View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3572_high_1 (Length: 628)

Name: NF3572_high_1
Description: NF3572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3572_high_1
NF3572_high_1
[»] chr6 (41 HSPs)
chr6 (3-614)||(27601510-27602121)
chr6 (484-599)||(25547760-25547875)
chr6 (484-590)||(25513664-25513770)
chr6 (484-590)||(26145786-26145892)
chr6 (484-590)||(25485779-25485885)
chr6 (247-612)||(26638169-26638532)
chr6 (247-612)||(26744135-26744498)
chr6 (237-590)||(27662397-27662746)
chr6 (557-606)||(26980182-26980231)
chr6 (376-599)||(28795189-28795392)
chr6 (455-598)||(26886890-26887032)
chr6 (258-604)||(26625907-26626246)
chr6 (258-604)||(26731884-26732223)
chr6 (246-607)||(26952390-26952731)
chr6 (467-590)||(26649265-26649387)
chr6 (467-590)||(26755233-26755355)
chr6 (484-590)||(25582496-25582602)
chr6 (484-590)||(26058708-26058814)
chr6 (484-590)||(26078678-26078784)
chr6 (455-529)||(26851360-26851433)
chr6 (556-606)||(26961884-26961934)
chr6 (475-590)||(26805290-26805404)
chr6 (475-599)||(27695851-27695974)
chr6 (475-590)||(27590386-27590500)
chr6 (484-599)||(28789165-28789280)
chr6 (484-598)||(31287360-31287474)
chr6 (238-404)||(31287555-31287721)
chr6 (484-529)||(25491409-25491454)
chr6 (309-413)||(25491243-25491347)
chr6 (475-590)||(27674834-27674948)
chr6 (376-436)||(28789308-28789368)
chr6 (379-433)||(31290372-31290426)
chr6 (558-603)||(26851286-26851331)
chr6 (486-590)||(26658771-26658875)
chr6 (486-590)||(26764742-26764846)
chr6 (473-589)||(27608378-27608493)
chr6 (473-529)||(27681807-27681862)
chr6 (247-364)||(26658986-26659100)
chr6 (247-364)||(26764957-26765071)
chr6 (250-342)||(26851561-26851650)
chr6 (558-600)||(27681736-27681778)
[»] chr8 (2 HSPs)
chr8 (484-612)||(22024043-22024171)
chr8 (473-529)||(29271097-29271152)
[»] chr4 (8 HSPs)
chr4 (250-590)||(18696488-18696822)
chr4 (455-590)||(18686894-18687028)
chr4 (455-590)||(18721359-18721493)
chr4 (484-590)||(18728809-18728915)
chr4 (455-590)||(18676845-18676979)
chr4 (455-529)||(18652763-18652836)
chr4 (444-590)||(18726268-18726412)
chr4 (444-529)||(18682036-18682120)
[»] scaffold0419 (2 HSPs)
scaffold0419 (484-599)||(10315-10430)
scaffold0419 (376-436)||(10458-10518)
[»] chr1 (3 HSPs)
chr1 (475-599)||(265591-265714)
chr1 (484-598)||(28129923-28130037)
chr1 (561-606)||(28124969-28125014)
[»] scaffold0277 (4 HSPs)
scaffold0277 (484-599)||(1956-2071)
scaffold0277 (376-436)||(1868-1928)
scaffold0277 (484-599)||(10919-11034)
scaffold0277 (376-436)||(10831-10891)


Alignment Details
Target: chr6 (Bit Score: 372; Significance: 0; HSPs: 41)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 3 - 614
Target Start/End: Original strand, 27601510 - 27602121
Alignment:
Q  3 tgagatggacatcatctttctcccaactaagctccacatgattcaagtcctcttttttaattgtttgtatcatttcaggcatatcttcgaaagtgttgta 102  Q
    ||||||| | ||||||||||||||||  || ||||||||||||||| || | ||||||||||||| ||||||||||||||||||  |  ||| ||| |||    
T  27601510 tgagatgtaaatcatctttctcccaatcaatctccacatgattcaattcattttttttaattgttcgtatcatttcaggcatatggttaaaattgtcgta 27601609  T
Q  103 aatatgtagttttaattccagatcaaacaaaaatgtatgttccgacggcagacgtatatattcataggttaattggaaaggaagatgacattgatagcca 202  Q
    |||| ||  ||||||| |||||||||||||||||||||||| |||||||||| ||| || ||||||| ||||||   || ||||| |||||| ||  |||    
T  27601610 aatacgtgattttaatcccagatcaaacaaaaatgtatgtttcgacggcagaagtacattttcatagtttaattcccaatgaagaggacattcatcacca 27601709  T
Q  203 tttacataaacattgacttgtggaatcttcacagattctggattaagaataatacaagttatacaagggatcttttcatgaaacgagaaagaaattggtt 302  Q
    |||| | | | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  27601710 tttagaaacaaattgacttgtggaatctccacagattctggattaagaataatacaagttatacaagggatctttccatgaaaagagaaagaaattggtt 27601809  T
Q  303 ggtttaccctgatttgatactcgaaccaatttggaatcccctcacttccggttggaaaataaaattccgtgtgtccagcctcgtgtagctcctgttagtt 402  Q
     ||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| | |||||||||    
T  27601810 cgttaaccttgatttgatactcgaaccaatttggaatcccctcacttccagttggaaaataaaaatccgtgtgtccagccttgtgtagttgctgttagtt 27601909  T
Q  403 tagaataagatgtattacattatcgattatatatcaatatcaaatactatccatcaaatattactgcacgataaaacaacaaacaaacctgactcaataa 502  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||    
T  27601910 aagaataagatgtattacattatcgattatatatcaatatcaaatactatctatcaaatactactgcacaataaaacaacaaacaaacctgactcaataa 27602009  T
Q  503 caatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaaccctctaatttcctcaagaaacttgcagcca 602  Q
    || || ||||||||||||||||||||| | ||| |||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27602010 cattcttctacttgaggaactcaatgattcacagtcctttgcatgaaatattttaagatttggtggaaaccctctaatttcctcaagaaacttgcagcca 27602109  T
Q  603 tccacattaatg 614  Q
    ||||||| ||||    
T  27602110 tccacataaatg 27602121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 484 - 599
Target Start/End: Complemental strand, 25547875 - 25547760
Alignment:
Q  484 aacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaaccctctaatttc 583  Q
    ||||||||||||||| ||||| || | ||||||||||||||||||||||||| || ||||||  ||  ||||||||||||||||||| ||||||||||||    
