View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3572_high_13 (Length: 292)
Name: NF3572_high_13
Description: NF3572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3572_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 274
Target Start/End: Original strand, 34086111 - 34086364
Alignment:
| Q |
17 |
tatcgtcgaagggagggtataattttacttgcaatctctattttactcctttggtttgaggactagataagaaggatgtgtttgtgattcgagtggagca |
116 |
Q |
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| T |
34086111 |
tatcgtcgaagggagggtataattttacttgcaatctctattttacccctttggtttgaggactagataag---gatgtgtttgtgattcgagtggagca |
34086207 |
T |
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| Q |
117 |
ggtttcaatttgtcattggaaaaatccttaaattgtttgttgtctgagaaaattgatgcataatggccctggccttggcaacaggaccgtttgttcatag |
216 |
Q |
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| T |
34086208 |
ggtttcaatttgtcattggaaaaatccttaaattgtttgttgtctgagaaaattgatgcataatggccctggccttggcaacaggaccgtttgttcatag |
34086307 |
T |
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| Q |
217 |
ctgtgcattatctcccatgactttcttcatcaaaaagatattgttctatgctatctct |
274 |
Q |
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| T |
34086308 |
ctgtgcattatctcccatgac-ttcttcatcaaaaagatattgttctatgctatctct |
34086364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 160 - 274
Target Start/End: Complemental strand, 13818875 - 13818762
Alignment:
| Q |
160 |
ctgagaaaattgatgcataatggccctggccttggcaacaggaccgtttgttcatagctgtgcattatctcccatgactttcttcatcaaaaagatattg |
259 |
Q |
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| T |
13818875 |
ctgagaaaattgatgcataatggcactggccttggcaacaagaccgtttattcatagttatgcattatctccagtggc-ttcttcatcaaaaaggtattg |
13818777 |
T |
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| Q |
260 |
ttctatgctatctct |
274 |
Q |
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| T |
13818776 |
ttctatgctatctct |
13818762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 39077027 - 39077114
Alignment:
| Q |
50 |
atctctattttactcctttggtttgaggactagataagaaggatgtgtttgtgattcgagtggagcaggtttcaatttgtcattggaaaaa |
140 |
Q |
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||||||||| ||| ||| || ||||||||||| ||||| ||||||||||||||| ||| |||||||||||| || ||| |||| ||||| |
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| T |
39077027 |
atctctattctacccctctgttttgaggactatataag---gatgtgtttgtgatttgagcggagcaggtttccatctgtgattgaaaaaa |
39077114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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