View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3572_high_17 (Length: 275)

Name: NF3572_high_17
Description: NF3572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3572_high_17
NF3572_high_17
[»] chr6 (50 HSPs)
chr6 (23-260)||(12164079-12164316)
chr6 (23-260)||(12163824-12164058)
chr6 (23-260)||(12210867-12211101)
chr6 (155-260)||(12210741-12210846)
chr6 (173-260)||(12163716-12163803)
chr6 (24-124)||(12211171-12211271)
chr6 (23-123)||(12211272-12211372)
chr6 (32-124)||(12212797-12212889)
chr6 (155-241)||(12163638-12163724)
chr6 (23-120)||(12192338-12192435)
chr6 (155-241)||(12163479-12163565)
chr6 (26-124)||(12212842-12212940)
chr6 (23-124)||(12211122-12211220)
chr6 (155-241)||(12163290-12163376)
chr6 (26-124)||(12211224-12211322)
chr6 (23-120)||(12179257-12179354)
chr6 (23-124)||(12179308-12179409)
chr6 (23-124)||(12192389-12192490)
chr6 (44-124)||(12192308-12192388)
chr6 (59-124)||(12210852-12210917)
chr6 (59-124)||(12179395-12179460)
chr6 (59-124)||(12192476-12192541)
chr6 (173-255)||(12163209-12163291)
chr6 (173-243)||(12163557-12163627)
chr6 (59-117)||(12163809-12163867)
chr6 (158-240)||(12164313-12164395)
chr6 (23-124)||(12179203-12179307)
chr6 (59-124)||(12164064-12164129)
chr6 (128-255)||(12163353-12163480)
chr6 (65-124)||(12164358-12164417)
chr6 (23-102)||(12179116-12179198)
chr6 (122-241)||(12163476-12163595)
chr6 (62-117)||(12211110-12211165)
chr6 (62-124)||(12179104-12179166)
chr6 (23-73)||(12192491-12192541)
chr6 (179-228)||(12163344-12163393)
chr6 (168-240)||(12179156-12179231)
chr6 (62-123)||(12192254-12192315)
chr6 (158-207)||(12211098-12211147)
chr6 (68-124)||(12179197-12179253)
chr6 (173-241)||(12210699-12210767)
chr6 (59-102)||(12163233-12163276)
chr6 (59-102)||(12163332-12163375)
chr6 (23-73)||(12164367-12164417)
chr6 (23-73)||(12179410-12179460)
chr6 (62-102)||(12163305-12163345)
chr6 (166-222)||(12163679-12163735)
chr6 (23-51)||(12164337-12164365)
chr6 (167-207)||(12192323-12192363)
chr6 (165-217)||(12210850-12210902)


Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 50)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 23 - 260
Target Start/End: Original strand, 12164079 - 12164316
Alignment:
Q  23 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccac 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12164079 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagtctcctcctccacccgtcaattcaccacctccac 12164178  T
Q  123 catataagtacaaatctccaccacctcctccttataagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagta 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12164179 catataagtacaaatctccaccacctcctccttataagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagta 12164278  T
Q  223 caaatctccaccaccaccacccaagaaaccatacaagt 260  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12164279 caaatctccaccaccaccacccaagaaaccatacaagt 12164316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 260
Target Start/End: Original strand, 12163824 - 12164058
Alignment:
Q  23 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccac 122  Q
    |||||||| |||||||| || ||||||||||| |||||||||||   ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12163824 gtttacaagtataagtctccccctccacctgtctactcaccacc---accagtttacaagtataagtctcctcctccacctgtctattcaccacctccac 12163920  T
Q  123 catataagtacaaatctccaccacctcctccttataagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagta 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||    
T  12163921 catataagtacaaatctccaccacctcctccttataagtacccatcaccaccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagta 12164020  T
Q  223 caaatctccaccaccaccacccaagaaaccatacaagt 260  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12164021 caaatctccaccaccaccacccaagaaaccatacaagt 12164058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 260
Target Start/End: Original strand, 12210867 - 12211101
Alignment:
Q  23 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccac 122  Q
    |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||    
T  12210867 gtttacaagtataagtctcctcctccacctgtttactcaccacctccaccagtttacaagtataaatctcctcctccaccagtttactcaccacctccac 12210966  T
Q  123 catataagtacaaatctccaccacctcctccttataagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagta 222  Q
