View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3571_low_14 (Length: 239)

Name: NF3571_low_14
Description: NF3571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3571_low_14
NF3571_low_14
[»] chr5 (3 HSPs)
chr5 (36-151)||(6007573-6007688)
chr5 (50-161)||(33001936-33002047)
chr5 (94-165)||(15183088-15183160)
[»] chr4 (5 HSPs)
chr4 (36-151)||(33463691-33463806)
chr4 (32-151)||(51412608-51412729)
chr4 (50-147)||(48569424-48569521)
chr4 (113-166)||(47376851-47376904)
chr4 (129-165)||(47377610-47377646)
[»] chr2 (8 HSPs)
chr2 (50-165)||(30544727-30544842)
chr2 (50-165)||(44154915-44155030)
chr2 (50-151)||(8145558-8145659)
chr2 (95-165)||(30545413-30545483)
chr2 (124-165)||(44154276-44154317)
chr2 (167-215)||(1417935-1417983)
chr2 (181-213)||(36445475-36445507)
chr2 (94-174)||(37547989-37548069)
[»] chr3 (4 HSPs)
chr3 (36-148)||(54901334-54901446)
chr3 (32-147)||(33862107-33862221)
chr3 (74-120)||(42147505-42147551)
chr3 (74-120)||(51491754-51491800)
[»] chr1 (6 HSPs)
chr1 (39-151)||(49420877-49420989)
chr1 (32-151)||(42645955-42646072)
chr1 (167-221)||(38679044-38679098)
chr1 (74-120)||(15374654-15374700)
chr1 (94-168)||(23440614-23440688)
chr1 (178-215)||(17371644-17371681)
[»] chr6 (3 HSPs)
chr6 (32-151)||(1770699-1770818)
chr6 (116-168)||(33077569-33077621)
chr6 (113-165)||(24126714-24126766)
[»] chr8 (4 HSPs)
chr8 (32-151)||(35839736-35839854)
chr8 (32-151)||(33688237-33688353)
chr8 (93-167)||(43924994-43925068)
chr8 (129-167)||(43924488-43924526)
[»] chr7 (7 HSPs)
chr7 (32-151)||(9009-9129)
chr7 (39-151)||(47800101-47800213)
chr7 (74-121)||(46251434-46251481)
chr7 (117-167)||(41195366-41195416)
chr7 (184-218)||(43782988-43783022)
chr7 (94-167)||(7677415-7677488)
chr7 (50-163)||(7677742-7677855)
[»] scaffold0041 (1 HSPs)
scaffold0041 (50-168)||(27218-27336)
[»] scaffold0181 (1 HSPs)
scaffold0181 (68-119)||(15124-15175)
[»] scaffold0016 (1 HSPs)
scaffold0016 (74-120)||(67292-67338)


Alignment Details
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 6007573 - 6007688
Alignment:
Q  36 ggaaagataatgtgaaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaactttttcatcatgggaaa 135  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  6007573 ggaaagatagtgtgaaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaactttcccatcatgggaaa 6007672  T
Q  136 caagttccctttccca 151  Q
    ||| ||||||||||||    
T  6007673 caaattccctttccca 6007688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 161
Target Start/End: Complemental strand, 33002047 - 33001936
Alignment:
Q  50 aaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaactttttcatcatgggaaacaagttccctttcc 149  Q
    ||||||||| ||||||| ||||| ||||||| | |||  || | |||||||| ||||| ||  |||||||||| |||  ||||||| || |  |||||||    
T  33002047 aaaataatttagtgttgagagaatatgataagaatgtattcctcatttaatctaatggacatgatcaacttttccatggtgggaaagaactctcctttcc 33001948  T
Q  150 caaattaaatgg 161  Q
    ||||||||||||    
T  33001947 caaattaaatgg 33001936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 15183160 - 15183088
Alignment:
Q  94 atttaatcaaatggccaaaatcaactttttcatcatgggaaacaagttc-cctttcccaaattaaatggcacc 165  Q
    |||||||| ||||| ||  ||||||||| |||| |||||||| ||  || |||||||||||||||||||||||    
T  15183160 atttaatctaatggacatgatcaactttctcatgatgggaaataaactctcctttcccaaattaaatggcacc 15183088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 33463806 - 33463691
Alignment:
Q  36 ggaaagataatgtgaaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaactttttcatcatgggaaa 135  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||| |||    
T  33463806 ggaaagatagtgtgaaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaattttcccatcatggaaaa 33463707  T
Q  136 caagttccctttccca 151  Q
    ||| ||||||||||||    