T  25547875 aacaaacctgactcattaacattcttatacttgaggaactcaatgaataacactcgtctgcaaaaagcctttcaagatttggtggaatccctctaatttc 25547776  T
Q  584 ctcaagaaacttgcag 599  Q
    ||||||||| ||||||    
T  25547775 ctcaagaaaattgcag 25547760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 484 - 590
Target Start/End: Complemental strand, 25513770 - 25513664
Alignment:
Q  484 aacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaaccctctaatttc 583  Q
    ||||||||||||||| ||||| || | ||||||||||||||||||||||||| || ||||||  ||  ||||||||||||||||||| ||||||||||||    
T  25513770 aacaaacctgactcattaacattcttatacttgaggaactcaatgaataacactcgtctgcaaaaagcctttcaagatttggtggaatccctctaatttc 25513671  T
Q  584 ctcaaga 590  Q
    |||||||    
T  25513670 ctcaaga 25513664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 484 - 590
Target Start/End: Complemental strand, 26145892 - 26145786
Alignment:
Q  484 aacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaaccctctaatttc 583  Q
    ||||||||||||||| ||||| || | ||||||||||||||||||||||||| || ||||||  ||  ||||||||||||||||||| ||||||||||||    
T  26145892 aacaaacctgactcattaacattcttatacttgaggaactcaatgaataacactcgtctgcacaaagcctttcaagatttggtggaatccctctaatttc 26145793  T
Q  584 ctcaaga 590  Q
    |||||||    
T  26145792 ctcaaga 26145786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 484 - 590
Target Start/End: Complemental strand, 25485885 - 25485779
Alignment:
Q  484 aacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaaccctctaatttc 583  Q
    ||||||||||||||| ||||| || | ||||||||||| ||||||||||||| || | ||||  ||  ||||||||||||||||||| ||||||||||||    
T  25485885 aacaaacctgactcattaacattcttatacttgaggaattcaatgaataacactcgtttgcaaaaagcctttcaagatttggtggaatccctctaatttc 25485786  T
Q  584 ctcaaga 590  Q
    |||||||    
T  25485785 ctcaaga 25485779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 247 - 612
Target Start/End: Complemental strand, 26638532 - 26638169
Alignment:
Q  247 aagaataatacaagttatacaagggatcttttcatgaaacgagaaagaaattggttggtttaccctgatttgatactcgaaccaatttggaatcccctca 346  Q
    ||||| |||| |||| ||| |||||||||||| | ||||| ||||||||||||     | | ||||| |||||| ||||||||||| ||||||| ||||     
T  26638532 aagaagaatagaagtaatagaagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctcctct 26638433  T
Q  347 cttccggttggaaaataaaattccgtgtgtccagcctcgtgtagctcctgttagtttagaataagatgtattaca--ttatcgattatatatcaatatca 444  Q
     ||| ||||||||||  ||  || |||  |||||| || ||||| | |||||||||||| ||||||| |||||||  ||||| | ||||||| ||         
T  26638432 gttctggttggaaaacgaatatcagtgcatccagcttcatgtagtttctgttagtttagtataagatatattacacattatcaaatatatatgaa----- 26638338  T
Q  445 aatactatccatcaaatattactgcacgataaaacaacaa--acaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctct 542  Q
     |||||||  | |||||| ||  ||| |||||||||||||  ||||||||||||||||| |  || |||||||||||||||||||||||  ||||||  |    
T  26638337 -atactatataacaaatactatggcaagataaaacaacaacaacaaacctgactcaatagccttcttctacttgaggaactcaatgaatcgcattccatt 26638239  T
Q  543 gcatgaaatctttcaagatttggtggaaaccctctaatttcctcaagaaacttgcagccatccacattaa 612  Q
    |||   ||    |  ||||||||||||| |||||||||||| ||||||  ||||||  |||||| |||||    
T  26638238 gcagacaagtaatttagatttggtggaatccctctaatttcttcaagagccttgcattcatccaaattaa 26638169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 247 - 612
Target Start/End: Complemental strand, 26744498 - 26744135
Alignment:
Q  247 aagaataatacaagttatacaagggatcttttcatgaaacgagaaagaaattggttggtttaccctgatttgatactcgaaccaatttggaatcccctca 346  Q
    ||||| |||| |||| ||| |||||||||||| | ||||| ||||||||||||     | | ||||| |||||| ||||||||||| ||||||| ||||     
T  26744498 aagaagaatagaagtaatagaagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctcctct 26744399  T
Q  347 cttccggttggaaaataaaattccgtgtgtccagcctcgtgtagctcctgttagtttagaataagatgtattaca--ttatcgattatatatcaatatca 444  Q
     ||| ||||||||||  ||  || |||  |||||| || ||||| | |||||||||||| ||||||| |||||||  ||||| | ||||||| ||         
T  26744398 gttctggttggaaaacgaatatcagtgcatccagcttcatgtagtttctgttagtttagtataagatatattacacattatcaaatatatatgaa----- 26744304  T
Q  445 aatactatccatcaaatattactgcacgataaaacaacaa--acaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctct 542  Q
     |||||||  | |||||| ||  ||| |||||||||||||  ||||||||||||||||| |  || |||||||||||||||||||||||  ||||||  |    
T  26744303 -atactatataacaaatactatggcaagataaaacaacaacaacaaacctgactcaatagccttcttctacttgaggaactcaatgaatcgcattccatt 26744205  T
Q  543 gcatgaaatctttcaagatttggtggaaaccctctaatttcctcaagaaacttgcagccatccacattaa 612  Q
    |||   ||    |  ||||||||||||| |||||||||||| ||||||  ||||||  |||||| |||||    
T  26744204 gcagacaagtaatttagatttggtggaatccctctaatttcttcaagagccttgcattcatccaaattaa 26744135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 237 - 590
Target Start/End: Original strand, 27662397 - 27662746
Alignment:
Q  237 attctggattaagaataatacaagttatacaagggatcttttcatgaaacgagaaagaaattggttggtttaccctgatttgatactcgaaccaatttgg 336  Q
    |||| ||| |||||||||||||||||||| |||||||||||| |   ||| ||||||||||||  | || | |||||| ||||| ||||||||||| |||    
