View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3571_low_2 (Length: 550)

Name: NF3571_low_2
Description: NF3571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3571_low_2
NF3571_low_2
[»] chr1 (27 HSPs)
chr1 (331-537)||(52059753-52059961)
chr1 (107-335)||(52060002-52060226)
chr1 (20-99)||(52060280-52060365)
chr1 (387-509)||(33527201-33527323)
chr1 (387-446)||(30371105-30371164)
chr1 (387-457)||(49517016-49517086)
chr1 (387-447)||(25006088-25006148)
chr1 (387-434)||(7218128-7218175)
chr1 (387-490)||(36070163-36070266)
chr1 (387-457)||(17269196-17269266)
chr1 (387-457)||(40304108-40304178)
chr1 (393-457)||(15579429-15579492)
chr1 (387-443)||(27738234-27738290)
chr1 (462-509)||(4576667-4576714)
chr1 (387-446)||(28467361-28467420)
chr1 (398-445)||(47877080-47877127)
chr1 (413-487)||(2831656-2831730)
chr1 (394-452)||(15360845-15360903)
chr1 (416-510)||(34404929-34405023)
chr1 (387-457)||(49557087-49557157)
chr1 (462-507)||(11218090-11218135)
chr1 (467-508)||(31517887-31517928)
chr1 (387-484)||(31623942-31624039)
chr1 (462-507)||(48064189-48064234)
chr1 (387-431)||(15515513-15515557)
chr1 (387-447)||(34179926-34179986)
chr1 (399-447)||(44032065-44032113)
[»] chr7 (16 HSPs)
chr7 (387-490)||(12110273-12110376)
chr7 (389-457)||(45813236-45813304)
chr7 (387-446)||(1417221-1417280)
chr7 (387-490)||(30535476-30535579)
chr7 (387-457)||(5006563-5006633)
chr7 (387-453)||(30496654-30496720)
chr7 (387-447)||(9527144-9527204)
chr7 (387-455)||(30456504-30456572)
chr7 (449-509)||(31002934-31002994)
chr7 (462-509)||(425966-426013)
chr7 (410-457)||(35536053-35536100)
chr7 (428-510)||(41668205-41668287)
chr7 (428-510)||(41668883-41668965)
chr7 (389-434)||(28340452-28340497)
chr7 (385-457)||(46081979-46082052)
chr7 (390-446)||(45777228-45777284)
[»] chr4 (23 HSPs)
chr4 (420-487)||(53422278-53422345)
chr4 (387-507)||(20936283-20936404)
chr4 (387-434)||(6927547-6927594)
chr4 (390-481)||(42321936-42322027)
chr4 (387-457)||(24160549-24160619)
chr4 (387-457)||(49219085-49219155)
chr4 (393-453)||(4071832-4071892)
chr4 (392-440)||(13949903-13949951)
chr4 (387-447)||(25885815-25885875)
chr4 (387-457)||(3175897-3175967)
chr4 (387-453)||(24929443-24929509)
chr4 (387-457)||(29373941-29374011)
chr4 (387-457)||(35958601-35958671)
chr4 (387-453)||(45128364-45128430)
chr4 (391-457)||(50745946-50746012)
chr4 (389-446)||(10192241-10192298)
chr4 (395-444)||(11917518-11917567)
chr4 (387-487)||(6466100-6466200)
chr4 (389-445)||(18630638-18630694)
chr4 (398-457)||(21952907-21952966)
chr4 (387-427)||(30207625-30207665)
chr4 (401-457)||(44007940-44007996)
chr4 (385-457)||(52645802-52645873)
[»] scaffold0024 (1 HSPs)
scaffold0024 (387-457)||(27522-27592)
[»] chr8 (12 HSPs)
chr8 (387-457)||(42597347-42597417)
chr8 (387-487)||(926403-926504)
chr8 (420-507)||(34522143-34522230)
chr8 (387-434)||(34770861-34770908)
chr8 (387-433)||(9834843-9834889)
chr8 (387-457)||(29973027-29973097)
chr8 (387-457)||(30627956-30628026)
chr8 (387-424)||(7645957-7645994)
chr8 (387-511)||(16163332-16163456)
chr8 (387-457)||(9699947-9700017)
chr8 (390-458)||(39561598-39561666)
chr8 (389-457)||(13561368-13561436)
[»] chr3 (18 HSPs)
chr3 (392-457)||(2865718-2865782)
chr3 (387-455)||(237345-237413)
chr3 (391-440)||(2318607-2318656)
chr3 (387-452)||(22214735-22214800)
chr3 (413-485)||(2128331-2128403)
chr3 (387-511)||(44014172-44014296)
chr3 (436-490)||(36587889-36587944)
chr3 (387-457)||(10101530-10101600)
chr3 (387-457)||(10212455-10212525)
chr3 (387-487)||(44295448-44295545)
chr3 (388-434)||(48397615-48397661)
chr3 (387-428)||(2923453-2923494)
chr3 (388-457)||(32555036-32555105)
chr3 (387-456)||(36783388-36783457)
chr3 (388-445)||(48364934-48364991)
chr3 (390-434)||(3467445-3467489)
chr3 (387-419)||(22214713-22214745)
chr3 (393-457)||(32703084-32703148)
[»] chr2 (17 HSPs)
chr2 (398-509)||(28039397-28039508)
chr2 (387-433)||(35755556-35755602)
chr2 (389-490)||(42907269-42907373)
chr2 (387-443)||(11513858-11513914)
chr2 (387-434)||(33942119-33942166)
chr2 (387-457)||(656831-656901)
chr2 (413-485)||(43259752-43259824)
chr2 (387-506)||(4090246-4090365)
chr2 (387-457)||(23143032-23143102)
chr2 (387-457)||(23554822-23554892)
chr2 (387-457)||(28933770-28933840)
chr2 (388-434)||(33944574-33944620)
chr2 (400-457)||(28902023-28902080)
chr2 (387-444)||(40145421-40145478)
chr2 (388-445)||(43529906-43529963)
chr2 (413-457)||(787277-787321)
chr2 (389-457)||(11344340-11344408)
[»] chr6 (13 HSPs)
chr6 (387-480)||(4006637-4006730)
chr6 (387-457)||(10452414-10452484)
chr6 (387-457)||(29274283-29274353)
chr6 (413-487)||(33080662-33080736)
chr6 (410-457)||(24782005-24782052)
chr6 (387-457)||(1402942-1403012)
chr6 (387-457)||(2027460-2027530)
chr6 (387-457)||(9093610-9093680)
chr6 (387-457)||(33067105-33067174)
chr6 (396-457)||(24836262-24836323)
chr6 (387-447)||(2727910-2727970)
chr6 (387-435)||(5623124-5623172)
chr6 (413-457)||(34405051-34405095)
[»] chr5 (10 HSPs)
chr5 (387-453)||(10303751-10303815)
chr5 (387-507)||(18857454-18857574)
chr5 (387-434)||(12975316-12975363)
chr5 (391-430)||(15905563-15905602)
chr5 (408-457)||(10363696-10363745)
chr5 (387-452)||(37526253-37526318)
chr5 (387-452)||(37588414-37588479)
chr5 (387-452)||(37690691-37690756)
chr5 (389-434)||(40120089-40120134)
chr5 (389-433)||(41016149-41016193)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 331 - 537
Target Start/End: Complemental strand, 52059961 - 52059753
Alignment:
Q  331 ttatctactgacgtaagcatttctgacacttttgtagaga--catattaacttatttctatgaaaacaacttataggttacatgaaaacaatttgatttt 428  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52059961 ttatctactgacgtaagcatttctgacacttttgtagagagacatattaacttatttctaagaaaacaacttataggttacatgaaaacaatttgatttt 52059862  T
Q  429 attttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaaattatgtaatttatccaaacaggagttacatccctcttcatt 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  52059861 attttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagcttcaaattatgtaatttatccaaacatgagttacatccctcttcatt 52059762  T
Q  529 cacaggttc 537  Q
    |||||||||    
T  52059761 cacaggttc 52059753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 107 - 335
Target Start/End: Complemental strand, 52060226 - 52060002
Alignment:
Q  107 tatttccggttattatattcagctgcatatcatgtaatttttgtttaatcttctctgtagtaataataatatttaagttacttatgatttacatttggtt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||    
T  52060226 tatttccggttattatattcagctgcatatcatgtaatttttgtttaatcttctctgtattaataataatatttaagttacttatgatttacatttcttt 52060127  T
Q  207 ccaactttgattcaattttggcgtgcttctgccaaacttgtataactaattgcataacataacttatttcttattttattttttgctctgttattataac 306  Q
     ||| ||||  | | ||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||     
T  52060126 tcaattttggctgattta---cgtgcttctgccaaacttgtataactaattgcataacataacttatttcttattttat-ttttggtctgttattataat 52060031  T
