View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3572_high_20 (Length: 243)
Name: NF3572_high_20
Description: NF3572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3572_high_20 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 20478751 - 20478975
Alignment:
| Q |
19 |
tttcgcaccaagttcttcgtatttcttcggattcttaaggaagtgcacaaactccataacttcttgctttgcctcatcacagccagcaacatctttaaaa |
118 |
Q |
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| T |
20478751 |
tttcgcaccaagttcttcgtatttcttcggattcttaaggaagtgcacaaactccataacttcttgctttgcctcatcacagccagcaacatctttaaaa |
20478850 |
T |
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| Q |
119 |
tagaccttgttttcggcatctttgtcgactttagtaacatgttgttttccaattccattattactgacagctccaaaaatcatcaggattccagataata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20478851 |
tagaccttgttttcggcatctttgtcgactttagtaacatgttgttttccaattccattattactgacagctccaaaaatcatcaggattccagataata |
20478950 |
T |
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| Q |
219 |
agataaacaatgagaacaaccagtc |
243 |
Q |
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||||||||||||||||||||||||| |
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| T |
20478951 |
agataaacaatgagaacaaccagtc |
20478975 |
T |
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Target: scaffold0376 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 2708 - 2606
Alignment:
| Q |
23 |
gcaccaagttcttcgtatttcttcggattcttaaggaagtgcacaaactccataacttcttgctttgcctcatcacagccagcaacatctttaaaataga |
122 |
Q |
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|||||||| ||||| |||||||| |||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2708 |
gcaccaagctcttcatatttcttaggattcttgaagaagtgcacaaactccataatctcttgctttgcctcatcacagccagcaacatctttaaaataga |
2609 |
T |
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| Q |
123 |
cct |
125 |
Q |
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||| |
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| T |
2608 |
cct |
2606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 29728179 - 29728080
Alignment:
| Q |
26 |
ccaagttcttcgtatttcttcggattcttaaggaagtgcacaaactccataacttcttgctttgcctcatcacagccagcaacatctttaaaatagacct |
125 |
Q |
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| T |
29728179 |
ccaagctcttggaatttcttgggattcttgaggaaacgcacaaactccataacttcttgctttgcctcatcacagccagcaacatctttaaaatagacct |
29728080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 125
Target Start/End: Original strand, 38514236 - 38514338
Alignment:
| Q |
23 |
gcaccaagttcttcgtatttcttcggattcttaaggaagtgcacaaactccataacttcttgctttgcctcatcacagccagcaacatctttaaaataga |
122 |
Q |
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|||||||| |||| ||||||||| ||| |||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
38514236 |
gcaccaagctcttggtatttcttaggactcttgaggaagtgcacaaactccataatttcttgttttgcctcatcacagccagcaacatctttaaaatata |
38514335 |
T |
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| Q |
123 |
cct |
125 |
Q |
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||| |
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| T |
38514336 |
cct |
38514338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 38514489 - 38514535
Alignment:
| Q |
122 |
accttgttttcggcatctttgtcgactttagtaacatgttgttttcc |
168 |
Q |
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| T |
38514489 |
accttgtttttggcatctttgtctactttagtaaaatgtggttttcc |
38514535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 24003779 - 24003677
Alignment:
| Q |
23 |
gcaccaagttcttcgtatttcttcggattcttaaggaagtgcacaaactccataacttcttgctttgcctcatcacagccagcaacatctttaaaataga |
122 |
Q |
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|||||||| |||||||||||||| |||||||| || ||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||| | |
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| T |
24003779 |
gcaccaagctcttcgtatttcttaggattcttgagaaagtgcacaaactccataatttcttgctttgcctcctcacacccagcaacatctttaaaataaa |
24003680 |
T |
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| Q |
123 |
cct |
125 |
Q |
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||| |
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| T |
24003679 |
cct |
24003677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 16837712 - 16837613
Alignment:
| Q |
26 |
ccaagttcttcgtatttcttcggattcttaaggaagtgcacaaactccataacttcttgctttgcctcatcacagccagcaacatctttaaaatagacct |
125 |
Q |
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| T |
16837712 |
ccaagctcttggaatttcttgggattcttgaggaaacgcacaaactccataaattcttgctttgcctgagcacagccagcaacatctttaaaatagacct |
16837613 |
T |
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