T  27662397 attccggaataagaataatacaagttatagaagggatctttttacataaccagaaagaaattgagttgtgtcccctgacttgatgctcgaaccaatctgg 27662496  T
Q  337 aatcccctcacttccggttgg-aaaataaaattccgtgtgtccagcctcgtgtagctcctgttagtttagaataagat---gtattacattatcgattat 432  Q
    |||||||||  |||||||||| |||| || |||   ||   ||||| ||||| ||   ||||||| |||| |||||||   ||||| || | | ||| ||    
T  27662497 aatcccctctgttccggttggcaaaacaatatt-gttgcaaccagcatcgtgcagtcgctgttagattagcataagatacagtatttcagtgtggataat 27662595  T
Q  433 atatcaatatcaaatactatccatcaaatattactgcacgataaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatgaata 532  Q
          |||| ||||||||   ||||||||  | |||| ||||||| || |||||||||||||||||||||| || ||||||||||||||||||||| |     
T  27662596 ------atatgaaatactaaatatcaaataccagtgcaagataaaataa-aaacaaacctgactcaataacattcttctacttgaggaactcaatgattt 27662688  T
Q  533 acattcctctgcatgaaatctttcaagatttggtggaaaccctctaatttcctcaaga 590  Q
    |||| | ||||||| ||   ||   ||||| ||||||| |||||||||||||||||||    
T  27662689 acatccttctgcataaagatttgttagattgggtggaatccctctaatttcctcaaga 27662746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 557 - 606
Target Start/End: Complemental strand, 26980231 - 26980182
Alignment:
Q  557 aagatttggtggaaaccctctaatttcctcaagaaacttgcagccatcca 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26980231 aagatttggtggaaaccctctaatttcctcaagaaacttgcagccatcca 26980182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 376 - 599
Target Start/End: Complemental strand, 28795392 - 28795189
Alignment:
Q  376 tccagcctcgtgtagctcctgttagtttagaataagatgtattacattatcgattatatatcaatatcaaatactatccatcaaatattactgcacgata 475  Q
    ||||||||| ||||||| |||||||||||||||||||| |||||||||||||||| |      ||||  |||||| |       ||||   |||| ||||    
T  28795392 tccagcctcatgtagcttctgttagtttagaataagatatattacattatcgattgt------atatgtaatactct-------atat---tgcaagata 28795309  T
Q  476 aaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaaccct 575  Q
    ||||    |||||||||||||||||| || || ||||||||||||||||||||| |  ||| ||  ||||  ||  ||||||||||||||||||| ||||    
T  28795308 aaac----aacaaacctgactcaatagcattcttctacttgaggaactcaatgatttgcatcccattgcagaaagcctttcaagatttggtggaatccct 28795213  T
Q  576 ctaatttcctcaagaaacttgcag 599  Q
    ||||||||||| ||| ||||||||    
T  28795212 ctaatttcctcgagagacttgcag 28795189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 455 - 598
Target Start/End: Complemental strand, 26887032 - 26886890
Alignment:
Q  455 atcaaatattactgcacgataaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaa--tc 552  Q
    |||||||| || |||| |||| ||||| |||||||||||||||||||||| || |||||||||||||||||||||||  ||||     ||| ||||  ||    
T  26887032 atcaaatactattgcaagatagaacaa-aaacaaacctgactcaataacattcttctacttgaggaactcaatgaatggcattttatagca-gaaaggtc 26886935  T
Q  553 tttcaagatttggtggaaaccctctaatttcctcaagaaacttgca 598  Q
    ||| |||||||||||| | ||||||||||||||||||| |||||||    
T  26886934 ttt-aagatttggtggtatccctctaatttcctcaagagacttgca 26886890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 604
Target Start/End: Complemental strand, 26626246 - 26625907
Alignment:
Q  258 aagttatacaagggatcttttcatgaaacgagaaagaaattggttggtttaccctgatttgatactcgaaccaatttggaatcccctcacttccggt-tg 356  Q
    |||| ||| |||||||||||| | ||||| ||||||||||||  | || | |||||||||||| ||||||||||| ||||||||||||  |  || | ||    
T  26626246 aagtaatagaagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcccctctttggcgttatg 26626147  T
Q  357 gaaaataaaattccgtgtgtccagcctcgtgtagctcctgttagtttagaataagatgtattacattatcgattatatatcaatatcaaatactatccat 456  Q
    ||||  || |||  |||  ||||||||| ||||  | ||||| ||||||||||| || |||||||||||| |||||      |||| |||||||||   |    
T  26626146 gaaacgaatatt-ggtgcatccagcctcatgtactttctgtttgtttagaataaaatatattacattatcaattat------atataaaatactatgtgt 26626054  T
Q  457 caaatattactgcacgataaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttc 556  Q
       ||| || |||| || ||||| || ||||||||||||| ||||||| || |||| ||||||||||||||||  | ||||||  ||||   ||    |     
T  26626053 tttatactattgcaagaaaaaaccac-aacaaacctgacttaataacattcttctagttgaggaactcaatgataagcattccgttgcagacaagtaatt 26625955  T
Q  557 aagatttggtggaaaccctctaatttcctcaagaaacttgcagccatc 604  Q
     ||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  26625954 tagatttggtggaatccctctaatttcctcaagagactcgcagccatc 26625907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 604
Target Start/End: Complemental strand, 26732223 - 26731884
Alignment:
Q  258 aagttatacaagggatcttttcatgaaacgagaaagaaattggttggtttaccctgatttgatactcgaaccaatttggaatcccctcacttccggt-tg 356  Q
    |||| ||| |||||||||||| | ||||| ||||||||||||  | || | |||||||||||| ||||||||||| ||||||||||||  |  || | ||    
T  26732223 aagtaatagaagggatctttttacgaaaccagaaagaaattgtgttgtgtcccctgatttgatgctcgaaccaatctggaatcccctctttggcgttatg 26732124  T
Q  357 gaaaataaaattccgtgtgtccagcctcgtgtagctcctgttagtttagaataagatgtattacattatcgattatatatcaatatcaaatactatccat 456  Q
    ||||  || |||  |||  ||||||||| ||||  | ||||| ||||||||||| || |||||||||||| |||||      |||| |||||||||   |    
T  26732123 gaaacgaatatt-ggtgcatccagcctcatgtactttctgtttgtttagaataaaatatattacattatcaattat------atataaaatactatgtgt 26732031  T
