatcttttcta 32076658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 181
Target Start/End: Complemental strand, 34510965 - 34510804
Alignment:
Q  21 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 120  Q
    |||| ||||||||||| ||||||||| ||||||| ||| | || |||||||||| || | || ||||||| |||| | | | ||||||| ||| ||||||    
T  34510965 aagtataattttaagtggttcatcgaaaaacaatgttagttatgcatatctaaatttaaatcatatacatctctattgagtgtttacaatattatctcac 34510866  T
Q  121 tttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    ||| |||| |||||||  |||||| ||||||||| | |||| ||||||||||||||||||||    
T  34510865 ttttttactcttcatctttttctacgatacgtatctctgaagtatcttataagtatccttgt 34510804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 171
Target Start/End: Original strand, 31210891 - 31211010
Alignment:
Q  52 aattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatacgt 151  Q
    |||| ||||||| ||| | ||||||| | || |||||||||||||| ||||||||||||| ||||||| ||| |||||||||||  |||||| ||||| |    
T  31210891 aattctactgatgcatgtttaaaattaaatcatatacatttctactgaatttttacaacactgtctcatttttttacccttcatattttctaagatacat 31210990  T
Q  152 atttgtgaaatatcttataa 171  Q
    || |||||| ||||||||||    
T  31210991 atctgtgaagtatcttataa 31211010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 176
Target Start/End: Original strand, 16756081 - 16756231
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    ||||||||||| ||  ||||| ||||||||||||| || ||||||||||||||| || ||||||| ||   | || |||  ||||||||||||||||| |    
T  16756081 taattttaagtggtcaatcgataaacaattttactaatgcatatctaaaattgaatcatatacatctccgttgaactttcgcaacattgtctcacttttt 16756180  T
Q  126 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatc 176  Q
    |  |||||||  |||||||||||| |||  || ||||||||||||||||||    
T  16756181 tgtccttcatattttctaggatacatatacgtaaaatatcttataagtatc 16756231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 41368733 - 41368580
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| ||||||| ||| ||||||| ||||||| ||  || ||| ||||||||||||||| |    ||||||||  || |||||| |||| |||||    
T  41368733 acaaaaagtataatttttagtggttcatcaagaaacatttacaccgatgcatatctaaaattgaataacgtacatttcg-ctgaattttcacaagattgt 41368635  T
Q  116 ctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttata 170  Q
    |||||||| ||||| |||||| ||||||||||| |||||||| |||||| |||||    
T  41368634 ctcacttttttacctttcatcttttctaggatatgtatttgtaaaatattttata 41368580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 39935734 - 39935544
Alignment:
Q  21 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 120  Q
    |||| ||| ||||||| ||| |||||||||||| | || ||||  ||||||||||||||  | |||     |||| | ||||||||||||||||||||||    
T  39935734 aagtataaatttaagtggtttatcgagaaacaactctaatgatgtatatctaaaattgaaccatatc----tctaatgaatttttacaacattgtctcac 39935639  T
Q  121 tttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaa 217  Q
    ||| ||| | |||||| ||||||| |||| ||| | | || ||||||||||||||| ||| ||||| ||| || |||| |||| ||||| |||||||    
T  39935638 ttttttatctttcatcttttctagcatacatatctat-aagtatcttataagtatctttg-tgtatatgtagagtattttatatgtatccgataaaa 39935544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 243
Target Start/End: Original strand, 19100124 - 19100256
Alignment:
Q  113 tgtctcactttcttacccttcatcattt-ctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcag 211  Q
    ||||||||||| |||| ||| ||| ||| ||||||||||||| |||||| ||||||| ||||||||||| ||||| |||||| |||   ||| ||||| |    
T  19100124 tgtctcacttttttactctttatctttttctaggatacgtatctgtgaagtatcttagaagtatccttg-tgtatatgtggagtatcacataagtatccg 19100222  T
Q  212 ataaaaaa--gattaaaatttaaaataattaatt 243  Q
    |||||| |   ||||||| |||||||||||||||    
T  19100223 ataaaatatttattaaaaattaaaataattaatt 19100256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 8229407 - 8229316
Alignment:
Q  28 attttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctca 119  Q
    |||||||||  ||||| ||||||||||| || |||| ||||||||||| | | || ||||||| |||| | ||| |||||||||||||||||    
T  8229407 attttaagtgattcattgagaaacaattctagtgatgcatatctaaaactaaatcatatacatctctattgaatgtttacaacattgtctca 8229316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 171
Target Start/End: Complemental strand, 12118426 - 12118286
Alignment:
Q  29 ttttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttac 128  Q
    |||||| ||||| ||||| ||||| || ||||||||||||||| ||||||| || |||||||||  | | |||||| ||||||     ||||||| ||||    
T  12118426 ttttaattagttaatcgaaaaacagttatactgattcatatcttaaattgaatcatatacattttcattgaattttcacaaca--cattcacttttttac 12118329  T
Q  129 ccttcatcatttctaggatacgtatttgtgaaatatcttataa 171  Q
    |||||||  |||| ||||||||||| ||| || ||| ||||||    
T  12118328 ccttcattttttccaggatacgtatctgtaaagtatattataa 12118286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 48153159 - 48152993
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| |||||| |||| |||||||||||||||||| || |||| ||| ||||||||||| |||||||||| |||||  ||| ||||||||||| |    
T  48153159 acaagaagtataatttcaagtggttcatcgagaaacaattctagtgatgcatgtctaaaattgaatcgtatacatctctacggaatgtttacaacatttt 48153060  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    |||||||| |||  |||||||  |||||||||||||||| |||||||||||||||||||||||||||    
T  48153059 ctcacttttttattcttcatctttttctaggatacgtatatgtgaaatatcttataagtatccttgt 48152993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 45648218 - 45648447
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| ||||||||||| ||||| |||||||||||| || |||| ||||||||||||||| || ||||||| | || | |||||||||||||||||    
T  45648218 acaagaagtataattttaagtggttcaccgagaaacaattctattgatgcatatctaaaattgaatcatatacatctataatgaatttttacaacattgt 45648317  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 214  Q
    |||||||| |||| | |||||  |||||||||||||||| |||||| ||||||| ||||||||||  |||||||||||| |||   ||| ||| | ||||    
T  45648318 ctcacttttttactcctcatctttttctaggatacgtatctgtgaagtatcttagaagtatcctt-atgtatctgtggagtatcacataagtacccgata 45648416  T
Q  215 aaaaa--gattaaaatttaaaataattaatt 243  Q
    ||| |   ||||||| |||||||||||||||    
T  45648417 aaatatttattaaaaattaaaataattaatt 45648447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 47843761 - 47843927