Q  307 tcacagaccctaattaccaaaatgttatc 335  Q
    |||||||||||||||||||||||||||||    
T  52060030 tcacagaccctaattaccaaaatgttatc 52060002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 52060365 - 52060280
Alignment:
Q  20 ccctgatcttcaaaatgatcaaaccaccaat------gatagtcatagtactcctcaatcttcataactcactcaaaccaaccttg 99  Q
    |||||||||| |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52060365 ccctgatcttgaaaatgatcaaaccaccaaccaatgagatagtcatagtactcctcaatcttcataactcactcaaaccaaccttg 52060280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 387 - 509
Target Start/End: Original strand, 33527201 - 33527323
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 486  Q
    |||||||||| ||||||| ||| ||||||||| ||||| | ||||||| ||| |||| ||| ||||||||| || |||| ||||||||| ||||||||||    
T  33527201 tatgaaaacagcttatagattatatgaaaacagtttgactgtattttatcttttgttttagaaatagcttattcataagcgcttatgctctaagctgcaa 33527300  T
Q  487 attatgtaatttatccaaacagg 509  Q
    | || |   ||||||||||||||    
T  33527301 aataagctgtttatccaaacagg 33527323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 446
Target Start/End: Complemental strand, 30371164 - 30371105
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttata 446  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||||||| ||| |||||||    
T  30371164 tatgaaaacaacttatagcttatatgaaaacaatttgagtttattttatcttttgttata 30371105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 49517086 - 49517016
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||| ||||||| ||| ||||||||||||||| ||||||||| ||| |||||||| |||| ||||    
T  49517086 tatgaaaacagcttatagcttaaatgaaaacaatttgactttattttatcttttgttatagaaataactta 49517016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 447
Target Start/End: Original strand, 25006088 - 25006148
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatag 447  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||||||| | | ||||||||    
T  25006088 tatgaaaacaacttatagcttatatgaaaacaatttgactttattttaccgtctgttatag 25006148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 434
Target Start/End: Original strand, 7218128 - 7218175
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttatttta 434  Q
    |||||||||||||||||| ||| ||||||||||||||| |||||||||    
T  7218128 tatgaaaacaacttatagcttatatgaaaacaatttgactttatttta 7218175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 490
Target Start/End: Complemental strand, 36070266 - 36070163
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 486  Q
    |||||||||||||||||| |||   ||| ||||||| | ||||||||| ||| |||||||  ||||||  |  | |||| ||||||||||||||||||||    
T  36070266 tatgaaaacaacttatagcttatccgaagacaatttaactttattttatcttttgttataaaaatagcccatacataagcgcttatgctataagctgcaa 36070167  T
Q  487 atta 490  Q
    ||||    
T  36070166 atta 36070163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 17269266 - 17269196
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||||||||| | ||| ||||||||||||||| |||||||| |||| |||| ||| |||| ||||    
T  17269266 tatgaaaacaacttattgcttatatgaaaacaatttgactttattttcacttttgttctagaaataactta 17269196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 457
Target Start/End: Original strand, 40304108 - 40304178
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||| ||||||  ||| ||||||||||| ||||||||||||| ||| |||||||  |||||||||    
T  40304108 tatgaaaacagcttataacttatatgaaaacaatgtgattttattttatcttttgttatataaatagctta 40304178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 457
Target Start/End: Complemental strand, 15579492 - 15579429
Alignment:
Q  393 aacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||| ||||||| ||||||||||||||||||| ||||||| |||||  ||||||| |||||||||    
T  15579492 aacagcttatagcttacatgaaaacaatttga-tttatttgaactttagttatagaaatagctta 15579429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 443
Target Start/End: Original strand, 27738234 - 27738290
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgtt 443  Q
    ||||||||||| |||||| ||| ||||||||||||||| ||||||||| ||| ||||    
T  27738234 tatgaaaacaaattatagcttatatgaaaacaatttgactttattttatcttttgtt 27738290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 509
Target Start/End: Complemental strand, 4576714 - 4576667
Alignment:
Q  462 taagagcttatgctataagctgcaaattatgtaatttatccaaacagg 509  Q
    |||| ||||||||||||||||  ||||||||| |||||||||||||||    
T  4576714 taagcgcttatgctataagctataaattatgttatttatccaaacagg 4576667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 446
Target Start/End: Original strand, 28467361 - 28467420
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttata 446  Q
    |||||||||||||| ||| ||| ||||||| ||||||| ||||||||| ||| |||||||    
T  28467361 tatgaaaacaacttgtagcttatatgaaaataatttgactttattttatcttttgttata 28467420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 445
Target Start/End: Complemental strand, 47877127 - 47877080
Alignment:
Q  398 cttataggttacatgaaaacaatttgattttattttaacttgtgttat 445  Q
    ||||||| ||| ||||||||||||||||||||||||| ||| ||||||    
T  47877127 cttatagtttatatgaaaacaatttgattttattttatcttttgttat 47877080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 487
Target Start/End: Complemental strand, 2831730 - 2831656
Alignment:
Q  413 aaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaaa 487  Q
    |||| ||| ||| ||||||||| |||||||||| | ||||||||| ||  ||| ||||||||||||||| |||||    
T  2831730 aaaaaaatatgactttattttagcttgtgttattgaaatagcttattcacaagcgcttatgctataagcagcaaa 2831656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 452
Target Start/End: Complemental strand, 15360903 - 15360845
Alignment:
Q  394 acaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaata 452  Q
    ||||||||||| ||| ||||||||| ||||| ||||||||| ||| |||||||| ||||    
T  15360903 acaacttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaata 15360845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 416 - 510
Target Start/End: Complemental strand, 34405023 - 34404929
Alignment:
Q  416 acaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaaattatgtaatttatccaaacagga 510  Q
    ||||||| | ||||||||| ||||||| | || || |||||| || |||| ||||| | |||||||| ||||||| ||  |||||||||||||||    
T  34405023 acaattttactttattttatcttgtgtaaaagaaacagcttattcataagtgcttacgttataagcttcaaattaagttgtttatccaaacagga 34404929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 49557157 - 49557087
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||||||||||| ||| ||||| || |||| | ||||||||| ||| |||||||| |||| ||||    
T  49557157 tatgaaaacaacttatagcttaaatgaatactatttaactttattttatcttttgttatagaaataactta 49557087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 507
Target Start/End: Original strand, 11218090 - 11218135
Alignment:
Q  462 taagagcttatgctataagctgcaaattatgtaatttatccaaaca 507  Q
