View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3571_low_4 (Length: 405)
Name: NF3571_low_4
Description: NF3571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3571_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 29942083 - 29942455
Alignment:
| Q |
17 |
actttatgaatctatgatcaataatttgtgtctttgtgtgcgtttcattatatgatttatttagatttgaatttgtggtcataatatgtaaaattaggga |
116 |
Q |
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| T |
29942083 |
actttatgaatctatgatcaataatttg--------tgtgcgtttcattatatgatttatttagatttgaatttgtggtcataatatgtaaaattaggga |
29942174 |
T |
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| Q |
117 |
ttatcataactgatacattcatctatttgattattttgatctacagttgagaactagggattatcaatttatgataattcgtatatcttatttttattct |
216 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29942175 |
ttatcataactgatacattcatctatttgatttttttgatctacaattgagaactagggattatcaatttatgataattcgtatatcttatttttattct |
29942274 |
T |
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| Q |
217 |
aaaaagcatgaaaagttatga----acataccttgtaagtttcttcataaacaggtagatatctaagctcagtatttgactctccccaaacctgaatcat |
312 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29942275 |
aaaaagcatgaaaagctatgaacatacataccttgtaagtttcttcataaacaggtagatatctaagctcagtatttgactctccccaaacctgaatcat |
29942374 |
T |
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| Q |
313 |
catcaaagccttctccttactaggaacaaaactctgatcaggatcatcaacaatcttaaccatttcatcaagaactctctc |
393 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29942375 |
catcaaagccttctccttactagcaacaaaactctgatcaggatcatcaacaatcttaaccatttcatcaagaactctctc |
29942455 |
T |
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