    |||| |||||   |||||||||||||||||| || |||||| ||||||||||||| ||||| |||||||| || ||||||||||||||   |||||||||    
T  12210967 catacaagtattcatctccaccacctcctccgtacaagtactcatcaccaccaccaccagtctacaagtataagtcacctcctcctcc---ttacaagta 12211063  T
Q  223 caaatctccaccaccaccacccaagaaaccatacaagt 260  Q
    |  |||||| || ||||| || ||||||||||||||||    
T  12211064 ctcatctccccctccacctccaaagaaaccatacaagt 12211101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 12210741 - 12210846
Alignment:
Q  155 tataagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatctccaccaccaccacccaagaaaccat 254  Q
    |||||||| | ||| || ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  12210741 tataagtatcaatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatctccacccccaccacccaagaaaccat 12210840  T
Q  255 acaagt 260  Q
    ||||||    
T  12210841 acaagt 12210846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 12163716 - 12163803
Alignment:
Q  173 ccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatctccaccaccaccacccaagaaaccatacaagt 260  Q
    ||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12163716 ccaccaccagtttacaagtataagtcacctcctcccccagtttacaagtacaaatctccaccaccaccacccaagaaaccatacaagt 12163803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 12211171 - 12211271
Alignment:
Q  24 tttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccacc 123  Q
    ||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| || || |||||||| ||||| ||||||||||||||    
T  12211171 tttacaagtataagtcacctcctccacctgtctactcaccacctccaccagtctacaagtataaatcaccccctccacctgtctactcaccacctccacc 12211270  T
Q  124 a 124  Q
    |    
T  12211271 a 12211271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 12211272 - 12211372
Alignment:
Q  23 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccac 122  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||    
T  12211272 gtttacaaatataagtcacctcccccacctgtctactcaccaccaccaccagtttacaaatataagtcacctcccccacctgtctactcaccacctccac 12211371  T
Q  123 c 123  Q
    |    
T  12211372 c 12211372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 12212797 - 12212889
Alignment:
Q  32 tataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccacca 124  Q
    |||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  12212797 tataagtcacctcccccacctgtctactcaccacctccaccagtatacaagtataagtctcctcccccacctgtctactcaccacctccacca 12212889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 12163638 - 12163724
Alignment:
Q  155 tataagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatctccaccaccacca 241  Q
    ||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  12163638 tataaatacccatctcccccaccaccagtttacaagtacaaatcacctcctcctccagtttacaagtataaatctcctccaccacca 12163724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 12192338 - 12192435
Alignment:
Q  23 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctcc 120  Q
    |||||||| || ||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||    
T  12192338 gtttacaagtacaagtcaccccctccacctgtctactcaccacctccaccagtttacaagtacaagtccccacctccacccgtctactcaccacctcc 12192435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 12163479 - 12163565
Alignment:
Q  155 tataagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatctccaccaccacca 241  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||| || || || ||||||||||||||||| |||||||||    
T  12163479 tataaatacccatctccaccaccgccagtttacaagtacaaatcacctccaccaccggtgtacaagtacaaatctcctccaccacca 12163565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 12212842 - 12212940
Alignment:
Q  26 tacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccacca 124  Q
    ||||| |||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| || |  |||||||||||||||    
T  12212842 tacaagtataagtctcctcccccacctgtctactcaccacctccaccagtatacaagtataagtcccctcctccacctgtttcctcaccacctccacca 12212940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 12211122 - 12211220
Alignment:
Q  23 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccac 122  Q
    |||||||| ||||| || |||||||||||||| |||||||||||   |||| |||||||||||||||| ||||||||||| ||||| |||||||||||||    
T  12211122 gtttacaagtataaatctcctcctccacctgtctactcaccacc---accaatttacaagtataagtcacctcctccacctgtctactcaccacctccac 12211218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 241