    |||||| || ||||||||||||||||||||||  ||||||||||||    
T  11218090 taagagattgtgctataagctgcaaattatgttgtttatccaaaca 11218135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 508
Target Start/End: Original strand, 31517887 - 31517928
Alignment:
Q  467 gcttatgctataagctgcaaattatgtaatttatccaaacag 508  Q
    |||||||||||||||||||||||| |  ||||||||||||||    
T  31517887 gcttatgctataagctgcaaattaagctatttatccaaacag 31517928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 484
Target Start/End: Complemental strand, 31624039 - 31623942
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgc 484  Q
    ||||| ||||||||||||  || || || ||||||||| |||| |||| | |||||||  | ||||||||| || |||| ||| ||||||||||||||    
T  31624039 tatgataacaacttatagcatatatcaatacaatttgactttaatttatcatgtgttaccgaaatagcttattcttaagcgctgatgctataagctgc 31623942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 507
Target Start/End: Complemental strand, 48064234 - 48064189
Alignment:
Q  462 taagagcttatgctataagctgcaaattatgtaatttatccaaaca 507  Q
    |||| |||||||||||||||||||||||| ||  ||||||||||||    
T  48064234 taagggcttatgctataagctgcaaattaagttgtttatccaaaca 48064189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 431
Target Start/End: Complemental strand, 15515557 - 15515513
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttatt 431  Q
    |||||||||||||||||| ||| | ||||||| ||||||||||||    
T  15515557 tatgaaaacaacttatagcttatacgaaaacattttgattttatt 15515513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 447
Target Start/End: Original strand, 34179926 - 34179986
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatag 447  Q
    ||||||||||  |||||| ||| || |||||||||||| ||||||||| ||| ||||||||    
T  34179926 tatgaaaacagtttatagcttagattaaaacaatttgactttattttatcttttgttatag 34179986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 447
Target Start/End: Original strand, 44032065 - 44032113
Alignment:
Q  399 ttataggttacatgaaaacaatttgattttattttaacttgtgttatag 447  Q
    |||||| ||| ||||||||||||||| ||||||||| ||| ||||||||    
T  44032065 ttatagcttatatgaaaacaatttgactttattttagcttttgttatag 44032113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 387 - 490
Target Start/End: Complemental strand, 12110376 - 12110273
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 486  Q
    |||||||||| ||||||| ||| |  |||||||||||| ||||||||| ||||||| |||| ||||| ||| || |||| |||||||||||||| |||||    
T  12110376 tatgaaaacagcttatagcttataccaaaacaatttgactttattttatcttgtgtaatagaaataggttattcataagtgcttatgctataagttgcaa 12110277  T
Q  487 atta 490  Q
    ||||    
T  12110276 atta 12110273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 457
Target Start/End: Original strand, 45813236 - 45813304
Alignment:
Q  389 tgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||||||||| ||| |||||||||| |||| ||||||||| ||| || ||||| |||||||||    
T  45813236 tgaaaacaacttatagattatatgaaaacaagttgactttattttatcttttggtatagaaatagctta 45813304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 446
Target Start/End: Complemental strand, 1417280 - 1417221
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttata 446  Q
    |||||||||||||||| | ||| ||||||||||||||| ||||||||| ||| |||||||    
T  1417280 tatgaaaacaacttattgcttatatgaaaacaatttgactttattttatcttttgttata 1417221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 490
Target Start/End: Complemental strand, 30535579 - 30535476
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 486  Q
    |||| ||||| ||||||| ||| | ||||||| ||  |||| |||||| ||| |||||||| | || ||||  |||||| ||||||||||||||||||||    
T  30535579 tatggaaacagcttatagattatacgaaaacacttcaatttaattttatcttttgttatagaagtaacttatacgtaagtgcttatgctataagctgcaa 30535480  T
Q  487 atta 490  Q
    ||||    
T  30535479 atta 30535476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 457
Target Start/End: Original strand, 5006563 - 5006633
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||||||||| |||||  ||| ||||||||| ||||| ||||||||| ||| |||||||| |||||||||    
T  5006563 tatgaaaacaatttataccttatatgaaaacagtttgactttattttatcttttgttataggaatagctta 5006633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 453
Target Start/End: Complemental strand, 30496720 - 30496654
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatag 453  Q
    |||||||||||| ||||||||| | ||||||||||||| |||||||||  || |||||||| |||||    
T  30496720 tatgaaaacaacctataggttatacgaaaacaatttgactttattttatattttgttatagaaatag 30496654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 447
Target Start/End: Original strand, 9527144 - 9527204
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatag 447  Q
    |||||||||||||||||| ||| ||||||||| ||||| |||||| || ||| ||||||||    
T  9527144 tatgaaaacaacttatagtttatatgaaaacagtttgactttattatatcttttgttatag 9527204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 455
Target Start/End: Original strand, 30456504 - 30456572
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagct 455  Q
    ||||||||| |||||||  ||| ||||||||||||||| ||||||||| ||| |||| ||| |||||||    
T  30456504 tatgaaaaccacttataacttatatgaaaacaatttgactttattttatcttttgttttagaaatagct 30456572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 449 - 509
Target Start/End: Original strand, 31002934 - 31002994
Alignment:
Q  449 aatagcttactcgtaagagcttatgctataagctgcaaattatgtaatttatccaaacagg 509  Q
    |||||||||| | |||| |||||||||||||| ||||||||| ||  ||||||||||||||    
T  31002934 aatagcttacacataagcgcttatgctataagatgcaaattaagttgtttatccaaacagg 31002994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 509
Target Start/End: Original strand, 425966 - 426013
Alignment:
Q  462 taagagcttatgctataagctgcaaattatgtaatttatccaaacagg 509  Q
    |||| ||||||||||||||||||||| || || |||||||||||||||    
T  425966 taagcgcttatgctataagctgcaaaataagttatttatccaaacagg 426013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 457
Target Start/End: Complemental strand, 35536100 - 35536053
Alignment:
Q  410 atgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||||||||||||| ||||||||| ||| |||||||| |||||||||    
T  35536100 atgaaaacaatttgactttattttatcttatgttatagaaatagctta 35536053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 510
Target Start/End: Original strand, 41668205 - 41668287
Alignment:
Q  428 tattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaaattatgtaatttatccaaacagga 510  Q
    ||||||| |||| ||||||| ||||||||| || |||| |||||||||||  |||||||| || |   |||||||||||||||    
T  41668205 tattttatcttgggttatagaaatagcttattcataagcgcttatgctatcggctgcaaaataagctgtttatccaaacagga 41668287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 510
Target Start/End: Original strand, 41668883 - 41668965
Alignment:
Q  428 tattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaaattatgtaatttatccaaacagga 510  Q
    ||||||| |||| ||||||| ||||||||| || |||| |||||||||||  |||||||| || |   |||||||||||||||    