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| ||||||||||| |||| ||  |||||||||||| |||| ||||||||||||||| || ||||||| |||||| | |||||||||||||||    
T  47843761 acaagaagtataattttaagtggttcgtcaggaaacaattttattgatgcatatctaaaattgaatcatatacatctctactgagtttttacaacattgt 47843860  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    || ||||| ||||||||||||  ||||||||||||| ||  ||||| ||||||| ||||||||||||    
T  47843861 ctaacttttttacccttcatctttttctaggatacgcatacgtgaagtatcttagaagtatccttgt 47843927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 3751481 - 3751650
Alignment:
Q  8 ccttcatt-acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaattttta 106  Q
    |||||||| |||| |||| |||||||||||  |||||||||||||||||||| |||| ||||||||||||||| || ||||||| |||||||| |||| |    
T  3751481 ccttcattcacaagaagtataattttaagtgattcatcgagaaacaattttattgatgcatatctaaaattgaatcatatacatctctactaagttttca 3751580  T
Q  107 caacattgtctcac-tttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtat 175  Q
    |||||||||||||| ||| ||||||| |||| ||| || |||| |||| |||||| ||||||| ||||||    
T  3751581 caacattgtctcactttttttaccctgcatcttttttaagatatgtatatgtgaagtatcttaaaagtat 3751650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 34471874 - 34471652
Alignment:
Q  30 tttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacc 129  Q
    ||||||| | ||||| ||||||| || ||  ||| ||||||||||||||| |  ||||||| |||||| ||||| ||||||||||| ||||||| ||||     
T  34471874 tttaagtggctcatcaagaaacagttctagagatgcatatctaaaattgaattatatacatctctactgaatttctacaacattgtgtcacttttttaca 34471775  T
Q  130 cttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa--gattaaaa 227  Q
    ||||||  || ||||||||||||| |||||| |||||||||||||| |||| ||||||| || | ||| ||||| ||||||||||||| |    || |||    
T  34471774 cttcatatttcctaggatacgtatatgtgaagtatcttataagtattcttg-tgtatctatgaagtatcctataagtatcagataaaatatttttttaaa 34471676  T
Q  228 tttaaaataattaattatgatact 251  Q
     ||||||||||||||| |||||||    
T  34471675 attaaaataattaattctgatact 34471652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 42040451 - 42040689
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| |||||||||||  |||||||||| |||||| || |||| ||||||||||||||| || ||||||| | || | |||||||||||||||||    
T  42040451 acaagaagtataattttaagtgtttcatcgagagacaattctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgt 42040550  T
Q  116 ctcac-tttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagat 213  Q
    ||||| ||| |||| |||||||  ||||||| |||||| | || ||| ||||||| ||||||||||| ||||||||| || ||| | ||| ||||| |||    
T  42040551 ctcactttttttactcttcatctttttctagaatacgtgtctgcgaagtatcttagaagtatccttg-tgtatctgtagagtatcccataagtatccgat 42040649  T
Q  214 aaaaaa--gattaaaatttaaaataattaattatgatact 251  Q
    |||| |   ||||||| |||||||||  ||||||||||||    
T  42040650 aaaatatttattaaaaattaaaataaccaattatgatact 42040689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 40836511 - 40836356
Alignment:
Q  21 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 120  Q
    |||| ||||||||||| |||||||||||||||||| || |||| ||||||||||||||| || |||| || ||||||| || |||||||| |||||||||    
T  40836511 aagtataattttaagtggttcatcgagaaacaattctagtgatgcatatctaaaattgaatcatatagatctctactagatgtttacaacgttgtctcac 40836412  T
Q  121 tttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtat 175  Q
    ||| |||| | |||||  |||||| ||||||||| |||||| || |||||||||||    
T  40836411 ttttttactcctcatctttttctatgatacgtatctgtgaagtaccttataagtat 40836356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 26 - 175
Target Start/End: Original strand, 43495758 - 43495908
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| || |||| || ||||||  || ||||||| ||||||||||||| |    
T  43495758 taattttaagtggttcatcgagaaacaattttagtgatgcatatctaaaattgaatcatatatatctctactggatgtttacaagattgtctcacttttt 43495857  T
Q  126 tacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtat 175  Q
    ||| ||||| |  ||| |||||||| ||| |||||| ||||||||||||||    
T  43495858 tactcttcacctttttataggatacatatctgtgaagtatcttataagtat 43495908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 175
Target Start/End: Complemental strand, 22201217 - 22201069
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    ||||||||||| ||| |||||||||||||| ||| ||| || |||||||||| |  | ||||||| || ||| |||||||| |||||||||||| ||| |    
T  22201217 taattttaagtggtttatcgagaaacaattctaccgataca-atctaaaattaaaacatatacatctccactgaatttttagaacattgtctcatttttt 22201119  T
Q  126 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtat 175  Q
    |||| |||||| |||||| ||||||||  |||||| ||||||||||||||    
T  22201118 taccattcatcttttctatgatacgtacctgtgaagtatcttataagtat 22201069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 175
Target Start/End: Original strand, 22236604 - 22236752
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    ||||||||||| ||| |||||||||||||| ||| ||| || |||||||||| |  | ||||||| || ||| |||||||| |||||||||||| ||| |    
T  22236604 taattttaagtggtttatcgagaaacaattctaccgataca-atctaaaattaaaacatatacatctccactgaatttttagaacattgtctcatttttt 22236702  T
Q  126 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtat 175  Q
    |||| |||||| |||||| ||||||||  |||||| ||||||||||||||    
T  22236703 taccattcatcttttctatgatacgtacctgtgaagtatcttataagtat 22236752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 47 - 181
Target Start/End: Original strand, 2185763 - 2185898
Alignment:
Q  47 gaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatc-atttctagg 145  Q
    ||||||||| |||| || ||||||||||||||| || |||| || ||| || ||||||||||||||||||||  ||| ||||| || |||  ||||||||    
T  2185763 gaaacaattctactaatgcatatctaaaattgaatcatatatatctctccttaatttttacaacattgtctcgtttttttaccttttatctttttctagg 2185862  T
Q  146 atacgtatttgtgaaatatcttataagtatccttgt 181  Q
    |||| ||| |||||| ||||||||||||||||||||    
T  2185863 atacatatatgtgaagtatcttataagtatccttgt 2185898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 45492290 - 45492120
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| |||||||||||  ||||  | |||||||||  ||| || ||||||||||||||| || ||||| | ||| || |||||||||||||||||    
