View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3572_high_10 (Length: 323)
Name: NF3572_high_10
Description: NF3572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3572_high_10 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 31034070 - 31033796
Alignment:
| Q |
16 |
attcaggataaaagtgtttcaaccgatactatttcggaaaaggtaaatgctttcctgaaactggataaggtcataatcatcagggtttggatattcaata |
115 |
Q |
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| T |
31034070 |
attcaggataaaagtgtttcaaccgatactatttcggaaaaggtaaatgctttcctgaaactggataaggtcataatcatcagggtttggatattcaata |
31033971 |
T |
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| Q |
116 |
tcaaagtcgtggactaaccctctaccttttttaggagttggcgtcaagtcagaagataaggggagatctggtgtagaaatctcatatctgcttcaggctg |
215 |
Q |
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| T |
31033970 |
tcgaagtcgtggactaaccctttaccttttttaggagttggcgtcaagtcagaagattaggggagatctggtgtagaaatctcatatctgcttcaggctg |
31033871 |
T |
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| Q |
216 |
gcattctagtcagggatggtaaaaatcattacttctgaaatgggaggtaggaaatgcaatgtgttgagggttttt |
290 |
Q |
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| T |
31033870 |
gcattctagtcagggatggtaaaaatcattacttctgaaatgggaggtaggaaatgcaatgtgttgagggttttt |
31033796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 105 - 282
Target Start/End: Original strand, 31097993 - 31098170
Alignment:
| Q |
105 |
gatattcaatatcaaagtcgtggactaaccctctaccttttttaggagttggcgtcaagtcagaagataaggggagatctggtgtagaaatctcatatct |
204 |
Q |
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| T |
31097993 |
gatatacaatatcgcagtggtggactaaacctttagtttgtttaggacttggcatcgagtcagaagactaggggaggttttgtgtaaatatctcgtatct |
31098092 |
T |
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| Q |
205 |
gcttcaggctggcattctagtcagggatggtaaaaatcattacttctgaaatgggaggtaggaaatgcaatgtgttga |
282 |
Q |
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| T |
31098093 |
gactcaggctggcattgtagtcagggatagttaaaatcattacttctgaagtgggaggaaggcaatgcaatgtcttga |
31098170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 151
Target Start/End: Original strand, 31093211 - 31093302
Alignment:
| Q |
60 |
aaatgctttcctgaaactggataaggtcataatcatcagggtttggatattcaatatcaaagtcgtggactaaccctctaccttttttagga |
151 |
Q |
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| T |
31093211 |
aaatgctttcccggaactggatgagatcaaaatcattgggatatggatatgcaatatcacattagtggactaaccctctagcttgtttagga |
31093302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 30933 - 31207
Alignment:
| Q |
16 |
attcaggataaaagtgtttcaaccgatactatttcggaaaaggtaaatgctttcctgaaactggataaggtcataatcatcagggtttggatattcaata |
115 |
Q |
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||||||||||||| |||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||| |
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| T |
30933 |
attcaggataaaaatgtttcgaccgatactatttcagaaaaggtaagtgctttcctgaaactggataaggtcaaaatcatcgaggtttggatatgcaata |
31032 |
T |
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| Q |
116 |
tcaaagtcgtggactaaccctctaccttttttaggagttggcgtcaagtcagaagataaggggagatctggtgtagaaatctcatatctgcttcaggctg |
215 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
31033 |
tcaaagttgtggactaaccctctaccttttttaggagttggcgtcaagtcagaagattaggggagatctggtgtagaaatcccatttctgcttcaggctg |
31132 |
T |
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| Q |
216 |
gcattctagtcagggatggtaaaaatcattacttctgaaatgggaggtaggaaatgcaatgtgttgagggttttt |
290 |
Q |
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| T |
31133 |
gcattctagtcagggatggtaaaaatcattacttctgaaatgggaggtaggaaatgcaatgtgttgagggttttt |
31207 |
T |
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