Target Start/End: Original strand, 12163290 - 12163376
Alignment:
Q  155 tataagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatctccaccaccacca 241  Q
    ||||| || ||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||||    
T  12163290 tataaatatccatctccaccaccaccagtttacaagtacaagtcacctcctccaccagtttacaagtataaatctcctccaccacca 12163376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 12211224 - 12211322
Alignment:
Q  26 tacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccacca 124  Q
    ||||| ||||| || || ||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||| ||||||    
T  12211224 tacaagtataaatcaccccctccacctgtctactcaccacctccaccagtttacaaatataagtcacctcccccacctgtctactcaccaccaccacca 12211322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 12179257 - 12179354
Alignment:
Q  23 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctcc 120  Q
    |||||||| || |||||||| | |||||| || |||||||||||||||||||||||||| || ||||| || |||||||||||||| |||||||||||    
T  12179257 gtttacaagtacaagtccccacgtccacccgtttactcaccacctccaccagtttacaactacaagtccccacctccacccgtctactcaccacctcc 12179354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 12179308 - 12179409
Alignment:
Q  23 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccac 122  Q
    |||||||| || |||||||| |||||||| || |||||||||||||| || ||||||| ||| ||||| || ||||| ||||||||||||||||||||||    
T  12179308 gtttacaactacaagtccccacctccacccgtctactcaccacctcccccggtttacacgtacaagtcaccacctcctcccgtctattcaccacctccac 12179407  T
Q  123 ca 124  Q
    ||    
T  12179408 ca 12179409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 12192389 - 12192490
Alignment:
Q  23 gtttacaaatataagtcccctcctccacctgtatactcaccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccac 122  Q
    |||||||| || |||||||| |||||||| || |||||||||||||| || ||||| ||||| ||||| || ||||| ||||||||||||||||||||||    
T  12192389 gtttacaagtacaagtccccacctccacccgtctactcaccacctcccccggtttataagtacaagtcaccacctcctcccgtctattcaccacctccac 12192488  T
Q  123 ca 124  Q
    ||    
T  12192489 ca 12192490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 12192308 - 12192388
Alignment:
Q  44 cctccacctgtatactcaccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccacca 124  Q
    ||||||||||| ||||||||||| ||||||||||||||||| ||||| || |||||||| ||||| |||||||||||||||    
T  12192308 cctccacctgtctactcaccaccaccaccagtttacaagtacaagtcaccccctccacctgtctactcaccacctccacca 12192388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 12210852 - 12210917
Alignment:
Q  59 tcaccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccacca 124  Q
    |||||||| ||||||||||||||||||||||||||||||||||| || || |||||||||||||||    
T  12210852 tcaccaccaccaccagtttacaagtataagtctcctcctccacctgtttactcaccacctccacca 12210917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 12179395 - 12179460
Alignment:
Q  59 tcaccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccacca 124  Q
    ||||||||||||||||||||||||||||||||||||||||| || |  || |||||||||||||||    
T  12179395 tcaccacctccaccagtttacaagtataagtctcctcctcctcctgcttactcaccacctccacca 12179460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 12192476 - 12192541
Alignment:
Q  59 tcaccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccacca 124  Q
    ||||||||||||||||||||||||||||||||||||||||| || |  || |||||||||||||||    
T  12192476 tcaccacctccaccagtttacaagtataagtctcctcctcctcctgcatactcaccacctccacca 12192541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 12163209 - 12163291
Alignment:
Q  173 ccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatctccaccaccaccacccaagaaaccata 255  Q
    ||||| ||||||||||||||||||||||||||||| ||||| || ||||| || ||||| || |||||||| ||||| |||||    
T  12163209 ccacctccagtttacaagtacaaatcacctcctccaccagtgtataagtataagtctcctcctccaccaccgaagaagccata 12163291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 12163557 - 12163627
Alignment:
Q  173 ccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatctccaccaccaccacc 243  Q
    ||||| |||||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| |||||||||||    
T  12163557 ccaccaccagtttacaagtataaatcccctcctccaccagtgtacaagtacaagtctcctccaccaccacc 12163627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 12163809 - 12163867
Alignment:
Q  59 tcaccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacc 117  Q
    |||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||||    
T  12163809 tcaccaccaccaccagtttacaagtataagtctccccctccacctgtctactcaccacc 12163867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 12164313 - 12164395
Alignment:
Q  158 aagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatctccaccaccacc 240  Q
    |||||||||||||||||||| || |||||||| || || || |||||||| |||||||||||||| |||||||| || |||||    
T  12164313 aagtacccatcaccaccaccacccgtttacaaatataagtcccctcctccaccagtttacaagtataaatctcctcctccacc 12164395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 12179203 - 12179307
Alignment:
Q  23 gtttacaaatataagtcccctcctccacctgtatactcaccacctccac---cagtttacaagtataagtctcctcctccacccgtctattcaccacctc 119  Q
    |||||||| || |||||||| |||||||| || ||||||||||| ||||   ||||||||||||| ||||| || | ||||||||| || ||||||||||    
T  12179203 gtttacaagtacaagtccccacctccacccgtgtactcaccaccaccaccaccagtttacaagtacaagtccccacgtccacccgtttactcaccacctc 12179302  T
Q  120 cacca 124  Q
    |||||    
T  12179303 cacca 12179307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 12164064 - 12164129
Alignment:
Q  59 tcaccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccacca 124  Q
    |||||||| |||||||||||||| |||||||| ||||||||||| || || |||||||||||||||    
T  12164064 tcaccaccaccaccagtttacaaatataagtcccctcctccacctgtatactcaccacctccacca 12164129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 255
Target Start/End: Original strand, 12163353 - 12163480
Alignment:
Q  128 aagtacaaatctccaccacctcctccttataagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaat 227  Q
    ||||| |||||||| ||||| ||   ||| ||||||  |||||| || || || || |||||||| ||||| |||||||| ||||| ||||||||||| |    
T  12163353 aagtataaatctcctccaccaccagtttacaagtacaaatcacctcctccaccggtgtacaagtataaatcccctcctccaccagtgtacaagtacaagt 12163452  T
Q  228 ctccaccaccaccacccaagaaaccata 255  Q
    |||| ||||||||||| ||||| |||||    
T  12163453 ctcctccaccaccacctaagaagccata 12163480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 12164358 - 12164417
Alignment:
Q  65 cctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccacca 124  Q
    ||||||||||||||||||||||| |||||||||||||| ||  | |||||||||||||||    
T  12164358 cctccaccagtttacaagtataaatctcctcctccacctgttcactcaccacctccacca 12164417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 12179116 - 12179198
Alignment:
Q  23 gtttacaaatataagtcccctcctccacctgtatact---caccacctccaccagtttacaagtataagtctcctcctccacc 102  Q
    ||||||||||| |||||||| |||||||| || ||||   ||||||| ||||||||||||||||| ||||| || ||||||||    
T  12179116 gtttacaaatacaagtccccacctccacccgtctactcaccaccaccaccaccagtttacaagtacaagtccccacctccacc 12179198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 12163476 - 12163595
Alignment:
Q  122 ccatataagtacaaatctccaccacctcctccttataagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagt 221  Q
    |||||||| |||  |||||||||||| ||   ||| ||||||  |||||| ||||| || || |||||||||||||| ||||| || |||||||||||||    
T  12163476 ccatataaatacccatctccaccaccgccagtttacaagtacaaatcacctccaccaccggtgtacaagtacaaatctcctccaccaccagtttacaagt 12163575  T
Q  222 acaaatctccaccaccacca 241  Q
    | ||||| || || ||||||    
T  12163576 ataaatcccctcctccacca 12163595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 12211110 - 12211165
Alignment:
Q  62 ccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacc 117  Q
    ||||| || ||||||||||||||||| |||||||||||||| ||||| ||||||||    
T  12211110 ccaccacccccagtttacaagtataaatctcctcctccacctgtctactcaccacc 12211165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 12179104 - 12179166
Alignment:
Q  62 ccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccacca 124  Q
    ||||| |||||||||||||| || ||||| || |||||||||||||| |||||||| ||||||    
T  12179104 ccaccaccaccagtttacaaatacaagtccccacctccacccgtctactcaccaccaccacca 12179166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 12192491 - 12192541
Alignment:
Q  23 gtttacaaatataagtcccctcctccacctgtatactcaccacctccacca 73  Q
    |||||||| |||||||| |||||||| |||| |||||||||||||||||||    
T  12192491 gtttacaagtataagtctcctcctcctcctgcatactcaccacctccacca 12192541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 12163344 - 12163393
Alignment:
Q  179 ccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatc 228  Q