T  41668883 tattttatcttgggttatagaaatagcttattcataagcgcttatgctatcggctgcaaaataagctgtttatccaaacagga 41668965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Original strand, 28340452 - 28340497
Alignment:
Q  389 tgaaaacaacttataggttacatgaaaacaatttgattttatttta 434  Q
    |||||||||||||||  ||||||||||||| ||||| |||||||||    
T  28340452 tgaaaacaacttataacttacatgaaaacagtttgactttatttta 28340497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 457
Target Start/End: Complemental strand, 46082052 - 46081979
Alignment:
Q  385 tctatgaaaacaacttataggttacatgaaaaca-atttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||||||||||||  ||| |||||||||  ||||| ||| |||||||||  ||||||| |||||||||    
T  46082052 tctatgaaaacaacttataacttatatgaaaacagttttgactttgttttaactttcgttatagaaatagctta 46081979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 446
Target Start/End: Original strand, 45777228 - 45777284
Alignment:
Q  390 gaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttata 446  Q
    ||||||||||||||| ||| ||||||||| ||||| || |||||| ||| |||||||    
T  45777228 gaaaacaacttatagtttatatgaaaacagtttgacttaattttatcttttgttata 45777284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 420 - 487
Target Start/End: Complemental strand, 53422345 - 53422278
Alignment:
Q  420 tttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaaa 487  Q
    ||||| ||||||||| |||||||| ||| ||||||||| || ||||||||||||||||||||||||||    
T  53422345 tttgaatttattttatcttgtgttgtagaaatagcttattcataagagcttatgctataagctgcaaa 53422278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 507
Target Start/End: Original strand, 20936283 - 20936404
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctt-actcgtaagagcttatgctataagctgca 485  Q
    |||||||||||| ||||| ||| || |||||||||||| || |||||| |||| |||||||  ||||||| |  | |||| |||||| ||||||||||||    
T  20936283 tatgaaaacaacctatagattatataaaaacaatttgacttcattttaccttgcgttatagatatagcttaaaacataagtgcttatactataagctgca 20936382  T
Q  486 aattatgtaatttatccaaaca 507  Q
    ||||| |   ||||||||||||    
T  20936383 aattaagctctttatccaaaca 20936404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 434
Target Start/End: Original strand, 6927547 - 6927594
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttatttta 434  Q
    |||||||||||||||||| ||||||||||||||||| | |||||||||    
T  6927547 tatgaaaacaacttatagtttacatgaaaacaatttaactttatttta 6927594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 481
Target Start/End: Original strand, 42321936 - 42322027
Alignment:
Q  390 gaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagc 481  Q
    ||||||||||||||  ||| ||||||||||||||| ||||||||| | | |||||||  ||||||||| || |||   ||||||||||||||    
T  42321936 gaaaacaacttataatttatatgaaaacaatttgactttattttatcatttgttataaaaatagcttattcataaacacttatgctataagc 42322027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 457
Target Start/End: Original strand, 24160549 - 24160619
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||||||||||| ||||||||||| | ||||| ||||| ||| ||| |||||||| || ||||||    
T  24160549 tatgaaaacaacttatagcttacatgaaaatagtttgaatttatattatcttttgttatagaaaaagctta 24160619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 49219155 - 49219085
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||||||||||| ||| ||||||| ||||||| |||||||||  || |||||||| |||| ||||    
T  49219155 tatgaaaacaacttatagcttatatgaaaataatttgactttattttatattttgttatagaaataactta 49219085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 453
Target Start/End: Complemental strand, 4071892 - 4071832
Alignment:
Q  393 aacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatag 453  Q
    |||||||||||| ||| ||||||| ||||||| ||||||||| ||| |||||||| |||||    
T  4071892 aacaacttatagcttatatgaaaataatttgactttattttatcttttgttatagaaatag 4071832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 13949903 - 13949951
Alignment:
Q  392 aaacaacttataggttacatgaaaacaatttgattttattttaacttgt 440  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||| |||||    
T  13949903 aaacaacttatagcttatatgaaaacaatttgactttattttatcttgt 13949951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 447
Target Start/End: Complemental strand, 25885875 - 25885815
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatag 447  Q
    |||||||||||||||||| ||||| ||||||||||| | ||||||||| ||| || |||||    
T  25885875 tatgaaaacaacttatagcttacacgaaaacaatttaactttattttatcttttgctatag 25885815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 3175967 - 3175897
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||| ||||||  |||| |||||||||||||| ||||||||| ||| || ||||| | |||||||    
T  3175967 tatgaaaacagcttataacttacttgaaaacaatttgactttattttatcttttgctatagaagtagctta 3175897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 453
Target Start/End: Complemental strand, 24929509 - 24929443
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatag 453  Q
    |||||||||||||||||| ||  ||||||||| || || ||||||||| ||| |||||||| |||||    
T  24929509 tatgaaaacaacttatagcttttatgaaaacagttagactttattttatcttttgttatagaaatag 24929443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 457
Target Start/End: Original strand, 29373941 - 29374011
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||||||||| |||||| ||| ||||| ||| |||||  |||||||| ||| |||||||| |||||||||    
T  29373941 tatgaaaacaaattatagcttatatgaatacattttgacattattttatcttctgttatagaaatagctta 29374011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 35958671 - 35958601
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||| ||| ||| ||| || |||  ||||||| ||||||||||||| |||||||| |||||||||    
T  35958671 tatgaaaacagcttctagcttatataaaacaaatttgactttattttaacttatgttatagaaatagctta 35958601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 453
Target Start/End: Original strand, 45128364 - 45128430
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatag 453  Q
    ||||||||||| |||||| ||| |||| || |||||||||| |||||| ||| |||||||| |||||    
T  45128364 tatgaaaacaatttatagcttatatgagaataatttgatttgattttatcttttgttatagaaatag 45128430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 457
Target Start/End: Complemental strand, 50746012 - 50745946
Alignment:
Q  391 aaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||| ||| ||| || |||||| ||||||||||||||| ||| |||||||  |||||||||    
T  50746012 aaaacaacttgtagtttatataaaaacagtttgattttattttatcttttgttataaaaatagctta 50745946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 10192298 - 10192241
Alignment:
Q  389 tgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttata 446  Q
    |||||||||||||||  ||| ||||||||||||||| |||||| || ||| |||||||    
T  10192298 tgaaaacaacttataacttatatgaaaacaatttgactttattctatcttttgttata 10192241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 444
Target Start/End: Complemental strand, 11917567 - 11917518
Alignment:
Q  395 caacttataggttacatgaaaacaatttgattttattttaacttgtgtta 444  Q
    |||||||||||||| ||||||| ||||||| ||||||||| ||| |||||    
T  11917567 caacttataggttatatgaaaataatttgactttattttatcttttgtta 11917518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 487
Target Start/End: Original strand, 6466100 - 6466200
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 486  Q
    |||| ||||||||||||| ||| |  |||| ||||| | ||||||| | |||||||||||  || | |||| || |||| ||||| ||||||||||||||    
T  6466100 tatggaaacaacttatagattatacaaaaagaatttcactttatttgatcttgtgttatataaacaacttattcataagcgcttacgctataagctgcaa 6466199  T
Q  487 a 487  Q
    |    
T  6466200 a 6466200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 445
Target Start/End: Complemental strand, 18630694 - 18630638
Alignment:
Q  389 tgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttat 445  Q
    |||||||||||||||| ||| |||||||| | |||| ||||||||| ||| ||||||    
T  18630694 tgaaaacaacttatagcttatatgaaaaccaattgactttattttatcttttgttat 18630638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 457
Target Start/End: Complemental strand, 21952966 - 21952907
Alignment:
Q  398 cttataggttacatgaaaacaatttgattttattttaacttg-tgttatagtaatagctta 457  Q
    ||||||| ||| ||||||||||||||| |||||||| ||||| |||||||| |||||||||    
T  21952966 cttatagcttatatgaaaacaatttgactttatttt-acttgttgttatagaaatagctta 21952907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 427
Target Start/End: Original strand, 30207625 - 30207665
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattt 427  Q
    |||||||||||||||||| ||| ||||||||| ||||||||    
T  30207625 tatgaaaacaacttatagcttatatgaaaacagtttgattt 30207665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 457
Target Start/End: Original strand, 44007940 - 44007996
Alignment:
Q  401 ataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||| ||| ||||||||||||||  ||||||||| ||| || |||||||||||||||    
T  44007940 atagcttatatgaaaacaatttgtctttattttatcttttggtatagtaatagctta 44007996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 457
Target Start/End: Original strand, 52645802 - 52645873
Alignment:
Q  385 tctatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||||||||||| ||||| | ||||| |||||| ||||| || |||||| ||| |||||||| |||||||||    
T  52645802 tctatgaaaacaagttata-gctacataaaaacagtttgaattgattttatcttttgttatagaaatagctta 52645873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 27592 - 27522
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||||||| ||| |||||||| |||| ||||    
T  27592 tatgaaaacaacttatagtttatatgaaaacaatttgactttattttatcttctgttatagaaataactta 27522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 42597417 - 42597347
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||||||||||| || |||||||||||||| | ||||||||| ||| |||||||| |||||||||    
T  42597417 tatgaaaacaacttatagcttgcatgaaaacaattttactttattttatcttttgttatagaaatagctta 42597347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 487
Target Start/End: Complemental strand, 926504 - 926403
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaaca-atttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgca 485  Q
    |||||||||||||||||| | | |  ||||||  ||||| ||||||||| |||||||||||| ||||||||| || || | ||||||||||| |||||||    
T  926504 tatgaaaacaacttatagataatacaaaaacagttttgactttattttatcttgtgttatagaaatagcttattcatatgcgcttatgctattagctgca 926405  T
Q  486 aa 487  Q
    ||    
T  926404 aa 926403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 420 - 507
Target Start/End: Original strand, 34522143 - 34522230
Alignment:
Q  420 tttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaaattatgtaatttatccaaaca 507  Q
    ||||| ||||||||| ||||||| |||| ||||||||| || |||| ||||||||| |||| |||||| || ||  ||||||||||||    
T  34522143 tttgactttattttatcttgtgtcatagaaatagcttattcataagcgcttatgctgtaagttgcaaaataagttttttatccaaaca 34522230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 434
Target Start/End: Complemental strand, 34770908 - 34770861
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttatttta 434  Q
    |||||||||||||||||| ||| ||||||||||||||| |||||||||    
T  34770908 tatgaaaacaacttatagcttaaatgaaaacaatttgactttatttta 34770861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 433
Target Start/End: Original strand, 9834843 - 9834889
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttatttt 433  Q
    |||||||||||||||||| ||| |||||||||||||| |||||||||    
T  9834843 tatgaaaacaacttatagcttatatgaaaacaatttggttttatttt 9834889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 29973097 - 29973027
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||||||||||| |||  |||||| | ||||| ||||||||| ||||||||| || |||||||||    
T  29973097 tatgaaaacaacttatagcttatgtgaaaatagtttgactttattttaccttgtgttaaagaaatagctta 29973027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 457
Target Start/End: Original strand, 30627956 - 30628026
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||||||||||| |||||   ||||||||| ||||||||||| ||| ||||| || |||||||||    
T  30627956 tatgaaaacaacttatagcttacacataaacaattttattttattttatcttttgttacagaaatagctta 30628026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 387 - 424
Target Start/End: Complemental strand, 7645994 - 7645957
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttga 424  Q
    |||||||||||||||||| |||||||||||||||||||    
T  7645994 tatgaaaacaacttatagcttacatgaaaacaatttga 7645957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 511
Target Start/End: Original strand, 16163332 - 16163456
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 486  Q
    ||||||| || ||||||  ||||| ||||| ||||  | ||| ||||| |||  ||||||| |||||||||  | |||| | |||||||||| |||||||    
T  16163332 tatgaaagcagcttatatcttacacgaaaaaaattaaactttgttttatctttagttatagaaatagcttatacataagtggttatgctataggctgcaa 16163431  T
Q  487 attatgtaatttatccaaacaggag 511  Q
    | || || |||||||||||||||||    
T  16163432 aataagtcatttatccaaacaggag 16163456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 9700017 - 9699947
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||| ||||||  |||  ||||||||||||||  |||||||||||| |||||| | |||||||||    
T  9700017 tatgaaaacagcttataatttatttgaaaacaatttgaccttattttaacttttgttatcgaaatagctta 9699947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 458
Target Start/End: Original strand, 39561598 - 39561666
Alignment:
Q  390 gaaaacaacttataggttacatgaaaacaatttgattttatttta-acttgtgttatagtaatagcttac 458  Q
    ||||||||||||||| ||| |||||||||| | || ||||||||| |||| |||||||| ||||||||||    
T  39561598 gaaaacaacttatagtttagatgaaaacaaatcgactttattttatactt-tgttatagaaatagcttac 39561666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 457
Target Start/End: Original strand, 13561368 - 13561436
Alignment:
Q  389 tgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||||||| |||||  ||| ||||||||||||||| ||||||| |  || |||||||| |||||||||    