Q  457 caaatattactgcacgataaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttc 556  Q
       ||| || |||| || ||||| || ||||||||||||| ||||||| || |||| ||||||||||||||||  | ||||||  ||||   ||    |     
T  26732030 tttatactattgcaagaaaaaaccac-aacaaacctgacttaataacattcttctagttgaggaactcaatgataagcattccgttgcagacaagtaatt 26731932  T
Q  557 aagatttggtggaaaccctctaatttcctcaagaaacttgcagccatc 604  Q
     ||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  26731931 tagatttggtggaatccctctaatttcctcaagagactcgcagccatc 26731884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 607
Target Start/End: Complemental strand, 26952731 - 26952390
Alignment:
Q  246 taagaataatacaagttatacaagggatcttttcatgaaacgagaaagaaattggttggtttaccctgatttgatactcgaaccaatttggaatcccctc 345  Q
    |||||| ||||||||||||| |||||||||||  | ||||| ||||||||||||    || | ||||| |||| | ||| ||||||| ||||||||||||    
T  26952731 taagaaaaatacaagttatagaagggatctttctacgaaaccagaaagaaattgt---gtctcccctggtttggtgctcaaaccaatctggaatcccctc 26952635  T
Q  346 acttccggttggaaaataaaattccgtgtgtccagcctcgtgtagctcctgttagtttagaataagatgtattacattatcgattatatatcaatatcaa 445  Q
      ||  | |||| |||| ||  |  |||  |||||||| || ||| | |||| ||||||||||||||| | ||| |||||||||||||||||||          
T  26952634 tgttttgtttgggaaatgaatataggtgcatccagccttgtttagtttctgtaagtttagaataagatatgttaaattatcgattatatatcaa------ 26952541  T
Q  446 atactatccatcaaatattactgcacgataaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgca 545  Q
    |||||||       |||||   ||| ||||||||||||| |||||||||||||||| || || |||||||| ||||||||| || |  || ||  |||||    
T  26952540 atactat-------atatt---gcaagataaaacaacaa-caaacctgactcaatagcattcttctacttgcggaactcaacgactcgcaatctactgca 26952452  T
Q  546 tgaaatctttcaagatttggtggaaaccctctaatttcctcaagaaacttgcagccatccac 607  Q
      || |||||| ||||| ||||||| |||||| |||||||||||  | | ||||||||||||    
T  26952451 gaaagtctttctagattcggtggaatccctctgatttcctcaagggaatagcagccatccac 26952390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 467 - 590
Target Start/End: Complemental strand, 26649387 - 26649265
Alignment:
Q  467 tgcacgataaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggt 566  Q
    |||| ||||||||||||| | ||||||||||||||||| || ||||||||||||||||||||| | ||||  |  ||||  ||  | || ||||||||||    
T  26649387 tgcaagataaaacaacaa-cgaacctgactcaataacattcttctacttgaggaactcaatgattcacatctcaatgcagaaagccatttaagatttggt 26649289  T
Q  567 ggaaaccctctaatttcctcaaga 590  Q
    |||| ||| |||||||||||||||    
T  26649288 ggaatccccctaatttcctcaaga 26649265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 467 - 590
Target Start/End: Complemental strand, 26755355 - 26755233
Alignment:
Q  467 tgcacgataaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggt 566  Q
    |||| ||||||||||||| | ||||||||||||||||| || ||||||||||||||||||||| | ||||  |  ||||  ||  | || ||||||||||    
T  26755355 tgcaagataaaacaacaa-cgaacctgactcaataacattcttctacttgaggaactcaatgattcacatctcaatgcagaaagccatttaagatttggt 26755257  T
Q  567 ggaaaccctctaatttcctcaaga 590  Q
    |||| ||| |||||||||||||||    
T  26755256 ggaatccccctaatttcctcaaga 26755233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 484 - 590
Target Start/End: Complemental strand, 25582602 - 25582496
Alignment:
Q  484 aacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaaccctctaatttc 583  Q
    ||||||||||||||| ||||| || | |||||||||||||||||||||||||     |||||  ||   |||||||||||||||||| ||||||||||||    
T  25582602 aacaaacctgactcattaacattcttatacttgaggaactcaatgaataacaaatgactgcaaaaagaatttcaagatttggtggaatccctctaatttc 25582503  T
Q  584 ctcaaga 590  Q
    | |||||    
T  25582502 cacaaga 25582496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 484 - 590
Target Start/End: Complemental strand, 26058814 - 26058708
Alignment:
Q  484 aacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaaccctctaatttc 583  Q
    ||||||||||||||| ||||| || | |||||||||||||||||||||||||     |||||  ||   |||||||||||||||||| ||||||||||||    
T  26058814 aacaaacctgactcattaacattcttatacttgaggaactcaatgaataacaaatgactgcaaaaagaatttcaagatttggtggaatccctctaatttc 26058715  T
Q  584 ctcaaga 590  Q
    | |||||    
T  26058714 cacaaga 26058708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 484 - 590
Target Start/End: Complemental strand, 26078784 - 26078678
Alignment:
Q  484 aacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaaccctctaatttc 583  Q
    ||||||||||||||| ||||| || | |||||||||||||||||||||||||     |||||  ||   |||||||||||||||||| ||||||||||||    
T  26078784 aacaaacctgactcattaacattcttatacttgaggaactcaatgaataacaaatgactgcaaaaagaatttcaagatttggtggaatccctctaatttc 26078685  T
Q  584 ctcaaga 590  Q
    | |||||    
T  26078684 cacaaga 26078678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 455 - 529
Target Start/End: Complemental strand, 26851433 - 26851360
Alignment:
Q  455 atcaaatattactgcacgataaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatga 529  Q
    |||||||| ||||||| |||||||||| || ||||||||||||||||||| || ||| |||||||||||||||||    
T  26851433 atcaaatactactgcaagataaaacaataa-caaacctgactcaataacattcttctgcttgaggaactcaatga 26851360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 556 - 606