T  45492290 acaagaagtataattttaagtgattcactgtgaaacaattcgactaatgcatatctaaaattgaatcatatacgtctctcctgaatttttacaacattgt 45492191  T
Q  116 ctcactttctta----cccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    |||||||| |||    |||||||||  |||||||||||| ||| || ||| ||||||||||||||| ||||    
T  45492190 ctcacttttttaatttcccttcatctttttctaggatacatatatgcgaagtatcttataagtatcattgt 45492120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 176
Target Start/End: Original strand, 31397217 - 31397346
Alignment:
Q  48 aaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcattt-ctagga 146  Q
    |||||||| || ||||| |||||| ||||||| || |||| ||||| | | |||||| ||||||  |||||||||| ||||| ||| |  ||| | ||||    
T  31397217 aaacaattatagtgatttatatcttaaattgagtcatatatatttccattcaattttcacaacacagtctcacttttttacctttcgtttttttccagga 31397316  T
Q  147 tacgtatttgtgaaatatcttataagtatc 176  Q
    ||||||| ||||||| ||||||||||||||    
T  31397317 tacgtatgtgtgaaacatcttataagtatc 31397346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 42509269 - 42509175
Alignment:
Q  52 aattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggata 148  Q
    |||| |||| || ||| ||||||||||| |  |||| |||| |||| ||||||||||||||||||||||||| |||||| ||||| | |||||||||    
T  42509269 aattctactaatgcatgtctaaaattgaat--tatatatttttactgaatttttacaacattgtctcacttttttacccatcatcttgtctaggata 42509175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 7858014 - 7857940
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacat 90  Q
    ||||||| | || |||||||| |||||  ||||||||||| ||||| ||||||||||||||||| || |||||||    
T  7858014 acaataaatatatttttaagtggttcaatgagaaacaattctactgtttcatatctaaaattgaatcatatacat 7857940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 25310999 - 25311080
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctact 97  Q
    |||| |||| ||||||||||| ||||||| |||||||||| ||||| | ||||| ||||||| | || ||||||| ||||||    
T  25310999 acaagaagtataattttaagtggttcatcaagaaacaattatactgttgcatatttaaaatttaatcatatacatctctact 25311080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 176
Target Start/End: Original strand, 25482695 - 25482772
Alignment:
Q  100 atttttacaacattgtctcactttcttacccttcat-catttctaggatacgtatttgtgaaatatcttataagtatc 176  Q
    |||||||||||||||||||||||| |||   ||||| | ||||||  ||||||||||||||| ||||||| |||||||    
T  25482695 atttttacaacattgtctcacttttttaattttcatccttttctaaaatacgtatttgtgaagtatcttagaagtatc 25482772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 25482611 - 25482672
Alignment:
Q  29 ttttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacat 90  Q
    ||||||||  |||||||| |||||||| || |||| ||||||||||||||| || |||||||    
T  25482611 ttttaagtgtttcatcgaaaaacaattatattgatgcatatctaaaattgaatcatatacat 25482672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 26 - 251
Target Start/End: Original strand, 2988133 - 2988359
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| || ||||||| |||||| ||| |||| |||||| ||| ||||| |    
T  2988133 taattttaagtggttcatcgagaaacaattttagtgatgcatatctaaaattgaatcatatacatctctactgaatgtttataacattatctgacttt-t 2988231  T
Q  126 tacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa--gat 222  Q
    ||| |||||||  ||||||||||||||||||||||| ||||||||||||||| ||| |||||||| ||| |||  |||| ||||| | ||||| |    |    
T  2988232 tactcttcatctttttctaggatacgtatttgtgaactatcttataagtatcattg-tgtatctgcggagtatcgtataagtatccgttaaaatattttt 2988330  T
Q  223 taaaatttaaaataattaattatgatact 251  Q
    ||||| || |||||||||||| |||||||    
T  2988331 taaaaatttaaataattaattctgatact 2988359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 12312028 - 12312184
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtc-tcactttc 124  Q
    |||||| |||| ||| |||||||||||||| || |||| ||||||||||||||| | ||||||||||| ||| | |||| ||||||||||| | ||||||    
T  12312028 taatttaaagtggttgatcgagaaacaattctattgatgcatatctaaaattgaattgtatacatttccacttatttttcacaacattgtctttactttc 12312127  T
Q  125 ttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    |||||||||||  |||||||||||| ||| | |||| ||||||||||||||| ||||    
T  12312128 ttacccttcattttttctaggatacatatctttgaagtatcttataagtatcattgt 12312184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 688074 - 688311
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| ||||||||||| |||||||||||||||||| || |||| ||||||||||||||| |  ||||||| | || | |||||||||| ||||||    
T  688074 acaagaagtataattttaagtggttcatcgagaaacaattatattgatgcatatctaaaattgaataatatacatctataatgaatttttacagcattgt 688173  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 214  Q
    |||| ||| |||| |||||||  |||||  |||||||||  ||||| ||||||| ||||||||||| |||||| || || |||   ||| ||||| ||||    
T  688174 ctcatttttttactcttcatctttttctttgatacgtatacgtgaagtatcttagaagtatccttg-tgtatccgttgagtataacataagtatctgata 688272  T
Q  215 aaaaa--gattaaaatttaaaataattaattatgatact 251  Q
    ||| |   ||||||| ||||||||| ||||| |||||||    
T  688273 aaatatttattaaaaattaaaataaataattctgatact 688311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 2032350 - 2032580
Alignment:
Q  16 acaataagtgtaattttaagtagttcatc-gagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattg 114  Q
    |||| |||| |||||||||||  |||||| ||||||||||| || |||| ||||||||||||||| || |||||||   || | ||||||||||| ||||    
T  2032350 acaagaagtataattttaagtgtttcatccgagaaacaattctattgatgcatatctaaaattgagtcatatacatcaataatgaatttttacaatattg 2032449  T
Q  115 tctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagat 213  Q
    ||||||||| |||| ||||| |  |||||||||||| | | |||||| ||||||| ||||||||||| ||||| |||||| |||   |||  |||| |||    
T  2032450 tctcacttttttactcttcacctttttctaggatacatgtctgtgaagtatcttagaagtatccttg-tgtatatgtggagtatcacataaatatccgat 2032548  T
Q  214 aaaaaa--gattaaaatttaaaataattaatt 243  Q
    |||| |   ||||||| |||||||||||||||    
T  2032549 aaaatatttattaaaaattaaaataattaatt 2032580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 8486064 - 8485910
Alignment:
Q  21 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 120  Q
    |||| ||||||||||  ||||||| |||||||||| ||||||| ||||||||||||||| || ||||||| |  ||| || ||| |||||| | |||||     
T  8486064 aagtataattttaagcggttcatcaagaaacaattctactgatgcatatctaaaattgaatcatatacatctacactgaa-tttcacaacactatctcaa 8485966  T
