View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3571_low_6 (Length: 391)
Name: NF3571_low_6
Description: NF3571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3571_low_6 |
 | |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Original strand, 31221540 - 31221918
Alignment:
| Q |
13 |
aatatgacagacagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctgtcattggactagaagttgtccaattattttctccacta |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
31221540 |
aatatgacagacagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctttcattggactagaagttgtccaattattttctccacta |
31221639 |
T |
|
| Q |
113 |
catggatctatgttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacttgtactgcatattaattcaaaaccaaaatttgtttta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31221640 |
catggatctatgttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacttgtactgcatattaattcaaaaccaaaatttgtttta |
31221739 |
T |
|
| Q |
213 |
ttatcctcatgctagagacgaaaaacttaaaccgatagcgaaaatcgaacctgaaactttgaggagagcacattccaaagtctcaagtcaaaacgactag |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31221740 |
atatcctcatgctagagacgaaaaacttaaactgatagcgaaaatcgtacctgaaaccttgaggagagcacattccaaagtctcaagtcaaaacgactag |
31221839 |
T |
|
| Q |
313 |
accaactaaaactaagagatacgtttataaggtacataccttcttcttgtaagagagtagctccactagcaaatgaaga |
391 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
31221840 |
accaaataaaactaagagagacgtttataaggtacataccttcttcttgtaagagagtagctcctctagcaaatgaaga |
31221918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 391
Target Start/End: Original strand, 31201988 - 31202365
Alignment:
| Q |
13 |
aatatgacagacagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctgtca-ttggactagaagttgtccaattattttctccact |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | ||| || ||||| | ||||||||||||||||| | |
|
|
| T |
31201988 |
aatatgacagacagtggcattggcaaaagtgcaattgcatgtgacagcattttcaaaccctttaacttgcac-agaagatttccaattattttctccagt |
31202086 |
T |
|
| Q |
112 |
acatggatctatgttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacttgtactgcatattaattcaaaaccaaaatttgtttt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
31202087 |
acatggatctatgttgaagtcccaatccttcttcccaagtgtctttgctatctctttcataacttttactgtatattaattcaaaaccaaaatttgtttt |
31202186 |
T |
|
| Q |
212 |
attatcctcatgctagagacgaaaaacttaaaccgatagcgaaaatcgaacctgaaactttgaggagagcacattccaaagtctcaagtcaaaacgacta |
311 |
Q |
| |
|
| |||| |||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31202187 |
aatatc-tcatgccagagacgaaaaactaaaattgatagcgaaaatcgaacctgaaactttgaggagagcacattccaaagtctcaagtcaaaacgacta |
31202285 |
T |
|
| Q |
312 |
gaccaactaaaactaagagatacgtttataaggtacataccttcttcttgtaagagagtagctccactagcaaatgaaga |
391 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31202286 |
gaccaactaaaactaagagagacgtttataaggtacataccttcttcttgtaagagagtagctccactagcaaatgaaga |
31202365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 391
Target Start/End: Original strand, 31182964 - 31183339
Alignment:
| Q |
13 |
aatatgacagacagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctgtca-ttggactagaagttgtccaattattttctccact |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | || || ||||| | ||||||||||||||||||| |
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|
| T |
31182964 |
aatatgacagacagtggcattggcaaaagtgcaattgcatgtgacagcattttcaaaccctttgactttcac-agaagatttccaattattttctccact |
31183062 |
T |
|
| Q |
112 |
acatggatctatgttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacttgtactgcatattaattcaaaaccaaaatttgtttt |
211 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
31183063 |
acatggatctttgttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacctgtgctgtatattaattcaaaaccaaaatttgtttt |
31183162 |
T |
|
| Q |
212 |
attatcctcatgctagagacgaaaaacttaaaccgatagcgaaaatcgaacctgaaactttgaggagagcacattccaaagtctcaagtcaaaacgacta |
311 |
Q |
| |
|
| |||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
31183163 |
aatatcctcatg---gagacgaaaaacttaaacagatagcgaaaatcgaacctgaaaccttgaggagagcacattccaaagtctcaagtcaaaatgacta |
31183259 |
T |
|
| Q |
312 |
gaccaactaaaactaagagatacgtttataaggtacataccttcttcttgtaagagagtagctccactagcaaatgaaga |
391 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31183260 |
gaccaacttaaactaagagagacgtttataaggtacataccttcttcttgtaagagagtagctccactagcaaatgaaga |
31183339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 31237322 - 31237506
Alignment:
| Q |
13 |
aatatgacagacagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctgtcattggactagaagttgtccaattattttctccacta |
112 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||||||| || ||||||||| |||||||| ||||||||||||||| |||||| ||| ||| |||||| |
|
|
| T |
31237322 |
aatatggcacacagtggcattggcaaaatagcaattgcatgtaacagcatttgcaaaccctttcattggactagaagatgtccagttactttgtccactg |
31237421 |
T |
|
| Q |
113 |
catggatctatgttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacttgtactgcatattaattcaaaac |
198 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
31237422 |
catggatctatgctgaagtcccaatccttcttcccaagtgtcttagctatgtctttcataacttgtactgtatatt-attcaaaac |
31237506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 31248221 - 31248387