Target Start/End: Complemental strand, 26961934 - 26961884
Alignment:
Q  556 caagatttggtggaaaccctctaatttcctcaagaaacttgcagccatcca 606  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  26961934 caagatttggtggaatccctctaatttcctcaagaaacttgcagtcatcca 26961884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 475 - 590
Target Start/End: Complemental strand, 26805404 - 26805290
Alignment:
Q  475 aaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatct-ttcaagatttggtggaaacc 573  Q
    |||||||||| ||||||||||||| ||||| || ||||||||| ||||||||||| | |||| | |||||| |||| || ||  ||||| ||||||| ||    
T  26805404 aaaacaacaa-caaacctgactcattaacattcttctacttgatgaactcaatgatttacatccttctgca-gaaagctcttttagattcggtggaatcc 26805307  T
Q  574 ctctaatttcctcaaga 590  Q
    |||||||||||||||||    
T  26805306 ctctaatttcctcaaga 26805290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 475 - 599
Target Start/End: Original strand, 27695851 - 27695974
Alignment:
Q  475 aaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaaccc 574  Q
    |||||||||| ||||||||||||| ||||| || ||||| ||| ||||||||||| |  ||||| |  ||||  |  ||| ||||||||||||||| |||    
T  27695851 aaaacaacaa-caaacctgactcattaacattcttctacatgatgaactcaatgatttgcattcataagcatagagacttccaagatttggtggaatccc 27695949  T
Q  575 tctaatttcctcaagaaacttgcag 599  Q
    |||||||||||||||  ||||||||    
T  27695950 tctaatttcctcaagggacttgcag 27695974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 475 - 590
Target Start/End: Original strand, 27590386 - 27590500
Alignment:
Q  475 aaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaaccc 574  Q
    |||||||||| ||||||||| ||| ||||| || ||||||||| ||||||||||| | |||| | |  |||| ||    ||||||||||||||||| |||    
T  27590386 aaaacaacaa-caaacctgattcattaacattcttctacttgatgaactcaatgattcacatccataagcatcaaccacttcaagatttggtggaatccc 27590484  T
Q  575 tctaatttcctcaaga 590  Q
    ||||||||||||||||    
T  27590485 tctaatttcctcaaga 27590500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 599
Target Start/End: Complemental strand, 28789280 - 28789165
Alignment:
Q  484 aacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaaccctctaatttc 583  Q
    |||||||||||||||||| || |  ||||||||||||||||||||| |  ||| |   ||||  ||  ||| ||||||||||||||| ||||||||||||    
T  28789280 aacaaacctgactcaatagcatttttctacttgaggaactcaatgatttgcatccgattgcagaaagccttgcaagatttggtggaatccctctaatttc 28789181  T
Q  584 ctcaagaaacttgcag 599  Q
    ||| ||| ||||||||    
T  28789180 ctccagagacttgcag 28789165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 598
Target Start/End: Complemental strand, 31287474 - 31287360
Alignment:
Q  484 aacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatct-ttcaagatttggtggaaaccctctaattt 582  Q
    ||||||||||||||  ||||| || |||||||||||||||||| || | |||||  |  ||  |||| || ||||||||||||||||| |||||||||||    
T  31287474 aacaaacctgactcgttaacattcttctacttgaggaactcaacgattcacatttataagcg-gaaagctcttcaagatttggtggaatccctctaattt 31287376  T
Q  583 cctcaagaaacttgca 598  Q
    |||||||| |||||||    
T  31287375 cctcaagagacttgca 31287360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 238 - 404
Target Start/End: Complemental strand, 31287721 - 31287555
Alignment:
Q  238 ttctggattaagaataatacaagttatacaagggatcttttcatgaaacgagaaagaaattggttggtttaccctgatttgatactcgaaccaatttgga 337  Q
    |||||||  ||||| |||| |||| ||| |||||||||||| | ||||| |||||| |||||     | | |||||||||| | ||| ||||||||||||    
T  31287721 ttctggagaaagaagaatataagtaatagaagggatctttttacgaaaccagaaagtaattgtgctttgtcccctgatttggtgctcaaaccaatttgga 31287622  T
Q  338 atcccctcacttccggttggaaaataaaattccgtgtgtccagcctcgtgtagctcctgttagttta 404  Q
    ||||| ||  ||||  |||| ||||||||||| |||  ||||||||| ||||| | |||||||||||    
T  31287621 atcccatctgttccatttgggaaataaaattcagtgcctccagcctcatgtagtttctgttagttta 31287555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 529
Target Start/End: Original strand, 25491409 - 25491454
Alignment:
Q  484 aacaaacctgactcaataacaatcgtctacttgaggaactcaatga 529  Q
    ||||||||||||||||||||| || |||||||||||||||||||||    
T  25491409 aacaaacctgactcaataacattcttctacttgaggaactcaatga 25491454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 413
Target Start/End: Original strand, 25491243 - 25491347
Alignment:
Q  309 ccctgatttgatactcgaaccaatttggaatcccctcacttccggttggaaaataaaattccgtgtgtccagcctcgtgtagctcctgttagtttagaat 408  Q
    |||| ||||| | ||||||||||| |||||| |||||||||  | |||| ||| |||  || |||  ||||||||||||||| | |||||||||||||||    
T  25491243 ccctaatttggtgctcgaaccaatctggaattccctcacttgtgtttggcaaacaaatctcggtgcatccagcctcgtgtagttgctgttagtttagaat 25491342  T
Q  409 aagat 413  Q
    |||||    
T  25491343 aagat 25491347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 475 - 590
Target Start/End: Original strand, 27674834 - 27674948
Alignment:
Q  475 aaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatct-ttcaagatttggtggaaacc 573  Q
    |||||||||| | ||||||||||| ||||| || ||||| ||||||||||||||| | |||||  | |||  |||| || || |||||||||||||| ||    
T  27674834 aaaacaacaa-ctaacctgactcattaacattcttctacatgaggaactcaatgatttacattgatatgcg-gaaagctctttaagatttggtggaatcc 27674931  T