    |||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  12163344 ccagtttacaagtataaatctcctccaccaccagtttacaagtacaaatc 12163393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 12179156 - 12179231
Alignment:
Q  168 caccaccaccgccagtttacaagtacaaat---cacctcctcctccagtttacaagtacaaatctccaccaccacc 240  Q
    |||||||||| ||||||||||||||||| |   ||||||| || ||||||||||||||||| || ||||| |||||    
T  12179156 caccaccaccaccagtttacaagtacaagtccccacctccaccaccagtttacaagtacaagtccccacctccacc 12179231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 12192254 - 12192315
Alignment:
Q  62 ccacctccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccacc 123  Q
    ||||| |||||||||||||||||||| || || || ||||| ||||| ||||||||||||||    
T  12192254 ccaccaccaccagtttacaagtataaatcaccacccccacctgtctactcaccacctccacc 12192315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 12211098 - 12211147
Alignment:
Q  158 aagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcc 207  Q
    ||||||||||| |||||||| |||||||||||||| ||||| ||||||||    
T  12211098 aagtacccatctccaccacccccagtttacaagtataaatctcctcctcc 12211147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 12179197 - 12179253
Alignment:
Q  68 ccaccagtttacaagtataagtctcctcctccacccgtctattcaccacctccacca 124  Q
    ||||||||||||||||| ||||| || ||||||||||| || |||||||| ||||||    
T  12179197 ccaccagtttacaagtacaagtccccacctccacccgtgtactcaccaccaccacca 12179253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 12210699 - 12210767
Alignment:
Q  173 ccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatctccaccaccacca 241  Q
    ||||| ||||| ||||||||||||||||||||||| || || || |||||  ||||||| |||||||||    
T  12210699 ccaccaccagtatacaagtacaaatcacctcctccaccggtatataagtatcaatctcccccaccacca 12210767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 12163233 - 12163276
Alignment:
Q  59 tcaccacctccaccagtttacaagtataagtctcctcctccacc 102  Q
    ||||| ||||||||||| || |||||||||||||||||||||||    
T  12163233 tcacctcctccaccagtgtataagtataagtctcctcctccacc 12163276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 12163332 - 12163375
Alignment:
Q  59 tcaccacctccaccagtttacaagtataagtctcctcctccacc 102  Q
    ||||| ||||||||||||||||||||||| |||||||| |||||    
T  12163332 tcacctcctccaccagtttacaagtataaatctcctccaccacc 12163375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 12164367 - 12164417
Alignment:
Q  23 gtttacaaatataagtcccctcctccacctgtatactcaccacctccacca 73  Q
    |||||||| ||||| || ||||||||||||||  |||||||||||||||||    
T  12164367 gtttacaagtataaatctcctcctccacctgttcactcaccacctccacca 12164417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 12179410 - 12179460
Alignment:
Q  23 gtttacaaatataagtcccctcctccacctgtatactcaccacctccacca 73  Q
    |||||||| |||||||| |||||||| ||||  ||||||||||||||||||    
T  12179410 gtttacaagtataagtctcctcctcctcctgcttactcaccacctccacca 12179460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 12163305 - 12163345
Alignment:
Q  62 ccacctccaccagtttacaagtataagtctcctcctccacc 102  Q
    ||||| ||||||||||||||||| ||||| |||||||||||    
T  12163305 ccaccaccaccagtttacaagtacaagtcacctcctccacc 12163345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 12163679 - 12163735
Alignment:
Q  166 atcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagta 222  Q
    |||||| || || |||||||||||||| ||||| ||||| || ||||||||||||||    
T  12163679 atcacctcctcctccagtttacaagtataaatctcctccaccaccagtttacaagta 12163735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 12164337 - 12164365
Alignment:
Q  23 gtttacaaatataagtcccctcctccacc 51  Q
    |||||||||||||||||||||||||||||    
T  12164337 gtttacaaatataagtcccctcctccacc 12164365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 12192323 - 12192363
Alignment:
Q  167 tcaccaccaccgccagtttacaagtacaaatcacctcctcc 207  Q
    ||||||||||| ||||||||||||||||| ||||| |||||    
T  12192323 tcaccaccaccaccagtttacaagtacaagtcaccccctcc 12192363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 12210850 - 12210902
Alignment:
Q  165 catcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttac 217  Q
    ||||||||||||| |||||||||||||| || || |||||||| || ||||||    
T  12210850 catcaccaccaccaccagtttacaagtataagtctcctcctccacctgtttac 12210902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University