Q  121 tttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatc 176  Q
    ||| |||||||| ||  |||||||||||||||| |||||| | |||||||||||||    
T  8485965 ttttttaccctttattttttctaggatacgtatatgtgaagtgtcttataagtatc 8485910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 197
Target Start/End: Original strand, 32340276 - 32340450
Alignment:
Q  21 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 120  Q
    |||| ||||||||| | ||||||||| |||||||| || |||| ||||| | ||||||| |  ||||||| | |||| |||||| |||||||||||||||    
T  32340276 aagtataattttaaatggttcatcgaaaaacaattctattgatgcatatatgaaattgaattatatacatctttactgaatttt-acaacattgtctcac 32340374  T
Q  121 tttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatat 197  Q
    ||| ||||||||||||  |||||||||||| ||| |||||| ||||||| || ||| |||| |||||||||| |||||    
T  32340375 ttttttacccttcatctttttctaggatacatatatgtgaagtatcttagaattat-cttg-tgtatctgtgaaatat 32340450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 30928436 - 30928334
Alignment:
Q  21 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 120  Q
    |||| ||||||||||| ||||||| |||||||||| ||||| | ||||| ||||||||| || ||||||| |||||| ||||| |||||||||||||| |    
T  30928436 aagtataattttaagtggttcatcaagaaacaattatactggtgcatatataaaattgaatcatatacatctctacttaatttctacaacattgtctcgc 30928337  T
Q  121 ttt 123  Q
    |||    
T  30928336 ttt 30928334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 10229573 - 10229422
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| ||||||||||| ||||||| | |||||||| || | || |||||||| |||||| || ||||||| ||||   ||| ||| |||||||||    
T  10229573 acaagaagtataattttaagtggttcatcaaaaaacaattctagttatgcatatctataattgaatcatatacatctctatcgaatgtttgcaacattgt 10229474  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatct 166  Q
    |||||||| |||| |||||||  |||  ||||||||||| ||||||||||||    
T  10229473 ctcacttttttactcttcatctttttgaaggatacgtatatgtgaaatatct 10229422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 22053983 - 22053869
Alignment:
Q  46 agaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctagg 145  Q
    ||||||||||  | |||| | |||||||||||||  |||| |||| |||||| ||||||||||||| | ||||||||| |||||||||||| |||||| |    
T  22053983 agaaacaattccaatgatgcgtatctaaaattgaaccgtacacatctctactgaatttttacaacactatctcacttttttacccttcatcttttctaag 22053884  T
Q  146 atacgtatttgtgaa 160  Q
    | || ||||| ||||    
T  22053883 acacatatttatgaa 22053869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 22297370 - 22297486
Alignment:
Q  65 catatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatc-atttctaggatacgtatttgtgaaata 163  Q
    ||||||||||||| | || ||||||| |||| | |||||||||||| |||||||||||| || |||||||||  ||| || ||||||| | |||||| ||    
T  22297370 catatctaaaattaagtcatatacatctctattgaatttttacaacgttgtctcacttt-tttcccttcatctttttttatgatacgtttctgtgaagta 22297468  T
Q  164 tcttataagtatccttgt 181  Q
      ||| ||||||||||||    
T  22297469 cgttacaagtatccttgt 22297486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 6724483 - 6724590
Alignment:
Q  29 ttttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctact-aaatttttacaacattgtctcactttctta 127  Q
    |||||| | ||| ||||| |||||||| ||||||||||||||| ||||||| || ||||||| || | | ||||||| ||||||  | |||||||| |||    
T  6724483 ttttaattggttaatcgaaaaacaattatactgattcatatcttaaattgaatcatatacatctccattgaaattttcacaacacagcctcactttttta 6724582  T
Q  128 cccttcat 135  Q
    || |||||    
T  6724583 ccattcat 6724590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 10567407 - 10567349
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaa 74  Q
    |||| |||| |||||||||||  ||||||||||||||||| || |||| ||||||||||    
T  10567407 acaagaagtataattttaagtgtttcatcgagaaacaattctattgatgcatatctaaa 10567349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 31513615 - 31513841
Alignment:
Q  19 ataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctc 118  Q
    |||||| ||||||||| |  ||||||||||||||||| || |||| ||||||||||||||| || ||||||  | || ||||||||||||||||||||||    
T  31513615 ataagtataattttaactgtttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacacctataataaatttttacaacattgtctc 31513714  T
Q  119 actttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaa 217  Q
    ||||| |||| | |||||  |||||||||||||| | |||||| ||||||| ||||||||||| |||||||||||| |||   ||| ||||| |||||||    
T  31513715 acttttttactcctcatctttttctaggatacgtgtctgtgaagtatcttagaagtatccttg-tgtatctgtggagtatcacataagtatccgataaaa 31513813  T
Q  218 aa--gattaaaatttaaaataattaatt 243  Q
     |   ||||||| |||||||||||||||    
T  31513814 tatttattaaaaattaaaataattaatt 31513841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 14287147 - 14286948
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| ||||||||||| ||||| || ||||||||| |||| || ||||||||||||||  || ||||||| ||| || |||||||||||||||||    
T  14287147 acaagaagtataattttaagtggttcaccgtgaaacaattctactaatgcatatctaaaattgcatcatatacatctctcctgaatttttacaacattgt 14287048  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 214  Q
    |||||||| || |||||||||  |||||||||||| ||| || ||| ||||||||||||||| ||| ||||||| |||| |||  |||| ||||| ||||    
T  14287047 ctcactttttttcccttcatctttttctaggatacatatatgcgaagtatcttataagtatcattg-tgtatctatggagtatcatataagtatccgata 14286949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 13558610 - 13558445
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| || |||||||  ||| | ||| |||||||||||||    
T  13558610 acaagaagtataattttaagtggttcatcgagaaacaattttagtgatgcatatctaaaattgaatcatatacatccctattgaatgtttacaacattgt 13558511  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    |||||||| |||| |||||||  ||| |||||||| ||| |||||| |||| ||||| |||||||||    
T  13558510 ctcacttttttactcttcatctttttttaggatacatatatgtgaagtatc-tataattatccttgt 13558445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 16122912 - 16122756
Alignment:
Q  21 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 120  Q
    ||||||||||| |||| ||||||| |||||||||| ||||||| ||||||||||||||| || |||||||||| | | || ||| |||||||||||||||    
T  16122912 aagtgtaatttgaagtggttcatcaagaaacaattatactgatgcatatctaaaattgaatcatatacatttccaatgaa-tttcacaacattgtctcac 16122814  T