T  33463706 caaattccctttccca 33463691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 51412729 - 51412608
Alignment:
Q  32 gttgggaaagataatgtgaaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaacttt--ttcatcat 129  Q
    |||||| |||||| |||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||    | ||||    
T  51412729 gttggggaagatagtgtgaaaaaaattcagtgttgagagaacatgataagagtgtgctccttatttaatcaaatggctaaaatcaactttcccccctcat 51412630  T
Q  130 gggaaacaagttccctttccca 151  Q
    || |||||| ||||||||||||    
T  51412629 ggaaaacaacttccctttccca 51412608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 48569521 - 48569424
Alignment:
Q  50 aaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaactttttcatcatgggaaacaagttcccttt 147  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| ||  ||||||||||||  ||||||||||||||| ||||||||    
T  48569521 aaaataatttagtgttgtgagaacatgataacagtgtactctttatttaatcaaacggttaaaatcaactttcccatcatgggaaacaacttcccttt 48569424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 47376904 - 47376851
Alignment:
Q  113 atcaactttttcatcatgggaaacaagttccctttcccaaattaaatggcaccg 166  Q
    |||||||||  ||| ||||||||||| | ||||||||||||||||||| |||||    
T  47376904 atcaactttcccatgatgggaaacaactcccctttcccaaattaaatgccaccg 47376851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 47377610 - 47377646
Alignment:
Q  129 tgggaaacaagttccctttcccaaattaaatggcacc 165  Q
    |||||||||| | ||||||||||||||||||||||||    
T  47377610 tgggaaacaactcccctttcccaaattaaatggcacc 47377646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 30544842 - 30544727
Alignment:
Q  50 aaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaactttttcatcatgggaaacaagttccctttcc 149  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||| |||| |||||    
T  30544842 aaaataattcagtgttgtgagaacatgataatagtgtactctttatttaatcaaatggctaaaatcaactttcccatcatgggaaacaacttccatttcc 30544743  T
Q  150 caaattaaatggcacc 165  Q
    ||||||||||||||||    
T  30544742 caaattaaatggcacc 30544727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 50 - 165
Target Start/End: Original strand, 44154915 - 44155030
Alignment:
Q  50 aaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaactttttcatcatgggaaacaagttccctttcc 149  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||    
T  44154915 aaaataattcggtgttgtgagaacatgataatagtgtactctttatttaatcaaatggctaaaatcaacttttccatcatgggaaacaacttccctttcc 44155014  T
Q  150 caaattaaatggcacc 165  Q
    |||||||||| |||||    
T  44155015 caaattaaatagcacc 44155030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 8145659 - 8145558
Alignment:
Q  50 aaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaactttttcatcatgggaaacaagttccctttcc 149  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||   ||||| |||||||| ||||||| ||    
T  8145659 aaaataattcagtgttatgagaacatgataatagtgtactctttatttaatcaaatggctaaaatcaactttcctatcataggaaacaacttcccttccc 8145560  T
Q  150 ca 151  Q
    ||    
T  8145559 ca 8145558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 30545413 - 30545483
Alignment:
Q  95 tttaatcaaatggccaaaatcaactttttcatcatgggaaacaagttccctttcccaaattaaatggcacc 165  Q
    ||||||| |||||  ||||  ||||||  ||||||||||||||| ||||||||||||||||||||||||||    
T  30545413 tttaatctaatggttaaaaaaaactttcccatcatgggaaacaacttccctttcccaaattaaatggcacc 30545483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 44154317 - 44154276
Alignment:
Q  124 catcatgggaaacaagttccctttcccaaattaaatggcacc 165  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  44154317 catcatgggaaacaacttccctttcccaaattaaatggcacc 44154276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 1417983 - 1417935
Alignment:
Q  167 tatttataaagtagctttacattccaacttcgaggtaaagtttattagg 215  Q
    ||||||| || || |||||||||||||||||||||| |||||| |||||    
T  1417983 tatttatcaattatctttacattccaacttcgaggtgaagtttgttagg 1417935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 36445507 - 36445475
