View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3571_low_13 (Length: 247)
Name: NF3571_low_13
Description: NF3571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3571_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 22801386 - 22801160
Alignment:
| Q |
1 |
taccacaacatgttcatgccttccaaaatttaaaaactccaggagcaatacatatcaaaattaggtatttggacaaatcaaaagtaacattttccatctc |
100 |
Q |
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| T |
22801386 |
taccacaacatgttcatgccttccaaaatttaaaaactccaggagcaatacatatcaaaattaggtatttagacaaatcaaaagtaacattttccatctc |
22801287 |
T |
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| Q |
101 |
attgttcattccaaacagctatatgaccctttggcatttcatcaaacagctggaggacggttagcggcgttggaaacaaatacatttctgaatattggat |
200 |
Q |
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| T |
22801286 |
attgttcattccaaacagctatatgaccctttggcatttcatcaaacagctggaggacggttagcggcattggaaacaaatacatttctgaatattggat |
22801187 |
T |
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| Q |
201 |
tgatgtgatacacttgggtggtaagtaa |
228 |
Q |
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| T |
22801186 |
tgatgtgataca-tttggtggtaagtaa |
22801160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 39 - 177
Target Start/End: Complemental strand, 22868003 - 22867845
Alignment:
| Q |
39 |
ccaggagcaatacatatcaaaattaggtatttggacaaatcaaaagtaacattttccatctcattgtt--------------------cattccaaacag |
118 |
Q |
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| T |
22868003 |
ccaggagcaatacatatgaaaattaggcatttagacaaatcaaaagtaacattttccatctcattaataatgtaccagctactgataacattccaaacag |
22867904 |
T |
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| Q |
119 |
ctatatgaccctttggcatttcatcaaacagctggaggacggttagcggcgttggaaac |
177 |
Q |
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| T |
22867903 |
ctatatgacactttggcatttcatcgaacagctggaggacggttagcgacattggaaac |
22867845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22868253 - 22868217
Alignment:
| Q |
1 |
taccacaacatgttcatgccttccaaaatttaaaaac |
37 |
Q |
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| T |
22868253 |
taccacaacatgatcatgccttccaaaatttaaaaac |
22868217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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