Q  121 tttcttacccttcatcattt---ctaggatacgtatttgtgaaatatcttataagtat 175  Q
    ||| |||||||||||  |||   ||| ||||||||| |||||| ||||||||||||||    
T  16122813 ttttttacccttcattttttgtcctatgatacgtatatgtgaagtatcttataagtat 16122756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 26 - 176
Target Start/End: Original strand, 38682926 - 38683077
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    ||||||||||| ||| |||||||||||||| || |||| ||||||||||||||| || ||||||| || |||||||| |||||||||| | ||| ||| |    
T  38682926 taattttaagtggttaatcgagaaacaattctattgatgcatatctaaaattgaatcatatacatctccactaaattgttacaacattatttcatttttt 38683025  T
Q  126 tacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatc 176  Q
    |||||||||||  |||||||||||| ||| |||||| ||| ||| |||||||    
T  38683026 tacccttcatctttttctaggatacatatctgtgaagtattttagaagtatc 38683077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 217
Target Start/End: Original strand, 4973086 - 4973277
Alignment:
Q  28 attttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttctta 127  Q
    ||||||||| |||||||||||||||||| ||| |||  |||||||||||||| || |||| || || ||| ||||||||||| ||||||||||||| ||     
T  4973086 attttaagttgttcatcgagaaacaattctacagatgtatatctaaaattgaatcatatatatctccactgaatttttacaatattgtctcactttattg 4973185  T
Q  128 cccttca---tcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaa 217  Q
    |||||||   |  |||||||||||| ||| ||| || ||||||||||||||| ||| ||||| |||||| |||  |||| ||||| |||||||    
T  4973186 cccttcatttttttttctaggatacatatatgtaaagtatcttataagtatctttg-tgtatttgtggagtatcatataagtatctgataaaa 4973277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 11767650 - 11767806
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    ||||||||||| ||| ||||||||| |||| || | || ||||||||||||||| || |||| ||  ||||  |||||||||||||||||||||| || |    
T  11767650 taattttaagtggttaatcgagaaaaaattctagttatgcatatctaaaattgaatcatatatatcgctaccgaatttttacaacattgtctcacatttt 11767749  T
Q  126 tacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    ||| |||||||  |||||||||||||||| | |||| ||||||||||||||| ||||    
T  11767750 tactcttcatctttttctaggatacgtatctctgaagtatcttataagtatctttgt 11767806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 216
Target Start/End: Complemental strand, 4966800 - 4966612
Alignment:
Q  28 attttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttctta 127  Q
    ||||||||| |||||||||||||||||| ||| |||  |||||||||||||| || |||| || | || | || |||||||| ||||||||||||| |||    
T  4966800 attttaagttgttcatcgagaaacaattctacagatgtatatctaaaattgaatcatatatatctatagtgaa-ttttacaatattgtctcactttatta 4966702  T
Q  128 cccttca--tcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaa 216  Q
    |||||||  |  |||||||||||| ||| ||| || ||||||||||||||||||| ||||| |||||| |||  |||| ||||| ||||||    
T  4966701 cccttcattttttttctaggatacatatatgtaaagtatcttataagtatccttg-tgtatttgtggagtatcatataagtatccgataaa 4966612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 40694054 - 40693829
Alignment:
Q  21 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcac 120  Q
    |||| |||||||||||  |||||||| |||||||| || |||| ||||||||| ||||| || |||||||   || | ||||||||||||||||||||||    
T  40694054 aagtataattttaagtgtttcatcgaaaaacaattctattgatgcatatctaatattgagtcatatacatcaataatgaatttttacaacattgtctcac 40693955  T
Q  121 tttcttac-ccttcat-catttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaa 218  Q
    ||| |||| |||||||   ||||||| |||||| | |||||| ||||||| |||||| |||| |||||| ||||| |||   ||| ||||| |||||||     
T  40693954 ttttttactccttcatatttttctagaatacgtttctgtgaagtatcttagaagtattcttg-tgtatccgtggagtatcacatatgtatccgataaaat 40693856  T
Q  219 a--gattaaaatttaaaataattaatt 243  Q
    |   ||||||| |||||||||||||||    
T  40693855 atttattaaaaattaaaataattaatt 40693829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 17116378 - 17116199
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| |||||||||||  |||||||| ||| |||| || |||| ||||||||||||||| || ||||||| | ||   ||||||||||||||| |    
T  17116378 acaagaagtataattttaagtgtttcatcgaaaaataattctattgatgcatatctaaaattgagtcatatacatctataaagaatttttacaacattat 17116279  T
Q  116 ctcactttcttacccttcatc-atttctagg--atacgtatttgtgaaatatcttataagtatccttgttgtatctgtgga 193  Q
    |||||||| |||| |||||||  ||||||||  |||||| | |||||| ||||||| |||||| |||| ||||||||||||    
T  17116278 ctcacttttttactcttcatctttttctaggatatacgtgtatgtgaagtatcttagaagtattcttg-tgtatctgtgga 17116199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 181
Target Start/End: Complemental strand, 271050 - 270896
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    |||||||||||  ||||| |||||| |||| |||||||  |||||||||||||| || |||| || || |   |||||| |||||||||||| || || |    
T  271050 taattttaagtgattcatagagaaagaattatactgatgtatatctaaaattgaatcatatatatctccatcgaattttcacaacattgtcttacctt-t 270952  T
Q  126 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    || |||||||| |||||| ||| || |||||||||||||||||||||||| |||||    
T  270951 tatccttcatcttttctaagatgcgcatttgtgaaatatcttataagtattcttgt 270896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 181
Target Start/End: Complemental strand, 10443657 - 10443528
Alignment:
Q  52 aattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatacgt 151  Q
    |||| |||||||  |||||||||||||| || ||||||| ||||||  |||| ||||||||| ||||||||| |||  ||||||| |||||||||||| |    
T  10443657 aattctactgatgaatatctaaaattgaatcatatacatctctactggatttctacaacattctctcacttttttatacttcatcttttctaggatacat 10443558  T
Q  152 atttgtgaaatatcttataagtatccttgt 181  Q
    || ||| || ||||||  ||||||||||||    
T  10443557 atatgtaaagtatcttggaagtatccttgt 10443528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 50726780 - 50726663
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| ||||||||||   ||||||||||||||||| || |||  ||||||||||||||| || ||||||| | || | |||||||||||||||||    
T  50726780 acaagaagtataattttaagcgtttcatcgagaaacaattctattgacgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgt 50726681  T
Q  116 ctcactttcttacccttc 133  Q
    |||||||| |||| ||||    
T  50726680 ctcacttttttactcttc 50726663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 181