T  13561368 tgaaaacaagttataatttatatgaaaacaatttgactttatttaattttctgttatagaaatagctta 13561436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 457
Target Start/End: Original strand, 2865718 - 2865782
Alignment:
Q  392 aaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||||||| |||||||| |||||||||    
T  2865718 aaacaacttataggttatatgaaaacaatttgactttgttttaactt-tgttatagaaatagctta 2865782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 455
Target Start/End: Complemental strand, 237413 - 237345
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagct 455  Q
    |||||||||||||||||  ||||||||| | ||||| ||||||||||| ||| |||||||| |||||||    
T  237413 tatgaaaacaacttataacttacatgaatataattttattttattttatcttctgttatagaaatagct 237345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 391 - 440
Target Start/End: Complemental strand, 2318656 - 2318607
Alignment:
Q  391 aaaacaacttataggttacatgaaaacaatttgattttattttaacttgt 440  Q
    |||||||||||||| ||| |||||||||||||||||| |||||| |||||    
T  2318656 aaaacaacttatagtttatatgaaaacaatttgatttgattttatcttgt 2318607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 387 - 452
Target Start/End: Original strand, 22214735 - 22214800
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaata 452  Q
    |||||||||||||||||||||| ||||| ||||||| | ||||||||| | | |||||||| ||||    
T  22214735 tatgaaaacaacttataggttatatgaatacaatttcactttattttatcctttgttatagaaata 22214800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 485
Target Start/End: Original strand, 2128331 - 2128403
Alignment:
Q  413 aaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgca 485  Q
    |||||||||| | ||||||||| ||| |||||||| |||||||||  | |||  |||||||||||||||||||    
T  2128331 aaaacaatttaactttattttatcttttgttatagaaatagcttatacataaacgcttatgctataagctgca 2128403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 511
Target Start/End: Complemental strand, 44014296 - 44014172
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 486  Q
    ||||||| || ||||||  ||||| ||||| ||||  | ||| ||||| |||  ||||||| |||||||||  | |||| | |||||||||| |||||||    
T  44014296 tatgaaagcagcttatatcttacacgaaaaaaattaaactttgttttatctttagttatagaaatagcttatacataagtggttatgctataggctgcaa 44014197  T
Q  487 attatgtaatttatccaaacaggag 511  Q
    | || || |||||||||||||||||    
T  44014196 aataagtcatttatccaaacaggag 44014172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 36587944 - 36587889
Alignment:
Q  436 cttgtgttatagtaata-gcttactcgtaagagcttatgctataagctgcaaatta 490  Q
    ||||||||||||||||| ||||| || |||| ||||||||||||||||| ||||||    
T  36587944 cttgtgttatagtaataagcttattcataagcgcttatgctataagctgtaaatta 36587889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 457
Target Start/End: Original strand, 10101530 - 10101600
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||||||| ||  ||| ||||||||||||| | ||||||||| ||| |||||||| |||| ||||    
T  10101530 tatgaaaacaacttttatcttatatgaaaacaatttaactttattttatcttttgttatagaaataactta 10101600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 457
Target Start/End: Original strand, 10212455 - 10212525
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||||||| ||  ||| ||||||||||||| | ||||||||| ||| |||||||| |||| ||||    
T  10212455 tatgaaaacaacttttatcttatatgaaaacaatttaactttattttatcttttgttatagaaataactta 10212525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 487
Target Start/End: Complemental strand, 44295545 - 44295448
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 486  Q
    |||||||||||||||||| ||| |  |||| |   ||||||||||||| |||| ||||||| ||||||||| ||  ||| |||||| ||| |||||||||    
T  44295545 tatgaaaacaacttatagattataaaaaaaaa---tgattttattttatcttgagttatagaaatagcttattcacaagcgcttatactacaagctgcaa 44295449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 434
Target Start/End: Complemental strand, 48397661 - 48397615
Alignment:
Q  388 atgaaaacaacttataggttacatgaaaacaatttgattttatttta 434  Q
    ||||||||||||||||| ||| || |||||||||||| |||||||||    
T  48397661 atgaaaacaacttatagcttaaataaaaacaatttgactttatttta 48397615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 428
Target Start/End: Complemental strand, 2923494 - 2923453
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgatttt 428  Q
    |||||||||| ||||||| |||||||||| ||||||||||||    
T  2923494 tatgaaaacagcttatagcttacatgaaagcaatttgatttt 2923453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 457
Target Start/End: Original strand, 32555036 - 32555105
Alignment:
Q  388 atgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||||||||||||||| ||| | ||||| ||||||| ||||||||| ||| |||| || |||| |||||    
T  32555036 atgaaaacaacttatagcttataggaaaataatttgactttattttatcttttgttgtaataattgctta 32555105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 456
Target Start/End: Original strand, 36783388 - 36783457
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctt 456  Q
    |||||||||| || |||| ||| ||||||||||||| | ||||||||| ||| || ||||| ||||||||    
T  36783388 tatgaaaacagctaatagtttatatgaaaacaattttactttattttatcttttggtatagaaatagctt 36783457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 445
Target Start/End: Original strand, 48364934 - 48364991
Alignment:
Q  388 atgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttat 445  Q
    ||||||||||||||| |  || ||||||||||||||| ||||||||| ||| ||||||    
T  48364934 atgaaaacaacttatggcgtaaatgaaaacaatttgactttattttatcttttgttat 48364991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 434
Target Start/End: Original strand, 3467445 - 3467489
Alignment:
Q  390 gaaaacaacttataggttacatgaaaacaatttgattttatttta 434  Q
    |||||||||||||||  || ||||||||||||||| |||||||||    
T  3467445 gaaaacaacttatagtctatatgaaaacaatttgactttatttta 3467489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 419
Target Start/End: Original strand, 22214713 - 22214745
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaa 419  Q
    |||||||||||||||||||||| ||||||||||    
T  22214713 tatgaaaacaacttataggttatatgaaaacaa 22214745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 457
Target Start/End: Complemental strand, 32703148 - 32703084
Alignment:
Q  393 aacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||| |||||| ||| ||||||||||||||| ||||||||| ||| | | |||| |||||||||    
T  32703148 aacaatttatagcttatatgaaaacaatttgagtttattttatcttttataatagaaatagctta 32703084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 509
Target Start/End: Original strand, 28039397 - 28039508
Alignment:
Q  398 cttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaaattatgtaatt 497  Q
    ||||||| ||| |||||||||||| || ||||||||| ||||||| |    ||||||||| || || | ||||||||||||| |||||||||| ||  ||    
T  28039397 cttatagtttatatgaaaacaattggactttattttatcttgtgtaaccaaaatagcttattcatatgcgcttatgctataaactgcaaattaagttgtt 28039496  T