Q  574 ctctaatttcctcaaga 590  Q
    |||||||||||||||||    
T  27674932 ctctaatttcctcaaga 27674948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 28789368 - 28789308
Alignment:
Q  376 tccagcctcgtgtagctcctgttagtttagaataagatgtattacattatcgattatatat 436  Q
    ||||||||| | ||||| |||||||||||||||||||| | |||||||||||||| |||||    
T  28789368 tccagcctcatttagcttctgttagtttagaataagatatgttacattatcgattgtatat 28789308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 433
Target Start/End: Complemental strand, 31290426 - 31290372
Alignment:
Q  379 agcctcgtgtagctcctgttagtttagaataagatgtattacattatcgattata 433  Q
    |||||| ||||| | |||||||||||||||||||| |||||||||||| ||||||    
T  31290426 agcctcatgtagtttctgttagtttagaataagatatattacattatctattata 31290372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 558 - 603
Target Start/End: Complemental strand, 26851331 - 26851286
Alignment:
Q  558 agatttggtggaaaccctctaatttcctcaagaaacttgcagccat 603  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  26851331 agattcggtggaatccctctaatttcctcaagaaaattgcagccat 26851286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 590
Target Start/End: Complemental strand, 26658875 - 26658771
Alignment:
Q  486 caaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaaccctctaatttcct 585  Q
    |||||||| |||||||||| || ||||| ||||||  ||||||||||||| | | ||||||  ||   ||| |||||  |||||| ||||||||||||||    
T  26658875 caaacctggctcaataacattcttctacatgaggatgtcaatgaataacagttcactgcatccaagtgttcgagattctgtggaatccctctaatttcct 26658776  T
Q  586 caaga 590  Q
    |||||    
T  26658775 caaga 26658771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 590
Target Start/End: Complemental strand, 26764846 - 26764742
Alignment:
Q  486 caaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaaccctctaatttcct 585  Q
    |||||||| |||||||||| || ||||| ||||||  ||||||||||||| | | ||||||  ||   ||| |||||  |||||| ||||||||||||||    
T  26764846 caaacctggctcaataacattcttctacatgaggatgtcaatgaataacagttcactgcatccaagtgttcgagattctgtggaatccctctaatttcct 26764747  T
Q  586 caaga 590  Q
    |||||    
T  26764746 caaga 26764742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 473 - 589
Target Start/End: Original strand, 27608378 - 27608493
Alignment:
Q  473 ataaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaac 572  Q
    |||||||||||| | ||||||||||| ||||  || | ||||||||||||||||||| |  |||||   ||||  ||  | || |||||||||||||| |    
T  27608378 ataaaacaacaa-ctaacctgactcattaactttcttttacttgaggaactcaatgatttgcattcgcttgcagaaagccatttaagatttggtggaatc 27608476  T
Q  573 cctctaatttcctcaag 589  Q
    |||||||||||||||||    
T  27608477 cctctaatttcctcaag 27608493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 473 - 529
Target Start/End: Complemental strand, 27681862 - 27681807
Alignment:
Q  473 ataaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatga 529  Q
    |||||||||||| | ||||||||||| ||||| || |||||||||||||||||||||    
T  27681862 ataaaacaacaa-ctaacctgactcattaacattcttctacttgaggaactcaatga 27681807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 364
Target Start/End: Complemental strand, 26659100 - 26658986
Alignment:
Q  247 aagaataatacaagttatacaagggatcttttcatgaaacgagaaagaaattggttggtttaccctgatttgatactcgaaccaatttggaatcccctca 346  Q
    ||||| ||||||| | ||| |||||||||||| | ||||| ||||||||| || |||   | |||||||||| | ||||||||||| ||| |||| ||||    
T  26659100 aagaagaatacaaataatagaagggatctttttacgaaaccagaaagaaactgtttg---tcccctgatttggtgctcgaaccaatctgggatcctctca 26659004  T
Q  347 cttccggttggaaaataa 364  Q
       |||||||||||||||    
T  26659003 gccccggttggaaaataa 26658986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 364
Target Start/End: Complemental strand, 26765071 - 26764957
Alignment:
Q  247 aagaataatacaagttatacaagggatcttttcatgaaacgagaaagaaattggttggtttaccctgatttgatactcgaaccaatttggaatcccctca 346  Q
    ||||| ||||||| | ||| |||||||||||| | ||||| ||||||||| || |||   | |||||||||| | ||||||||||| ||| |||| ||||    
T  26765071 aagaagaatacaaataatagaagggatctttttacgaaaccagaaagaaactgtttg---tcccctgatttggtgctcgaaccaatctgggatcctctca 26764975  T
Q  347 cttccggttggaaaataa 364  Q
       |||||||||||||||    
T  26764974 gccccggttggaaaataa 26764957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 250 - 342
Target Start/End: Complemental strand, 26851650 - 26851561
Alignment:
Q  250 aataatacaagttatacaagggatcttttcatgaaacgagaaagaaattggttggtttaccctgatttgatactcgaaccaatttggaatccc 342  Q
    ||||||||| |||||| |||||||||||| | ||||| |||| |||||||    |||| ||||| |||| | ||||||||||| |||||||||    
T  26851650 aataatacatgttatagaagggatctttttacgaaaccagaaggaaattg---tgttttccctgctttggtgctcgaaccaatctggaatccc 26851561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 558 - 600
Target Start/End: Complemental strand, 27681778 - 27681736
Alignment:
Q  558 agatttggtggaaaccctctaatttcctcaagaaacttgcagc 600  Q
    ||||||||||||| ||||||||||||||||||| ||| |||||    
T  27681778 agatttggtggaatccctctaatttcctcaagagactcgcagc 27681736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 484 - 612
Target Start/End: Complemental strand, 22024171 - 22024043
Alignment:
Q  484 aacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaaccctctaatttc 583  Q
    ||||||||||||||||||||| || ||||||||||||||||||||| |  |||||   ||||  ||  ||||||||||||||||||| ||||||||||||    
T  22024171 aacaaacctgactcaataacattcttctacttgaggaactcaatgatttgcattctattgcagaaagcctttcaagatttggtggaatccctctaatttc 22024072  T
Q  584 ctcaagaaacttgcagccatccacattaa 612  Q
    ||||| | | ||||||| ||||| |||||    
T  22024071 ctcaacagatttgcagcgatccaaattaa 22024043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 473 - 529
Target Start/End: Original strand, 29271097 - 29271152
Alignment:
Q  473 ataaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatga 529  Q
    |||||||||||| | ||||||||||| ||||| || | |||||||||||||||||||    
T  29271097 ataaaacaacaa-ctaacctgactcattaacattcttttacttgaggaactcaatga 29271152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 250 - 590
Target Start/End: Original strand, 18696488 - 18696822
Alignment:
Q  250 aataatacaagttatacaagggatcttttcatgaaacgagaaagaaattggttggtttaccctgatttgatactcgaaccaatttggaatcccctcactt 349  Q
    ||||||| || ||||| |||||||||||| | | ||| |||||||||||| |||     ||||| |||||| ||||||||||| ||||||||||||  ||    
T  18696488 aataataaaatttatagaagggatctttttacggaaccagaaagaaattgattgac---ccctgctttgatgctcgaaccaatctggaatcccctctgtt 18696584  T
Q  350 ccggttggaaaataaaattccgtgtgtccagcctcgtgtagctcctgttagtttagaataagatgtatt----acattatcgattatatatcaatatcaa 445  Q
    ||| |||| ||| ||||||  |||   |||||||| ||||  | |||||||||||| ||||||| |||     ||||| | |||||||| | ||          
T  18696585 ccgtttgggaaagaaaatttggtgcacccagcctcatgtaattgctgttagtttagcataagatatatattacacattgttgattatatgtgaa------ 18696678  T
Q  446 atactatccatcaaatattactgcacgataaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgca 545  Q
    ||||||   |||||||| || |||| || |||||||||| ||||||||||||||||||| || ||||||||||||||||||||| | ||||   | ||||    
T  18696679 atactacatatcaaatactattgcaagaaaaaacaacaa-caaacctgactcaataacattcttctacttgaggaactcaatgatttacatcgatatgca 18696777  T
Q  546 tgaa-atctttcaagatttggtggaaaccctctaatttcctcaaga 590  Q
    | || || |||  ||||| ||||||| |||||||||||||||||||    
T  18696778 tcaagatattt-gagattcggtggaagccctctaatttcctcaaga 18696822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 455 - 590
Target Start/End: Original strand, 18686894 - 18687028
Alignment:
Q  455 atcaaatattactgcacgataaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaa-atct 553  Q
    |||||||| || |||| || |||||||||| ||||||||||||||||||| || ||||||||||||||||||||| | ||| || | ||||| || || |    
T  18686894 atcaaatactattgcaagaaaaaacaacaa-caaacctgactcaataacattcttctacttgaggaactcaatgatttacaatcatatgcatcaagatat 18686992  T
Q  554 ttcaagatttggtggaaaccctctaatttcctcaaga 590  Q
    ||  ||||| ||||||| |||||||||||||||||||    
T  18686993 tt-gagattcggtggaatccctctaatttcctcaaga 18687028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 455 - 590
Target Start/End: Original strand, 18721359 - 18721493
Alignment:
Q  455 atcaaatattactgcacgataaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaa-atct 553  Q
    |||||||| || |||| || |||||||||| ||||||||||||||||||| || ||||||||||||||||||||| | ||||||   ||| | || || |    
T  18721359 atcaaatactattgcaagaaaaaacaacaa-caaacctgactcaataacattcttctacttgaggaactcaatgatttacattctaatgcttcaagatat 18721457  T
Q  554 ttcaagatttggtggaaaccctctaatttcctcaaga 590  Q
    ||  ||||| |||||||||||||||||||||||||||    
T  18721458 tt-gagattcggtggaaaccctctaatttcctcaaga 18721493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 484 - 590
Target Start/End: Original strand, 18728809 - 18728915
Alignment:
Q  484 aacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaaccctctaatttc 583  Q
    ||||||||||||||||||||| || |||| |||||||||||||||| | ||||||   ||||| ||  | ||  ||||| ||||||||||||||||||||    
T  18728809 aacaaacctgactcaataacattcttctagttgaggaactcaatgatttacattcaaatgcatcaagacatttgagattcggtggaaaccctctaatttc 18728908  T
Q  584 ctcaaga 590  Q
    |||||||    
T  18728909 ctcaaga 18728915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 455 - 590
Target Start/End: Original strand, 18676845 - 18676979
Alignment:
Q  455 atcaaatattactgcacgataaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctt 554  Q
    |||||||| || |||| || |||||||||| ||||||||||||||||||| || ||||||||||||||||||||| | ||||     ||| | |||   |    
T  18676845 atcaaatactattgcaagaaaaaacaacaa-caaacctgactcaataacattcttctacttgaggaactcaatgatttacatcttaatgcttcaaaatat 18676943  T
Q  555 tcaagatttggtggaaaccctctaatttcctcaaga 590  Q
    |  ||||| |||||||||||||||||||||||||||    
T  18676944 ttgagattcggtggaaaccctctaatttcctcaaga 18676979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 455 - 529
Target Start/End: Original strand, 18652763 - 18652836
Alignment:
Q  455 atcaaatattactgcacgataaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatga 529  Q
    |||||||| || |||| || |||||||||| ||||||||||||||||||| || |||||||||||||||||||||    
T  18652763 atcaaatactattgcaagaaaaaacaacaa-caaacctgactcaataacattcttctacttgaggaactcaatga 18652836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 444 - 590
Target Start/End: Original strand, 18726268 - 18726412
Alignment:
Q  444 aaatactatccatcaaatattactgcacgataaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctg 543  Q
    ||||||||  ||||||||| || |||| || |||||||||| |||||||||||||| || |||| |||| |||||||||||||||| | |||| |   ||    
T  18726268 aaatactacacatcaaatactattgcaagaaaaaacaacaa-caaacctgactcaacaa-aatcttctatttgaggaactcaatgatttacatcctaatg 18726365  T
Q  544 catgaaatctttcaagatttggtggaaaccctctaatttcctcaaga 590  Q
    || |||  | ||  ||||| |||||||||||||||||||||||||||    
T  18726366 cacgaagacatttgagattcggtggaaaccctctaatttcctcaaga 18726412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 444 - 529
Target Start/End: Original strand, 18682036 - 18682120
Alignment:
Q  444 aaatactatccatcaaatattactgcacgataaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatga 529  Q
    ||||||||  ||||||||| || |||| || |||||||||| |||||||||||||| |||| || |||| ||||| ||||||||||    
T  18682036 aaatactacacatcaaatactattgcaagaaaaaacaacaa-caaacctgactcaacaacattcttctatttgagcaactcaatga 18682120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 484 - 599
Target Start/End: Complemental strand, 10430 - 10315
Alignment:
Q  484 aacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaaccctctaatttc 583  Q
    |||||||||||||||||| || || ||||||||||||||||||||| |  ||| ||  ||||  ||  |||||||||||||||| || ||||||||||||    
T  10430 aacaaacctgactcaatagcattcttctacttgaggaactcaatgatttgcatcccattgcagaaagcctttcaagatttggtgcaatccctctaatttc 10331  T
Q  584 ctcaagaaacttgcag 599  Q
    ||| ||| ||||||||    
T  10330 ctccagagacttgcag 10315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 10518 - 10458
Alignment:
Q  376 tccagcctcgtgtagctcctgttagtttagaataagatgtattacattatcgattatatat 436  Q
    ||||||||| | ||||| |||||||||||||||||||| | |||||||||||||| |||||    
T  10518 tccagcctcatttagcttctgttagtttagaataagatatgttacattatcgattgtatat 10458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 475 - 599
Target Start/End: Original strand, 265591 - 265714
Alignment:
Q  475 aaaacaacaaacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatct-ttcaagatttggtggaaacc 573  Q
    |||||||||| ||||||||||||||||||| || | ||||||||||||||||||| |  ||||| |  |||  ||| || || |||||||||||||| ||    
T  265591 aaaacaacaa-caaacctgactcaataacattcttttacttgaggaactcaatgagttgcattcatacgca-aaaagctctttaagatttggtggaatcc 265688  T
Q  574 ctctaatttcctcaagaaacttgcag 599  Q
    ||||||||||||||||| ||||||||    
T  265689 ctctaatttcctcaagatacttgcag 265714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 598
Target Start/End: Original strand, 28129923 - 28130037
Alignment:
Q  484 aacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaaccctctaatttc 583  Q
    |||||||||||||||||| || || ||||| ||||||| | ||||| | ||||  |  ||||  ||| | ||  || |||||||||||||||||||||||    
T  28129923 aacaaacctgactcaatagcattcttctacatgaggaagttaatgattcacatcgcattgcagaaaaccgttttaggtttggtggaaaccctctaatttc 28130022  T
Q  584 ctcaagaaacttgca 598  Q
    ||||||| |||||||    
T  28130023 ctcaagagacttgca 28130037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 28124969 - 28125014
Alignment:
Q  561 tttggtggaaaccctctaatttcctcaagaaacttgcagccatcca 606  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||    
T  28124969 tttggtggaatccctctaatttcctcaagagacttgcagtcatcca 28125014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 484 - 599
Target Start/End: Original strand, 1956 - 2071
Alignment:
Q  484 aacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatc-tttcaagatttggtggaaaccctctaattt 582  Q
    |||||||||||||||||| || || ||||||||| ||||||||||| |  ||| ||  |||| |||| | |||||||||||||||||| |||||||||||    
T  1956 aacaaacctgactcaatagcattcttctacttgaagaactcaatgatttgcatcccattgca-gaaagcatttcaagatttggtggaatccctctaattt 2054  T
Q  583 cctcaagaaacttgcag 599  Q
    |||| ||| ||||||||    
T  2055 cctccagagacttgcag 2071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 376 - 436
Target Start/End: Original strand, 1868 - 1928
Alignment:
Q  376 tccagcctcgtgtagctcctgttagtttagaataagatgtattacattatcgattatatat 436  Q
    ||||||||| ||||||| |||||||||||||||||||| | |||||||||||||| |||||    
T  1868 tccagcctcatgtagcttctgttagtttagaataagatatgttacattatcgattgtatat 1928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 599
Target Start/End: Original strand, 10919 - 11034
Alignment:
Q  484 aacaaacctgactcaataacaatcgtctacttgaggaactcaatgaataacattcctctgcatgaaatctttcaagatttggtggaaaccctctaatttc 583  Q
    |||||||||||||||||| || |  ||||||||||||||||||||| |  ||| |   ||||  ||  ||| ||||||||||||||| ||||||||||||    
T  10919 aacaaacctgactcaatagcatttttctacttgaggaactcaatgatttgcatccgattgcagaaagccttgcaagatttggtggaatccctctaatttc 11018  T
Q  584 ctcaagaaacttgcag 599  Q
    ||| ||| ||||||||    
T  11019 ctccagagacttgcag 11034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 436
Target Start/End: Original strand, 10831 - 10891
Alignment:
Q  376 tccagcctcgtgtagctcctgttagtttagaataagatgtattacattatcgattatatat 436  Q
    ||||||||| | ||||| |||||||||||||||||||| | |||||||||||||| |||||    
T  10831 tccagcctcatttagcttctgttagtttagaataagatatgttacattatcgattgtatat 10891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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