Target Start/End: Complemental strand, 13643894 - 13643778
Alignment:
Q  65 catatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttc-taggatacgtatttgtgaaata 163  Q
    ||||||||||||||| || ||||||| |||| | |||||||||||| |||||||||||| || ||||||||| |||| || ||||||| | |||||| ||    
T  13643894 catatctaaaattgaatcatatacatctctattgaatttttacaacgttgtctcacttt-tttcccttcatcttttcttatgatacgtgtatgtgaagta 13643796  T
Q  164 tcttataagtatccttgt 181  Q
     |||| ||||||||||||    
T  13643795 ccttacaagtatccttgt 13643778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 29488301 - 29488210
Alignment:
Q  84 tatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtat 175  Q
    ||||||| || |||||||||| ||||||  |||||||||| |  ||||||||  |||| |||||||||||  ||||| ||||||||||||||    
T  29488301 tatacatctccactaaattttcacaacaaagtctcactttttcccccttcattttttccaggatacgtatcagtgaagtatcttataagtat 29488210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 51898929 - 51899104
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| ||||||||||||  || |||||||||||||||||| ||  | | ||| ||||||||  | || |||||||||  ||  |||||| ||||| ||||    
T  51898929 acaagaagtgtaattttcggtggttcatcgagaaacaattatatcggtgcatgtctaaaataaaatcatatacattttcaccgaattttcacaactttgt 51899028  T
Q  116 ctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtgga 193  Q
    |||  ||| ||| ||| |||| ||  || ||||| ||||| |||||||||||||||| |||||||  |||||||||||    
T  51899029 ctccgtttttta-cctacatctttgataagatacatatttttgaaatatcttataagcatccttg-cgtatctgtgga 51899104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 176
Target Start/End: Complemental strand, 50709630 - 50709492
Alignment:
Q  42 atcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctca-ctttcttacccttcatcattt 140  Q
    ||||| |||||||| || |||||||||||| ||||||| || ||||||| || | | |||||| |||||| |||||||  ||| |||| ||||||  |||    
T  50709630 atcgaaaaacaattataatgattcatatcttaaattgaatcatatacatctccattgaattttcacaacactgtctcattttttttacacttcatttttt 50709531  T
Q  141 ct---aggatacgtatttgtgaaatatcttataagtatc 176  Q
     |   ||||||||| | ||| ||||||||||||||||||    
T  50709530 ttttcaggatacgtctctgtaaaatatcttataagtatc 50709492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 46594245 - 46594324
Alignment:
Q  40 tcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctca 119  Q
    ||||||| |||||||| || |||||||||||| ||||||| || ||||||| || | | |||||| ||||||| ||||||    
T  46594245 tcatcgaaaaacaattatagtgattcatatcttaaattgaatcatatacatctccattgaattttcacaacatagtctca 46594324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 41827709 - 41827628
Alignment:
Q  116 ctcactttcttacccttcatcattt-ctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatat 197  Q
    |||||||| |||| ||||||| ||| |||| |||||| | |||||| ||||||| ||||||||||| |||||||| |||||||    
T  41827709 ctcacttttttactcttcatctttttctagaatacgtgtctgtgaagtatcttagaagtatccttg-tgtatctgcggaatat 41827628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 22791116 - 22791245
Alignment:
Q  48 aaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctca-ctttcttacccttca-tcatttctagg 145  Q
    |||||||| || |||||||||||| ||||||| || ||||||| || | | |||||| ||||||  ||||||  ||| |||| ||||| |  |||| |||    
T  22791116 aaacaattgtagtgattcatatcttaaattgaatcatatacatatccattgaattttcacaacacagtctcattttttttacacttcatttttttccagg 22791215  T
Q  146 atacgtatttgtgaaatatcttataagtat 175  Q
    |||||| |||||||| || |||||||||||    
T  22791216 atacgtctttgtgaagtaacttataagtat 22791245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 178
Target Start/End: Complemental strand, 781937 - 781814
Alignment:
Q  57 tactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatacgtatttg 156  Q
    ||||| ||||||||||||||||| || ||||||| |  | | |||||| ||||||||||||||  || ||| | |||||| || |||| |||  ||| ||    
T  781937 tactgtttcatatctaaaattgaatcatatacatattcattgaattttcacaacattgtctcaaatttttaactttcatctttcctagtataattatctg 781838  T
Q  157 tgaa--atatcttataagtatcct 178  Q
    ||||  ||||||||||| ||||||    
T  781837 tgaagtatatcttataaatatcct 781814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 25430159 - 25429973
Alignment:
Q  8 ccttcatt-acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaattttta 106  Q
    |||||||| |||| |||| ||||||||||| |||||||| ||||||||| |||| || ||||||||||||||| || |||| || | |  | ||||||||    
T  25430159 ccttcattcacaagaagtataattttaagtggttcatcgtgaaacaattctactaatgcatatctaaaattgaatcatatatatctgtcatgaattttta 25430060  T
Q  107 caacattgtctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtgga 193  Q
    ||||||||||||||||| ||||||||||||  |||||||||||| ||| || ||| ||||||||||||||||||| ||||||||||||    
T  25430059 caacattgtctcacttttttacccttcatctttttctaggatacatatatgcgaagtatcttataagtatccttg-tgtatctgtgga 25429973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 32856146 - 32855981
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| || |||||||| |||||||||||||||||| || |||| ||||||||||||||| || ||||||| |||||| ||| |||||||||||||    
T  32856146 acaagaagtatagttttaagtggttcatcgagaaacaattctagtgat-catatctaaaattgaatcatatacatctctactgaatgtttacaacattgt 32856048  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    ||| |||| |||| |||||||  |||||||||||||||| |||||| ||||||||||||||| ||||    
T  32856047 ctcgcttttttactcttcatctttttctaggatacgtatctgtgaagtatcttataagtatcattgt 32855981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 18928566 - 18928721
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| || ||||||| || | | ||||||||||||||||||||| ||| |    
T  18928566 taattttaagtggttcatcgagaaacaattctactgatgcatatctaaaattgaatcatatacatctcaattcaatttttacaacattgtctcaattttt 18928665  T
Q  126 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    ||| | ||||  ||||||||||| |||| ||| || ||||||||||||||| ||||    
T  18928666 tactcctcatattttctaggataagtatatgtaaagtatcttataagtatcattgt 18928721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 11789368 - 11789605
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| |||||||||||  |||||||||||||| || || |||| ||||||||||||||| || ||||||| | || | |||||||||||||||||    