Q  498 tatccaaacagg 509  Q
    ||||||||||||    
T  28039497 tatccaaacagg 28039508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 387 - 433
Target Start/End: Original strand, 35755556 - 35755602
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttatttt 433  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  35755556 tatgaaaacaacttatagcttacatgaaaacaatttgactttatttt 35755602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 389 - 490
Target Start/End: Complemental strand, 42907373 - 42907269
Alignment:
Q  389 tgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagctt---atgctataagctgca 485  Q
    |||||||||||||||| ||| | ||||||||||| | ||||||||  ||| |||||||| |||||||||   ||||| ||||   |||||||||||||||    
T  42907373 tgaaaacaacttatagcttaaacgaaaacaatttaactttattttttcttctgttatagaaatagcttatatgtaagtgcttatcatgctataagctgca 42907274  T
Q  486 aatta 490  Q
    |||||    
T  42907273 aatta 42907269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 11513914 - 11513858
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgtt 443  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||||||| ||| ||||    
T  11513914 tatgaaaacaacttatagcttatatgaaaacaatttgactttattttatcttttgtt 11513858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 434
Target Start/End: Complemental strand, 33942166 - 33942119
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttatttta 434  Q
    |||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  33942166 tatgaaaacaacttatagcttacatgaaaacagtttgactttatttta 33942119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 457
Target Start/End: Original strand, 656831 - 656901
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||||| ||||||| || ||| | ||||||||||||||| ||||||| ||| |||||||| |||||||||    
T  656831 tatgaaatcaacttacagcttatacgaaaacaatttgattatattttatcttttgttatagaaatagctta 656901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 485
Target Start/End: Complemental strand, 43259824 - 43259752
Alignment:
Q  413 aaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgca 485  Q
    ||||| |||||| ||||||||| |||||||||||| |||||||||  |||||| | |||||  ||||||||||    
T  43259824 aaaactatttgactttattttatcttgtgttatagaaatagcttatccgtaagtgattatgtcataagctgca 43259752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 506
Target Start/End: Complemental strand, 4090365 - 4090246
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 486  Q
    |||| ||||||||||||| ||| |   ||||||||||| ||||||||| |||||||||| | ||||||||| || ||    |||||||| |||||| |||    
T  4090365 tatgtaaacaacttatagattataccgaaacaatttgactttattttatcttgtgttatggaaatagcttattcatacacccttatgctttaagcttcaa 4090266  T
Q  487 attatgtaatttatccaaac 506  Q
    | || ||  |||||||||||    
T  4090265 aataagttgtttatccaaac 4090246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 457
Target Start/End: Original strand, 23143032 - 23143102
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||||||||||| |||| ||| | |||||||||||||||| |||||| ||| ||||| |  |||||||||    
T  23143032 tatgaaaacaactaatagcttataagaaaacaatttgatttgattttatcttttgttacaaaaatagctta 23143102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 457
Target Start/End: Original strand, 23554822 - 23554892
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||||||||||| |||| ||| | |||||||||||||||| |||||| ||| ||||| |  |||||||||    
T  23554822 tatgaaaacaactaatagcttataagaaaacaatttgatttgattttatcttttgttacaaaaatagctta 23554892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 28933840 - 28933770
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||||||||| |||||  ||| ||||||| |||||||||| |||||| ||| |||||||  |||||||||    
T  28933840 tatgaaaacaatttataacttaaatgaaaataatttgatttgattttatcttttgttatataaatagctta 28933770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 434
Target Start/End: Complemental strand, 33944620 - 33944574
Alignment:
Q  388 atgaaaacaacttataggttacatgaaaacaatttgattttatttta 434  Q
    |||||||||| |||||| ||| ||||||||||||||| |||||||||    
T  33944620 atgaaaacaatttatagcttatatgaaaacaatttgactttatttta 33944574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 457
Target Start/End: Complemental strand, 28902080 - 28902023
Alignment:
Q  400 tataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||| ||| ||||||||| ||| ||||||||||||||| |||||||  |||||||||    
T  28902080 tatagcttatatgaaaacagtttaattttattttaacttatgttataaaaatagctta 28902023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 444
Target Start/End: Complemental strand, 40145478 - 40145421
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgtta 444  Q
    |||||||||||||||||  |||||| ||||||| |||| ||||||||| ||| |||||    
T  40145478 tatgaaaacaacttataacttacataaaaacaacttgactttattttatcttttgtta 40145421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 445
Target Start/End: Original strand, 43529906 - 43529963
Alignment:
Q  388 atgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttat 445  Q
    ||||||||||||||||| ||| | |||| || ||||||||||||||| ||| ||||||    
T  43529906 atgaaaacaacttatagattataggaaagcagtttgattttattttatcttttgttat 43529963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 457
Target Start/End: Complemental strand, 787321 - 787277
Alignment:
Q  413 aaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||||| |||| ||||||||| |||||||||||| |||||||||    
T  787321 aaaacaagttgactttattttatcttgtgttatagaaatagctta 787277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 457
Target Start/End: Original strand, 11344340 - 11344408
Alignment:
Q  389 tgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||||||| |||||| ||  ||||||||||||||| ||| ||||| ||| |||||||| |||| ||||    
T  11344340 tgaaaacaatttatagcttgtatgaaaacaatttgactttcttttatcttttgttatagaaatatctta 11344408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 480
Target Start/End: Complemental strand, 4006730 - 4006637
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataag 480  Q
    |||||||||||||||||| ||| || |||||||||||| ||||||||| | | |||||||| |||| ||||  | ||||  |||||||||||||    
T  4006730 tatgaaaacaacttatagcttatataaaaacaatttgactttattttatcatttgttatagaaatatcttatgcataagcacttatgctataag 4006637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 457
Target Start/End: Original strand, 10452414 - 10452484
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||| ||||||||||||| ||| ||||||| | |||||||||||||||  || |||||||| |||||||||    
T  10452414 tatggaaacaacttatagcttatatgaaaatagtttgattttattttatattttgttatagaaatagctta 10452484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 457
Target Start/End: Original strand, 29274283 - 29274353
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||||||||  |||||| ||| ||||||||||||||| ||||||||| ||| || ||||| |||||||||    
T  29274283 tatgaaaacagtttatagcttatatgaaaacaatttgactttattttatcttttgctatagaaatagctta 29274353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 487