Alignment:
| Q |
13 |
aatatgacagacagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctgtcattggactagaagttgtccaattattttctccacta |
112 |
Q |
| |
|
|||||| |||||||||| |||||||||| ||||||||| || ||||||||| |||||||| ||||||||||||| |||||| ||| ||| |||||| |
|
|
| T |
31248221 |
aatatggcagacagtggaattggcaaaatagcaattgcatgtaacagcatttgcaaaccctttcattggactaga---tgtccagttactttgtccactg |
31248317 |
T |
|
| Q |
113 |
catggatctatgttgaagtcccaatccttcttcccaagtgtcttagctacatctttcataacttgtactg |
182 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31248318 |
catggatctatgctgaagtcccaatccttcttcccaagtgtcttagctatgtctttcataacttgtactg |
31248387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 31248818 - 31248871
Alignment:
| Q |
338 |
tataaggtacataccttcttcttgtaagagagtagctccactagcaaatgaaga |
391 |
Q |
| |
|
|||||||||| |||||||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
31248818 |
tataaggtacgtaccttcttcttctaataaagtagctccactagcaaatgaaga |
31248871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 31238264 - 31238317
Alignment:
| Q |
338 |
tataaggtacataccttcttcttgtaagagagtagctccactagcaaatgaaga |
391 |
Q |
| |
|
|||||||||| |||||||||||| ||| | ||||| |||||||||||||||||| |
|
|
| T |
31238264 |
tataaggtacgtaccttcttcttctaacaaagtagttccactagcaaatgaaga |
31238317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 36217056 - 36217208
Alignment:
| Q |
16 |
atgacagacagtggcattggcaaaagtgcaattgcaagtgacagcattttcaaaccctgtcattggactagaagttgtccaattattttctccactacat |
115 |
Q |
| |
|
|||||| |||||||||||| |||| || |||||||| ||||||||||||||| |||| ||| | || ||||| |||||||||| ||||||||||||| |
|
|
| T |
36217056 |
atgacaaacagtggcattgacaaaggtacaattgcatgtgacagcattttcactccctttcacttgaacagaagatgtccaattacgttctccactacat |
36217155 |
T |
|
| Q |
116 |
ggatctatgttgaagtcccaatccttcttcccaagtgtcttagctacatcttt |
168 |
Q |
| |
|
||||||| |||| |||||||| ||||| |||||||||||||||| |||||| |
|
|
| T |
36217156 |
ggatctacactgaaatcccaatctttctttccaagtgtcttagctatatcttt |
36217208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 170
Target Start/End: Complemental strand, 19974201 - 19974068
Alignment:
| Q |
37 |
aaaagtgcaattgcaagtgacagcattttca-aaccctgtcattggactagaagttgtccaattattttctccactacatggatctatgttgaagtccca |
135 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||| ||| |||| | | |||| | |||| ||||| ||||||||||||||||| |||||||||| |
|
|
| T |
19974201 |
aaaagagcaattgcaagtaacagcattttcagaaccatgtaattg-agttgaagatatccagttattccttccactacatggatctacactgaagtccca |
19974103 |
T |
|
| Q |
136 |
atccttcttcccaagtgtcttagctacatctttca |
170 |
Q |
| |
|
|||||| ||||||||||| ||| ||| ||||||| |
|
|
| T |
19974102 |
atcctttttcccaagtgttttacctatgtctttca |
19974068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 170
Target Start/End: Complemental strand, 20994293 - 20994160
Alignment:
| Q |
37 |
aaaagtgcaattgcaagtgacagcattttca-aaccctgtcattggactagaagttgtccaattattttctccactacatggatctatgttgaagtccca |
135 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||| ||| |||| | | |||| | |||| ||||| ||||||||||||||||| |||||||||| |
|
|
| T |
20994293 |
aaaagagcaattgcaagtaacagcattttcagaaccatgtaattg-agttgaagatatccagttattccttccactacatggatctacactgaagtccca |
20994195 |
T |
|
| Q |
136 |
atccttcttcccaagtgtcttagctacatctttca |
170 |
Q |
| |
|
|||||| ||||||||||| ||| ||| ||||||| |
|
|
| T |
20994194 |
atcctttttcccaagtgttttacctatgtctttca |
20994160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 170
Target Start/End: Original strand, 21018632 - 21018765
Alignment:
| Q |
37 |
aaaagtgcaattgcaagtgacagcattttca-aaccctgtcattggactagaagttgtccaattattttctccactacatggatctatgttgaagtccca |
135 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||| ||| |||| | | |||| | |||| ||||| ||||||||||||||||| |||||||||| |
|
|
| T |
21018632 |
aaaagagcaattgcaagtaacagcattttcagaaccatgtaattg-agttgaagatatccagttattccttccactacatggatctacactgaagtccca |
21018730 |
T |
|
| Q |
136 |
atccttcttcccaagtgtcttagctacatctttca |
170 |
Q |
| |
|
|||||| ||||||||||| ||| ||| ||||||| |
|
|
| T |
21018731 |
atcctttttcccaagtgttttacctatgtctttca |
21018765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 37360793 - 37360749
Alignment:
| Q |
254 |
aaatcgaacctgaaactttgaggagagcacattccaaagtctcaa |
298 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||| |||||| |
|
|
| T |
37360793 |
aaatcgaacctgacactttgagaagagcacattccaaaatctcaa |
37360749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 300
Target Start/End: Complemental strand, 3799981 - 3799935
Alignment:
| Q |
255 |
aatcgaacctgaaactttgagga-gagcacattccaaagtctcaagt |
300 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| ||||||||||| |
|
|
| T |
3799981 |
aatcgaacctgaaacttcgaggaggagcacattcctaagtctcaagt |
3799935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 9936962 - 9937026
Alignment:
| Q |
255 |
aatcgaacctgaaactttgagga-gagcacattccaaagtctcaagtcaaaacgactagaccaac |
318 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||| |||||||||||| | || ||||| ||||| |
|
|
| T |
9936962 |
aatcgaacctgaaacttcgaggaggagcacactcccaagtctcaagtcgataccactaggccaac |
9937026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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