View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3572_high_2 (Length: 547)
Name: NF3572_high_2
Description: NF3572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3572_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 62 - 352
Target Start/End: Original strand, 32157709 - 32157999
Alignment:
| Q |
62 |
actgttgtaggaacagagttcaagcaattccaccgactatgtgcttgtttgcttaaccgcgtaatcatcgtattttttaatgaaaaagaattgtcaaaat |
161 |
Q |
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| T |
32157709 |
actgttgtaggaacagagttcaagcaattccaccgaccatgtgcttgtttgcttaaccgcgtaatcatcgtattttttaatgaaaaagaattgtcaaaat |
32157808 |
T |
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| Q |
162 |
aggtacgtattctggtggagcagttgtttctctactcaagatgacatcaccaatagtccacaatgttctatttcatttcatggctatgtattttgaaatt |
261 |
Q |
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| T |
32157809 |
aggtacgtattctggtggagcagttgtttctctactcaagatgacatcaccaatagtccacaatgttctatttcatttcatggctatgtattttgaaatt |
32157908 |
T |
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| Q |
262 |
tagtacatctttggattgaggtgagtttgtcaagatgatggtcgtattgtattgtcattcttttgaagtgtatgtttgatttgggggtgtt |
352 |
Q |
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| T |
32157909 |
tagtacatctttggattgaggtgagtttgtcgagatgatggtcgtattgtattgtcattcttttgaagtgtatgtttgatttgggggtgtt |
32157999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 395 - 537
Target Start/End: Original strand, 32158042 - 32158184
Alignment:
| Q |
395 |
tattttttattgagttgagctacgtcgctcttttaagacttttgtggtactgtttaacattgtgcaactagacaatcaatcatgacgtccacatgataaa |
494 |
Q |
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| T |
32158042 |
tattttttattgagttgagctaaatcgctcttttaagacttttgtggtactgtttaacattgtgcaactagacaatcaatcatgacgtccacatgataaa |
32158141 |
T |
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| Q |
495 |
acaacttgactacaactgcatcgaagtcctactatactctgtg |
537 |
Q |
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| T |
32158142 |
acaacttgactacaactgcatcgaagtcctactatactctgtg |
32158184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 450 - 535
Target Start/End: Complemental strand, 23489565 - 23489480
Alignment:
| Q |
450 |
aacattgtgcaactagacaatcaatcatgacgtccacatgataaaacaacttgactacaactgcatcgaagtcctactatactctg |
535 |
Q |
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|||||| ||||| |||||||||||||| ||||||| || |||||||||||| |||||||||| || ||||||||||| ||||||| |
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| T |
23489565 |
aacattatgcaagtagacaatcaatcacgacgtcctcaagataaaacaactcaactacaactgtattgaagtcctactgtactctg |
23489480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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