Alignment:
Q  181 ctttacattccaacttcgaggtaaagtttatta 213  Q
    |||||||||||||||||||||| ||||||||||    
T  36445507 ctttacattccaacttcgaggtgaagtttatta 36445475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 37548069 - 37547989
Alignment:
Q  94 atttaatcaaatggccaaaatcaactttttcatcatgggaaacaagttccctttcccaaattaaatggcaccgtatttata 174  Q
    |||||||| ||||| ||  |||||||||  ||| |||||||| || |  ||||||||||||||||||||||| ||| ||||    
T  37548069 atttaatctaatggacatgatcaactttcccatgatgggaaagaactctcctttcccaaattaaatggcaccttatatata 37547989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 54901334 - 54901446
Alignment:
Q  36 ggaaagataatgtgaaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaactttttcatcatgggaaa 135  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||| |||    
T  54901334 ggaaagatagtgtgaaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaagtttcccatcatggaaaa 54901433  T
Q  136 caagttccctttc 148  Q
    ||| |||||||||    
T  54901434 caaattccctttc 54901446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 33862107 - 33862221
Alignment:
Q  32 gttgggaaagataatgtgaaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaactttttcatcatgg 131  Q
    |||||| |||||||||| |||| |||| ||||| | ||||||||||||| |||||| |||||||||||||||| ||| || |||||||||| |||||| |    
T  33862107 gttggggaagataatgttaaaa-aattaagtgtagagagaacatgataagagtgtgttctttatttaatcaaagggctaagatcaacttttccatcatag 33862205  T
Q  132 gaaacaagttcccttt 147  Q
    ||||| | ||||||||    
T  33862206 gaaactacttcccttt 33862221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 42147505 - 42147551
Alignment:
Q  74 atgataatagtgtgctctttatttaatcaaatggccaaaatcaactt 120  Q
    ||||||| |||||| ||||||||||||| |||||| |||||||||||    
T  42147505 atgataaaagtgtgttctttatttaatccaatggctaaaatcaactt 42147551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 51491800 - 51491754
Alignment:
Q  74 atgataatagtgtgctctttatttaatcaaatggccaaaatcaactt 120  Q
    ||||||| |||||| ||||||||||||| |||||| |||||||||||    
T  51491800 atgataaaagtgtgttctttatttaatccaatggctaaaatcaactt 51491754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 49420877 - 49420989
Alignment:
Q  39 aagataatgtgaaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaactttttcatcatgggaaacaa 138  Q
    |||||| |||||||| |||||||||| | ||||||||||||| || |||||| ||||||||||||||||| ||||||||||||| |||||||||||||||    
T  49420877 aagatagtgtgaaaaaaattcagtgtggagagaacatgataagagggtgctccttatttaatcaaatggctaaaatcaacttttccatcatgggaaacaa 49420976  T
Q  139 gttccctttccca 151  Q
     ||||||||||||    
T  49420977 cttccctttccca 49420989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 32 - 151
Target Start/End: Original strand, 42645955 - 42646072
Alignment:
Q  32 gttgggaaagataatgtgaaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaactttttcatcatgg 131  Q
    |||||| |||||| ||||||||  ||||||||||| ||||||||||||| ||||| ||||||||||||||||||||| || |||||||||  ||| ||||    
T  42645955 gttggggaagatagtgtgaaaa--attcagtgttgagagaacatgataagagtgtactctttatttaatcaaatggctaagatcaactttcccattatgg 42646052  T
Q  132 gaaacaagttccctttccca 151  Q
     |||| | ||||||||||||    
T  42646053 aaaactacttccctttccca 42646072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 38679098 - 38679044
Alignment:
Q  167 tatttataaagtagctttacattccaacttcgaggtaaagtttattaggcgaaaa 221  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||    
T  38679098 tatttataaggtagctttacattccaacttcaaggtgaagtttattaggcgaaaa 38679044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 15374654 - 15374700
Alignment:
Q  74 atgataatagtgtgctctttatttaatcaaatggccaaaatcaactt 120  Q
    ||||||| |||||| ||||||||||||| |||||| |||||||||||    
T  15374654 atgataaaagtgtgttctttatttaatccaatggctaaaatcaactt 15374700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 23440688 - 23440614