Target Start/End: Original strand, 33080662 - 33080736
Alignment:
Q  413 aaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaaa 487  Q
    |||||||||||| || | |||| | |||||||||| || |||||| || |||| |||||||||||||||||||||    
T  33080662 aaaacaatttgacttgaatttatcctgtgttatagaaaaagcttattcataagtgcttatgctataagctgcaaa 33080736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 457
Target Start/End: Complemental strand, 24782052 - 24782005
Alignment:
Q  410 atgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||||||||||| |||||| ||| |||||||| |||||||||    
T  24782052 atgaaaacaatttgatttgattttatcttttgttatagaaatagctta 24782005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 1403012 - 1402942
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||||||||| |||||| ||| ||||||| | ||| | ||||||||| ||| |||||||| |||||||||    
T  1403012 tatgaaaacaatttatagcttatatgaaaatagtttaactttattttatcttttgttatagaaatagctta 1402942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 457
Target Start/End: Original strand, 2027460 - 2027530
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||| |||| ||||||||||| ||||||| | ||||| ||||||||| ||| |||||||  |||||||||    
T  2027460 tatgagaacagcttataggttatatgaaaatagtttgactttattttatcttttgttataaaaatagctta 2027530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 457
Target Start/End: Original strand, 9093610 - 9093680
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||| ||||||| ||| | ||||||||||| | ||||||||| ||| || ||||| |||||||||    
T  9093610 tatgaaaacagcttatagcttatacgaaaacaatttaactttattttatcttttgatatagaaatagctta 9093680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 457
Target Start/End: Complemental strand, 33067174 - 33067105
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||||||||||| | | |||||||||||| || ||||||||  ||| | ||||||||||||||||    
T  33067174 tatgaaaacaacttatagctaa-atgaaaacaattcgactttattttcgcttttcttatagtaatagctta 33067105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 24836262 - 24836323
Alignment:
Q  396 aacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||||||| ||| | ||||||||||||| ||||||||| ||| |||||||| |||| ||||    
T  24836262 aacttatagtttatacgaaaacaatttgactttattttatcttttgttatagaaataactta 24836323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 447
Target Start/End: Original strand, 2727910 - 2727970
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatag 447  Q
    |||||||||||||||||| ||| || || |||||||||||||  |||| ||| ||||||||    
T  2727910 tatgaaaacaacttatagcttatatcaatacaatttgatttttgtttatcttttgttatag 2727970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 5623172 - 5623124
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaa 435  Q
    |||||||||||||||||| ||| |||||||| |||||  ||||||||||    
T  5623172 tatgaaaacaacttatagtttatatgaaaactatttggctttattttaa 5623124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 457
Target Start/End: Complemental strand, 34405095 - 34405051
Alignment:
Q  413 aaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    |||||||||||| ||||||||||||| | |||||| |||||||||    
T  34405095 aaaacaatttgactttattttaacttttattatagaaatagctta 34405051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 387 - 453
Target Start/End: Complemental strand, 10303815 - 10303751
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatag 453  Q
    |||||||||||||||  ||||| ||||||||||||||| ||||||||| ||| |||||||| |||||    
T  10303815 tatgaaaacaactta--ggttaaatgaaaacaatttgactttattttatcttttgttatagaaatag 10303751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 507
Target Start/End: Original strand, 18857454 - 18857574
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaatagcttactcgtaagagcttatgctataagctgcaa 486  Q
    |||||||||| ||||||| ||| |  |||||||||||| ||||||||| | |||||||| | ||||||||| || |||   ||||  ||| |||||||||    
T  18857454 tatgaaaacagcttatagattatagaaaaacaatttgactttattttatcgtgtgttattgaaatagcttattcataaacacttacactacaagctgcaa 18857553  T
Q  487 attatgtaatttatccaaaca 507  Q
    | || ||  ||||||||||||    
T  18857554 aataagttgtttatccaaaca 18857574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 434
Target Start/End: Complemental strand, 12975363 - 12975316
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttatttta 434  Q
    |||||| ||| ||||||| ||| |||||||||||||||||||||||||    
T  12975363 tatgaacacagcttatagcttatatgaaaacaatttgattttatttta 12975316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 430
Target Start/End: Original strand, 15905563 - 15905602
Alignment:
Q  391 aaaacaacttataggttacatgaaaacaatttgattttat 430  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  15905563 aaaacaacttatagtttacataaaaacaatttgattttat 15905602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 457
Target Start/End: Complemental strand, 10363745 - 10363696
Alignment:
Q  408 acatgaaaacaatttgattttattttaacttgtgttatagtaatagctta 457  Q
    ||||||||||||||| | ||||||||| ||| |||||||| |||||||||    
T  10363745 acatgaaaacaatttaactttattttatcttttgttatagaaatagctta 10363696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 452
Target Start/End: Original strand, 37526253 - 37526318
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaata 452  Q
    |||||||||||||||||| ||| ||||||||  |||||||| |||||| ||| | |||||| ||||    
T  37526253 tatgaaaacaacttatagcttatatgaaaactttttgatttgattttatcttttattatagaaata 37526318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 452
Target Start/End: Original strand, 37588414 - 37588479
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaata 452  Q
    |||||||||||||||||| ||| ||||||||  |||||||| |||||| ||| | |||||| ||||    
T  37588414 tatgaaaacaacttatagcttatatgaaaactttttgatttgattttatcttttattatagaaata 37588479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 452
Target Start/End: Original strand, 37690691 - 37690756
Alignment:
Q  387 tatgaaaacaacttataggttacatgaaaacaatttgattttattttaacttgtgttatagtaata 452  Q
    |||||||||||||||||| ||| ||||||||  |||||||| |||||| ||| | |||||| ||||    
T  37690691 tatgaaaacaacttatagcttatatgaaaactttttgatttgattttatcttttattatagaaata 37690756  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 434
Target Start/End: Complemental strand, 40120134 - 40120089
Alignment:
Q  389 tgaaaacaacttataggttacatgaaaacaatttgattttatttta 434  Q
    |||||||||| ||||| ||| |||||||||||||||||| ||||||    
T  40120134 tgaaaacaacctatagcttatatgaaaacaatttgatttgatttta 40120089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 433
Target Start/End: Complemental strand, 41016193 - 41016149
Alignment:
Q  389 tgaaaacaacttataggttacatgaaaacaatttgattttatttt 433  Q
    |||||||||||||||| ||| ||||||||| ||||| ||||||||    
T  41016193 tgaaaacaacttatagcttatatgaaaacagtttgaatttatttt 41016149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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