T  11789368 acaagaagtataattttaagtgtttcatcgagaaacagttctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgt 11789467  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 214  Q
    ||||||||||||| |||||||  ||||||||||| || | |||||| ||||||  ||||||| ||| ||||| |||||| |||   | | ||||| ||||    
T  11789468 ctcactttcttactcttcatctttttctaggatatgtgtctgtgaagtatcttggaagtatcattg-tgtatttgtggagtatcacacaagtatccgata 11789566  T
Q  215 aaaaa--gattaaaatttaaaataattaattatgatact 251  Q
    ||| |   ||||||| ||||||||||||||| |||||||    
T  11789567 aaatatttattaaaaattaaaataattaattctgatact 11789605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 251
Target Start/End: Complemental strand, 6166552 - 6166326
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    |||||||||||  ||||||||||| ||||| ||||||| ||||||||||||||| || ||||||||| || | ||||||||||||||||||||||||| |    
T  6166552 taattttaagtgtttcatcgagaatcaattatactgatgcatatctaaaattgaatcatatacatttataatgaatttttacaacattgtctcacttttt 6166453  T
Q  126 tacccttcat-catttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa--gat 222  Q
    ||| ||||||   |||||||||||||||| | | || ||||||| || |||||||| ||||| ||| || |||   ||| ||||| ||||||| |   ||    
T  6166452 tactcttcatgtttttctaggatacgtatctataaagtatcttagaaatatccttg-tgtatatgtagagtatcacataagtatccgataaaatatttat 6166354  T
Q  223 taaaatttaaaataattaattatgatact 251  Q
    ||||| ||||||||||||| |||||||||    
T  6166353 taaaaattaaaataattaa-tatgatact 6166326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 24888754 - 24888929
Alignment:
Q  8 ccttcatt-acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaattttta 106  Q
    |||||||| |||| |||| ||||||||||| ||||| || ||||||||| |||| || ||||||||||||||| || |||| |||| |  | ||||||||    
T  24888754 ccttcattcacaagaagtataattttaagtggttcaccgtgaaacaattctactaatgcatatctaaaattgaatcatatatatttgtcatgaattttta 24888853  T
Q  107 caacattgtctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    ||| ||||||||||||  ||||||||||||  ||| |||||||| ||| || ||| ||||||||||||||||||||    
T  24888854 caatattgtctcacttgtttacccttcatctttttttaggatacatatatgcgaagtatcttataagtatccttgt 24888929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 12006837 - 12006644
Alignment:
Q  20 taagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctca 119  Q
    ||||| ||||||||||  ||||||| | |||||||| || |||| ||||||||||||||| || ||||||| || ||| |||||| ||||||||||| ||    
T  12006837 taagtataattttaagcggttcatcaaaaaacaattctagtgatgcatatctaaaattgaatcatatacatctccactgaattttcacaacattgtc-ca 12006739  T
Q  120 ctttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataa 215  Q
    |||| | |||||| ||  |||||||||| ||||| || ||||||||||||||||| |  || ||||| |||||| ||| ||||| ||||| |||||    
T  12006738 ctttttcaccctttattttttctaggatgcgtatatgggaaatatcttataagta-cactggtgtatttgtggagtatcctataagtatccgataa 12006644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 251
Target Start/End: Complemental strand, 13003466 - 13003257
Alignment:
Q  39 ttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcat 138  Q
    ||||||||||||||||| || | || ||||||||||||||| || ||||||  |||| | ||||| ||||||||||||||||||| |||| ||||||  |    
T  13003466 ttcatcgagaaacaattctagttatgcatatctaaaattgaatcatataca--tctattgaatttctacaacattgtctcacttt-ttacacttcatatt 13003370  T
Q  139 ttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaa-aagattaaaatttaaaataa 237  Q
    ||||| ||| | ||| ||||||||||||| |||||||| ||| || |||| |||| |||  |||| |||| |||||||| |   || ||| |||||||||    
T  13003369 ttctacgatgcatatatgtgaaatatcttgtaagtatctttg-tgaatctatggagtatcatataagtattagataaaatattttttaaaattaaaataa 13003271  T
Q  238 ttaattatgatact 251  Q
    ||||||||||||||    
T  13003270 ttaattatgatact 13003257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 23877387 - 23877553
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    ||||||||| ||||||||||| ||||||||  |||||||| || | || ||||||||||||||| || |||| || |||||| ||| ||||||||||  |    
T  23877387 acaataagtataattttaagtggttcatcggaaaacaattctagtcatgcatatctaaaattgaatcatatatatctctactgaatgtttacaacatgat 23877486  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    ||||||||||||| |||||||  ||| ||||||| || | |||||| ||| ||||||||||| ||||    
T  23877487 ctcactttcttactcttcatctttttgtaggatatgtttatgtgaagtattttataagtatcattgt 23877553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 9410058 - 9409823
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| |||||||||||  |||||||||||| |||| || ||||  |||| ||||||||| || ||||||| | || | ||||||||||| |  ||    
T  9410058 acaagaagtataattttaagtgtttcatcgagaaataattctattgatgaatatgtaaaattgagtcatatacatctataatgaatttttacaaaa--gt 9409961  T
Q  116 ctcactttcttacccttca-tcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagata 214  Q
    || ||||| |||| ||||| |  |||||||||||| | | | |||| ||||||| ||||||||||| |||||||||||| ||| | ||| ||||| ||||    
T  9409960 cttacttttttactcttcatttttttctaggatacatgtctctgaagtatcttagaagtatccttg-tgtatctgtggagtatcccataagtatccgata 9409862  T
Q  215 aaaaa--gattaaaatttaaaataattaattatgatact 251  Q
    | | |   ||||||| |||||||||||||||||||||||    
T  9409861 acatatttattaaaaattaaaataattaattatgatact 9409823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 24728632 - 24728715
Alignment:
Q  99 aatttttacaacattgtctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatcttataagtatccttgt 181  Q
    ||||||||||||||||||||||||| ||||||||||||  |||||||||||| ||| || ||| ||||||||||||||||||||    
T  24728632 aatttttacaacattgtctcacttttttacccttcatctttttctaggatacatatatgcgaagtatcttataagtatccttgt 24728715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 17748925 - 17749055
Alignment:
Q  48 aaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatcattt-ctagga 146  Q
    |||||||| || |||| ||||||  ||||||| || ||||||| |||||| ||| | |||||| |||||||||||| |||| |||| |  ||| ||||||    
T  17748925 aaacaattctagtgatgcatatcataaattgaatcatatacatctctactgaatgtatacaacgttgtctcacttttttactcttcgtatttttctagga 17749024  T
Q  147 tacgtatttgtgaaatatcttataagtatcc 177  Q
    |||||||||||||| ||||||||||||||||    
T  17749025 tacgtatttgtgaagtatcttataagtatcc 17749055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 175
Target Start/End: Complemental strand, 11990863 - 11990714
