View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3572_low_10 (Length: 336)

Name: NF3572_low_10
Description: NF3572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3572_low_10
NF3572_low_10
[»] chr3 (7 HSPs)
chr3 (9-332)||(47426414-47426737)
chr3 (135-185)||(50434097-50434147)
chr3 (300-335)||(31187145-31187180)
chr3 (250-332)||(44380318-44380400)
chr3 (300-336)||(35094608-35094644)
chr3 (300-331)||(34029366-34029397)
chr3 (300-335)||(42664734-42664769)
[»] chr4 (10 HSPs)
chr4 (261-336)||(21260854-21260929)
chr4 (262-336)||(33249411-33249485)
chr4 (250-336)||(35869596-35869682)
chr4 (300-335)||(52012839-52012874)
chr4 (250-336)||(12473764-12473850)
chr4 (250-336)||(12528173-12528259)
chr4 (300-335)||(9799438-9799473)
chr4 (300-330)||(33174581-33174611)
chr4 (262-332)||(22343401-22343471)
chr4 (250-336)||(51811974-51812060)
[»] chr5 (9 HSPs)
chr5 (250-336)||(33858563-33858649)
chr5 (261-336)||(39570079-39570154)
chr5 (250-336)||(11607559-11607645)
chr5 (250-336)||(42148206-42148292)
chr5 (300-335)||(29990023-29990058)
chr5 (300-335)||(13015442-13015477)
chr5 (300-335)||(37881202-37881237)
chr5 (300-336)||(9827848-9827884)
chr5 (300-336)||(19357336-19357372)
[»] chr2 (5 HSPs)
chr2 (250-336)||(23863828-23863914)
chr2 (250-336)||(34392106-34392192)
chr2 (250-336)||(41095811-41095897)
chr2 (300-336)||(21604019-21604055)
chr2 (300-336)||(7381752-7381788)
[»] chr8 (5 HSPs)
chr8 (251-336)||(4708333-4708418)
chr8 (250-336)||(24337855-24337941)
chr8 (250-336)||(11254053-11254139)
chr8 (250-336)||(41179588-41179674)
chr8 (300-335)||(1514864-1514899)
[»] chr7 (4 HSPs)
chr7 (250-336)||(35341596-35341682)
chr7 (250-332)||(48072451-48072533)
chr7 (303-336)||(31306951-31306984)
chr7 (250-332)||(32694595-32694677)
[»] scaffold0519 (1 HSPs)
scaffold0519 (250-336)||(11254-11340)
[»] chr1 (7 HSPs)
chr1 (250-336)||(32676196-32676282)
chr1 (300-335)||(8809715-8809750)
chr1 (250-329)||(29119349-29119428)
chr1 (304-336)||(3688917-3688949)
chr1 (250-336)||(8462188-8462274)
chr1 (303-332)||(25161373-25161402)
chr1 (303-335)||(8555490-8555522)
[»] chr6 (2 HSPs)
chr6 (250-336)||(5403901-5403987)
chr6 (250-332)||(1211869-1211951)
[»] scaffold0263 (1 HSPs)
scaffold0263 (300-336)||(23174-23210)


Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 9 - 332
Target Start/End: Complemental strand, 47426737 - 47426414
Alignment:
Q  9 acatcatcaggaagttggtgacatcaacattggtgtatgaaggattgttttgtggagcatctcatcaatgctatctagacctccatttgtaaaacacatg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47426737 acatcatcaggaagttggtgacatcaacattggtgtatgaaggattgttttgtggagcatctcatcaatgctatcttgacctccatttgtaaaacacatg 47426638  T
Q  109 aaaataaaatcctgaaattcccaggttgtttacagaagtgcacaagaaacaaagtggcaaatgaagtcatagagcttgctagctagctagggtctcaatc 208  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47426637 aaaataaaatcctgaaatt-ccaggttgtttacagaagtgcacaagaaacaaagtggcaaatgaagtcatagagcttgctagctagctagggtctcaatc 47426539  T
Q  209 c-aaataatttccagtcagcatgtaaacggatagcacgtgtgtataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaa 307  Q
    | |||||||||||||||||| ||| |||||||||||| |||||||||||||| ||||||||||| | |||||||||||||| |||       ||||||||    
T  47426538 caaaataatttccagtcagcttgtgaacggatagcacttgtgtataccattgcccaattagaatgtaccatgtggcacaccctttaaaaaaatatatcaa 47426439  T
Q  308 ataaaacatttataaagtaacattg 332  Q
    ||||| ||| |||||||||||||||    
T  47426438 ataaagcatctataaagtaacattg 47426414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 50434147 - 50434097
Alignment:
Q  135 tgtttacagaagtgcacaagaaacaaagtggcaaatgaagtcatagagctt 185  Q
    |||||| |||||||||||||||||| ||| |||||||||||||||||||||    
T  50434147 tgtttaaagaagtgcacaagaaacagagtagcaaatgaagtcatagagctt 50434097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 335
Target Start/End: Original strand, 31187145 - 31187180
Alignment:
Q  300 tatatcaaataaaacatttataaagtaacattggta 335  Q
    ||||||||||||||||||||||||||||||||||||    
T  31187145 tatatcaaataaaacatttataaagtaacattggta 31187180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 44380400 - 44380318
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattg 332  Q
    |||||||||| ||||||||||| || || |||||||||| |||       ||||||||||||| |||||||||||||| ||||    
T  44380400 tataccattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaagcatttataaagtaatattg 44380318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 336
Target Start/End: Complemental strand, 35094644 - 35094608
Alignment:
Q  300 tatatcaaataaaacatttataaagtaacattggtag 336  Q
    |||||||||||||| ||||||||||||||||||||||    
T  35094644 tatatcaaataaaatatttataaagtaacattggtag 35094608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 300 - 331
Target Start/End: Original strand, 34029366 - 34029397
Alignment:
Q  300 tatatcaaataaaacatttataaagtaacatt 331  Q
    ||||||||||||||||||||||||||||||||    
T  34029366 tatatcaaataaaacatttataaagtaacatt 34029397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 42664769 - 42664734
Alignment:
Q  300 tatatcaaataaaacatttataaagtaacattggta 335  Q
    |||||||||||||||||||||||| |||||||||||    
T  42664769 tatatcaaataaaacatttataaaataacattggta 42664734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 261 - 336
Target Start/End: Complemental strand, 21260929 - 21260854
Alignment:
Q  261 ccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    ||||||||||| |||||||||||||||| |||       |||||||||||||||||||||||||||||||||||||    