Alignment:
Q  94 atttaatcaaatggccaaaatcaactttttcatcatgggaaacaagttccctttcccaaattaaatggcaccgta 168  Q
    |||||||| ||||| || ||||||||||| |||  | ||||| || |  ||||||||||||||||||||||||||    
T  23440688 atttaatctaatggacataatcaacttttccatagttggaaagaactctcctttcccaaattaaatggcaccgta 23440614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 17371644 - 17371681
Alignment:
Q  178 tagctttacattccaacttcgaggtaaagtttattagg 215  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  17371644 tagctttacattccaacttcaaggtgaagtttattagg 17371681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 151
Target Start/End: Original strand, 1770699 - 1770818
Alignment:
Q  32 gttgggaaagataatgtgaaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaactttttcatcatgg 131  Q
    |||||| ||||||||||||||| |||||| ||| | ||||||||||||| ||||||||||||||||||||||||||| || |||||||||  ||||||||    
T  1770699 gttggggaagataatgtgaaaaaaattcaatgtagggagaacatgataagagtgtgctctttatttaatcaaatggctaagatcaactttcccatcatgg 1770798  T
Q  132 gaaacaagttccctttccca 151  Q
    | ||| | ||||||||||||    
T  1770799 ggaactacttccctttccca 1770818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 33077621 - 33077569
Alignment:
Q  116 aactttttcatcatgggaaacaagttccctttcccaaattaaatggcaccgta 168  Q
    ||||||| ||||| |||||| || ||||||||||||||||||| |||||||||    
T  33077621 aacttttccatcaagggaaagaacttccctttcccaaattaaacggcaccgta 33077569  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 24126714 - 24126766
Alignment:
Q  113 atcaactttttcatcatgggaaacaagttccctttcccaaattaaatggcacc 165  Q
    |||||||||  ||| ||||||||||| | ||||||||||||||||||| ||||    
T  24126714 atcaactttcccatgatgggaaacaactcccctttcccaaattaaatgccacc 24126766  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 35839854 - 35839736
Alignment:
Q  32 gttgggaaagataatgtgaaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaactttttcatcatgg 131  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||| ||||||||| ||| ||||||  || | |||||  |||||| |||||||||    
T  35839854 gttgggaaagatagtgtgaaaa-aattcagtgttgagagaacatgataagagtgtgctccttacttaatctgatagtcaaaaaaaactttctcatcatgg 35839756  T
Q  132 gaaacaagttccctttccca 151  Q
    ||||||| ||||||||||||    
T  35839755 gaaacaacttccctttccca 35839736  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 33688353 - 33688237
Alignment:
Q  32 gttgggaaagataatgtgaaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaactttttcatcatgg 131  Q
    |||||| |||||| ||||||||  ||||||||||| |||||||| |||| ||||| ||||||||||||||||||||| || |||||||||  ||| ||||    
T  33688353 gttggggaagatagtgtgaaaa--attcagtgttgagagaacataataagagtgtactctttatttaatcaaatggctaagatcaactttcccat-atgg 33688257  T
Q  132 gaaacaagttccctttccca 151  Q
    ||||| | ||||||||||||    
T  33688256 gaaactacttccctttccca 33688237  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 167
Target Start/End: Original strand, 43924994 - 43925068
Alignment:
Q  93 tatttaatcaaatggccaaaatcaactttttcatcatgggaaacaagttccctttcccaaattaaatggcaccgt 167  Q
    ||||||||| || || |||||| |||||| ||||  |||||||||| ||||||||||||||||||| | ||||||    
T  43924994 tatttaatctaacggtcaaaattaactttctcatggtgggaaacaacttccctttcccaaattaaacgccaccgt 43925068  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 167
Target Start/End: Complemental strand, 43924526 - 43924488
Alignment:
Q  129 tgggaaacaagttccctttcccaaattaaatggcaccgt 167  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  43924526 tgggaaacaacttccctttcccaaattaaatgccaccgt 43924488  T

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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 32 - 151
Target Start/End: Original strand, 9009 - 9129
Alignment:
Q  32 gttgggaaagataatgtgaaaataa-ttcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaactttttcatcatg 130  Q