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    ||||||| ||| ||| ||| |||||||||| |||| || ||||||||||||||| |  ||||||| || ||| ||||||  ||||| |||| ||||||      
T  11990863 taatttttagtggtttatctagaaacaattctactaatgcatatctaaaattgagttatatacatatccactgaattttcgcaacaatgtcacacttttc 11990764  T
Q  126 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtat 175  Q
    ||||||||||| ||||||||||| |||| | | || ||| ||||||||||    
T  11990763 tacccttcatcttttctaggatatgtatattttaagtattttataagtat 11990714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 18320814 - 18320731
Alignment:
Q  39 ttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcacttt 123  Q
    |||||| ||||||| || |||| || ||||||||||||||| || ||||||| || |||||| ||| ||||||||||||||||||    
T  18320814 ttcatcaagaaacatttctacttatgcatatctaaaattgaatcatatacatctccactaaa-tttcacaacattgtctcacttt 18320731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 208
Target Start/End: Original strand, 16591524 - 16591642
Alignment:
Q  89 atttctactaaatttttacaacattgtctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatct 188  Q
    ||||| |||||||||| ||||||||||||| |||| |||| ||| ||  ||| |||||||| || || |||| ||| ||||||||||| ||| |||| ||    
T  16591524 atttccactaaattttcacaacattgtctcgcttttttactcttaattttttataggatacatacttttgaagtattttataagtatctttg-tgtaact 16591622  T
Q  189 gtggaatattctatacgtat 208  Q
    || || ||||||||| ||||    
T  16591623 gtagagtattctataagtat 16591642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 172
Target Start/End: Original strand, 31431397 - 31431544
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaa-aattgattcgtatacatttctactaaatttttacaacattgtctcactttc 124  Q
    ||||||||||| ||||||| | |||||||| || | || ||||||||| |||||| || ||||||| |   || ||||||||||| ||||||||||| |     
T  31431397 taattttaagtggttcatcaaaaaacaattctattaatacatatctaataattgaatcatatacatctgcgctgaatttttacaatattgtctcactctt 31431496  T
Q  125 ttacccttcatcatttctaggatacgtatttgtgaaatatcttataag 172  Q
    ||| ||| |||| |||||||| || |||| | | || |||||||||||    
T  31431497 ttatcctccatcttttctaggttatgtatatctaaattatcttataag 31431544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 176
Target Start/End: Original strand, 9136733 - 9136883
Alignment:
Q  26 taattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttct 125  Q
    ||||||||| | ||| ||||| |||||||| || |||||| ||| | ||||||| || ||||  | || | | |||||| ||||||   ||||||||| |    
T  9136733 taattttaattggttaatcgaaaaacaattatagtgattcttattttaaattgaatcatatatgtctccattgaattttcacaacacaatctcacttttt 9136832  T
Q  126 tacccttcatcatttctaggatacgtatttgtgaaatatcttataagtatc 176  Q
    ||||||||||  |||| ||||||||| | |||||| ||| |||||||||||    
T  9136833 tacccttcattttttccaggatacgtctctgtgaagtatgttataagtatc 9136883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 11755785 - 11755899
Alignment:
Q  138 tttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa--gattaaaatttaaaat 235  Q
    ||||||||||| |||| |||||| |||||||||||||||| || | ||||||| ||||||  |||| ||||| ||||||| |    |||||| |||||||    
T  11755785 tttctaggatatgtatatgtgaagtatcttataagtatcc-tggtctatctgtagaatatcttataagtatccgataaaatattttttaaaaattaaaat 11755883  T
Q  236 aattaattatgatact 251  Q
    | |||||||| |||||    
T  11755884 atttaattataatact 11755899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 18320730 - 18320690
Alignment:
Q  138 tttctaggatacgtatttgtgaaatatcttataagtatcct 178  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  18320730 tttctaggatacgtatatgtgaagtatcttataagtatcct 18320690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 135
Target Start/End: Complemental strand, 37231859 - 37231784
Alignment:
Q  60 tgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcat 135  Q
    |||||||||||| ||||||| |||||||||| || | | |||||| ||||||   ||||||||| |||||||||||    
T  37231859 tgattcatatcttaaattgaatcgtatacatctccattgaattttcacaacacaatctcacttttttacccttcat 37231784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 11755705 - 11755763
Alignment:
Q  21 aagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattga 79  Q
    |||| ||||||||||  ||||||| |||||||||| |||| || |||||||||||||||    
T  11755705 aagtataattttaagcggttcatcaagaaacaattctactaatgcatatctaaaattga 11755763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 39 - 243
Target Start/End: Complemental strand, 8008 - 7802
Alignment:
Q  39 ttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgtctcactttcttacccttcatc-a 137  Q
    ||||||||||||||||| || |||| ||||||||||||||| || ||||||| | || | ||||||||||||||||||||||||| |||| |||||||      
T  8008 ttcatcgagaaacaattctattgatgcatatctaaaattgagtcatatacatctataatgaatttttacaacattgtctcacttttttactcttcatctt 7909  T
Q  138 tttctaggatacgtatttgtgaaatatcttataagtatccttgttgtatctgtggaatattctatacgtatcagataaaaaa--gattaaaatttaaaat 235  Q
    |||||||||||||| | |||||| ||||||| ||||||||||| |||||||||||| |||   ||| ||||  ||||||| |   ||||||| |||||||    
T  7908 tttctaggatacgtgtctgtgaagtatcttagaagtatccttg-tgtatctgtggagtatcacataagtattcgataaaatatttattaaaaattaaaat 7810  T
Q  236 aattaatt 243  Q
    ||||||||    
T  7809 aattaatt 7802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 6288 - 6137
Alignment:
Q  16 acaataagtgtaattttaagtagttcatcgagaaacaattttactgattcatatctaaaattgattcgtatacatttctactaaatttttacaacattgt 115  Q
    |||| |||| ||||||||||| ||||||| | |||||||| || | || |||||||| |||||| || ||||||| ||||   ||| ||| |||||||||    
T  6288 acaagaagtataattttaagtggttcatcaaaaaacaattctagttatgcatatctataattgaatcatatacatctctatcgaatgtttgcaacattgt 6189  T
Q  116 ctcactttcttacccttcatc-atttctaggatacgtatttgtgaaatatct 166  Q
    |||||||| |||| |||||||  |||  ||||||||||| ||||||||||||    
T  6188 ctcacttttttactcttcatctttttgaaggatacgtatatgtgaaatatct 6137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0581 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 10106 - 10046
Alignment:
Q  106 acaacattgtctcactttcttacccttcatcatttctaggatacgtatttgtgaaatatct 166  Q
    |||||||||||||||||| |||||||| ||  ||||||||||||| || |||||| |||||    
T  10106 acaacattgtctcacttttttaccctttatattttctaggatacgcatctgtgaagtatct 10046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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