View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3572_high_16 (Length: 283)
Name: NF3572_high_16
Description: NF3572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3572_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 52443430 - 52443671
Alignment:
| Q |
20 |
gatgtcttcgatcaaagtgacatatttgcgaaatcttggtatttaaaaatggagggtatcaacacagtgaagagattatgtgtaacaagtaatggttatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
52443430 |
gatgtcttcgatcaaagtgacatatttgcgaaatcttggtatttaaaaatggagggtatcaacatagtgaagagattatgtgtaacaagtaatggtgatt |
52443529 |
T |
|
| Q |
120 |
caattgtttagccaacaaaagcactagatctattgcatggagttcaacaatggcttgcccaaagataatcggggaagcaaggggatgaatgtagaagtcg |
219 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
52443530 |
caattgtttagccaacaaaagcacttgatctattgcatggagttcaacaatggcttgcccaaagataatcggggaagcaaggggataaatgtataagtcg |
52443629 |
T |
|
| Q |
220 |
tattatggggttcgatcataaggtggtattgtgggattgcta |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
52443630 |
tattatggggttcgatcataaggtggtattatgggattgcta |
52443671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 37304387 - 37304434
Alignment:
| Q |
111 |
atggttattcaattgtttagccaacaaaagcactagatctattgcatg |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||| ||||||||| |
|
|
| T |
37304387 |
atggttattcaattgtttagccaacaaaagcccttgatgtattgcatg |
37304434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 12300083 - 12299995
Alignment:
| Q |
24 |
tcttcgatcaaagtgacatatttgcgaaatcttggtatttaaaaatggagggtatcaacacagtgaagagattatgtgtaacaagtaat |
112 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||| ||| || ||| ||| |||||||||| |||||| | | ||||||||||||||| |
|
|
| T |
12300083 |
tcttggatcaaagtgacatatttgtaaaactttggtgtttgaacatgcaggatatcaacacaatgaagaaaatctgtgtaacaagtaat |
12299995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 35798042 - 35797954
Alignment:
| Q |
20 |
gatgtcttcgatcaaagtgacatatttgcgaaatcttggtatttaaaaatggagggtatcaacacagtgaagagattatgtgtaacaag |
108 |
Q |
| |
|
||||| || ||||| |||| |||||||| ||||||||||| ||| || || ||| |||||||| | |||||||| |||||| |||||| |
|
|
| T |
35798042 |
gatgttttggatcagagtgtcatatttgtgaaatcttggtgtttgaacttgtaggatatcaacataatgaagagaatatgtgcaacaag |
35797954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University