    |||||| ||||||||||||||| || |||| ||| | ||||||||||||| ||||||||||||||||||||||||||| || |||||||||  |||||||    
T  9009 gttggggaagataatgtgaaaaaaaattcaatgtagggagaacatgataagagtgtgctctttatttaatcaaatggctaagatcaactttcccatcatg 9108  T
Q  131 ggaaacaagttccctttccca 151  Q
      |||| | ||||||||||||    
T  9109 aaaaactacttccctttccca 9129  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 39 - 151
Target Start/End: Original strand, 47800101 - 47800213
Alignment:
Q  39 aagataatgtgaaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaactttttcatcatgggaaacaa 138  Q
    ||||||||||||||| |||||| ||| | ||||||||||||| ||||||||||||||||||||||||| | |  |||||||||  ||||||||| ||| |    
T  47800101 aagataatgtgaaaaaaattcaatgtagggagaacatgataagagtgtgctctttatttaatcaaatgactatgatcaactttcccatcatggggaacta 47800200  T
Q  139 gttccctttccca 151  Q
     ||||||||||||    
T  47800201 cttccctttccca 47800213  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 46251481 - 46251434
Alignment:
Q  74 atgataatagtgtgctctttatttaatcaaatggccaaaatcaacttt 121  Q
    ||||||||| ||||||||||| |||||| |||||| ||||||||||||    
T  46251481 atgataatattgtgctctttaattaatctaatggctaaaatcaacttt 46251434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 41195366 - 41195416
Alignment:
Q  117 actttttcatcatgggaaacaagttccctttcccaaattaaatggcaccgt 167  Q
    |||||| ||| |||||||| |||||  ||||||||||||||||||||||||    
T  41195366 acttttccatgatgggaaagaagtttgctttcccaaattaaatggcaccgt 41195416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 43783022 - 43782988
Alignment:
Q  184 tacattccaacttcgaggtaaagtttattaggcga 218  Q
    ||||||||||||||||||||||||||||| |||||    
T  43783022 tacattccaacttcgaggtaaagtttattcggcga 43782988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 167
Target Start/End: Complemental strand, 7677488 - 7677415
Alignment:
Q  94 atttaatcaaatggccaaaatcaactttttcatcatgggaaacaagttccctttcccaaattaaatggcaccgt 167  Q
    |||||||| ||||| ||  ||||||||||||||  ||||||| || |  ||||||||||||||||||| |||||    
T  7677488 atttaatctaatggacatgatcaactttttcatggtgggaaagaattctcctttcccaaattaaatggtaccgt 7677415  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 7677742 - 7677855
Alignment:
Q  50 aaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaactttttcatcatgggaaacaagttccctttcc 149  Q
    ||||||||| ||||||| ||||| ||||||| | |||| || | |||||||| ||||  ||  |||||||||  |||  ||||||| || |  |||||||    
T  7677742 aaaataatttagtgttgagagaatatgataagaatgtgttcctcatttaatctaatgaacatgatcaactttcccatggtgggaaagaactctcctttcc 7677841  T
Q  150 caaattaaatggca 163  Q
    ||||||||||||||    
T  7677842 caaattaaatggca 7677855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 168
Target Start/End: Complemental strand, 27336 - 27218
Alignment:
Q  50 aaaataattcagtgttgtgagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaactttttcatcatgggaaacaagttccctttcc 149  Q
    ||||||||| ||||||| ||||  ||||||| | |||| || | |||||||| ||||| ||  |||||||||  ||| |||||||| || |  |||||||    
T  27336 aaaataatttagtgttgagagagtatgataagaatgtgttcctcatttaatctaatggacatgatcaactttcccatgatgggaaagaactctcctttcc 27237  T
Q  150 caaattaaatggcaccgta 168  Q
    |||||||||||||||||||    
T  27236 caaattaaatggcaccgta 27218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 15175 - 15124
Alignment:
Q  68 gagaacatgataatagtgtgctctttatttaatcaaatggccaaaatcaact 119  Q
    |||| |||||||| | ||||||| ||||||||||||||||| ||||||||||    
T  15175 gagagcatgataagattgtgctcattatttaatcaaatggctaaaatcaact 15124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 67338 - 67292
Alignment:
Q  74 atgataatagtgtgctctttatttaatcaaatggccaaaatcaactt 120  Q
    ||||||| |||||| ||||||||||||| |||||| |||||||||||    
T  67338 atgataaaagtgtgttctttatttaatccaatggctaaaatcaactt 67292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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