View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3571_low_7 (Length: 387)
Name: NF3571_low_7
Description: NF3571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3571_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 22 - 362
Target Start/End: Original strand, 25442051 - 25442413
Alignment:
| Q |
22 |
acaacaacatccaataaccacatctttatgtgttaacatgttcatgtgttatataaagatgtagatagcaacaattaatgactgcatattca-------- |
113 |
Q |
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| T |
25442051 |
acaacaacatccaataaccacatctttatgtgttaacatgttcatgtgttatataaagatgtagatagcaacaattaatgattgcatattcacgtataac |
25442150 |
T |
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| Q |
114 |
--------------tgtattacatgaaaatatagatgaacaatcaccaatatctaatgacttgcaatctacatgatttacatgaagggtacaaagaacga |
199 |
Q |
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| T |
25442151 |
atgatatatgctcatgtattacataaaaatatagatgaacaatcaccaatatctaatgacttgcaacctacatgatttacatgaagggtacaaagaacga |
25442250 |
T |
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| Q |
200 |
acaagaaacnnnnnnnngataaactttgaactcgaaactcatactatgcacaaaagatactcaatcaaggagaagtgtggagaataatatgcctaatatc |
299 |
Q |
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| T |
25442251 |
acaagaaacaaaaaaaagataaactttgaactcgaaactcatgctatgcacaaaagatactcaatcaaggagaagtgtggagaataatatgcctaatatc |
25442350 |
T |
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| Q |
300 |
tttcgaagattttaaatttagatataaatatatttcagatttaaaataagatgttatttttgt |
362 |
Q |
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| T |
25442351 |
ttttgaagattttaaatttagatataaatatattttagatttaaaataagatgttatttttgt |
25442413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 31226048 - 31226004
Alignment:
| Q |
307 |
gattttaaatttagatataaatatatttcagatttaaaataagat |
351 |
Q |
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| T |
31226048 |
gattttaaatttagatttaaatatattctagatttaaattaagat |
31226004 |
T |
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