T  21260929 ccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtag 21260854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 336
Target Start/End: Original strand, 33249411 - 33249485
Alignment:
Q  262 caattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    |||||||| | |||||||||||||||| |||       ||||||||||||| |||||||||||||||||||||||    
T  33249411 caattagattgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataaagtaacattggtag 33249485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 35869596 - 35869682
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    ||||||||||  |||||||||| || || |||||||||| |||       |||||||||||||||||||||| ||||||||||||||    
T  35869596 tataccattgttcaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttatatagtaacattggtag 35869682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 52012874 - 52012839
Alignment:
Q  300 tatatcaaataaaacatttataaagtaacattggta 335  Q
    ||||||||||||||||||||||||||||||||||||    
T  52012874 tatatcaaataaaacatttataaagtaacattggta 52012839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 336
Target Start/End: Complemental strand, 12473850 - 12473764
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    ||||||||||  |||||||||| || |||||| |||||| |||       ||||||||||||| ||| |||||||||||||||||||    
T  12473850 tataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataaagtaacattggtag 12473764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 336
Target Start/End: Complemental strand, 12528259 - 12528173
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    ||||||||||  |||||||||| || |||||| |||||| |||       ||||||||||||| ||| |||||||||||||||||||    
T  12528259 tataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataaagtaacattggtag 12528173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 300 - 335
Target Start/End: Original strand, 9799438 - 9799473
Alignment:
Q  300 tatatcaaataaaacatttataaagtaacattggta 335  Q
    ||||| ||||||||||||||||||||||||||||||    
T  9799438 tatattaaataaaacatttataaagtaacattggta 9799473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 330
Target Start/End: Complemental strand, 33174611 - 33174581
Alignment:
Q  300 tatatcaaataaaacatttataaagtaacat 330  Q
    |||||||||||||||||||||||||||||||    
T  33174611 tatatcaaataaaacatttataaagtaacat 33174581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 332
Target Start/End: Complemental strand, 22343471 - 22343401
Alignment:
Q  262 caattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattg 332  Q
    |||||||||| || ||||||||||| | |||       ||||||||||||| |||||||||||||||||||    
T  22343471 caattagaatgtgtcatgtggcacatcctttaaaataatatatcaaataaagcatttataaagtaacattg 22343401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 336
Target Start/End: Complemental strand, 51812060 - 51811974
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    |||||||||  ||||||||||| || ||  ||||||||| |||       ||||||||| |||| ||||||||||||||||||||||    
T  51812060 tataccattatccaattagaatgtgtcacatggcacaccctttaaaaaaatatatcaaaaaaaaaatttataaagtaacattggtag 51811974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 33858563 - 33858649
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    |||||||||| ||||||||||| || || |||||||||| |||       |||||||||||||||||||||||||||||||||||||    
T  33858563 tataccattgcccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaacattggtag 33858649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 336
Target Start/End: Original strand, 39570079 - 39570154
Alignment:
Q  261 ccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    |||||||||||||| || |||||||||| |||       |||||||||||||||||||||||||||||||||||||    
T  39570079 ccaattagaatatgtcaggtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaacattggtag 39570154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 11607559 - 11607645
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    |||||||||| ||||||||||| || |  |||||||||| |||       |||||||||||||||||||||||||||| ||||||||    
T  11607559 tataccattgtccaattagaatgtggcccgtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaatattggtag 11607645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 336
Target Start/End: Complemental strand, 42148292 - 42148206
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    ||||||||||  |||||||||| ||| | |||| ||||| |||       |||||||||||||||||||||||||||||||||||||    
T  42148292 tataccattgttcaattagaatgtgcaacgtggtacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtag 42148206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 29990058 - 29990023
Alignment:
Q  300 tatatcaaataaaacatttataaagtaacattggta 335  Q
    ||||||||||||||||||||||||||||||||||||    
T  29990058 tatatcaaataaaacatttataaagtaacattggta 29990023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 13015477 - 13015442
Alignment:
Q  300 tatatcaaataaaacatttataaagtaacattggta 335  Q
    |||||||||||||| |||||||||||||||||||||    
T  13015477 tatatcaaataaaatatttataaagtaacattggta 13015442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 37881237 - 37881202
Alignment:
Q  300 tatatcaaataaaacatttataaagtaacattggta 335  Q
    |||||||||||||| |||||||||||||||||||||    
T  37881237 tatatcaaataaaatatttataaagtaacattggta 37881202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Complemental strand, 9827884 - 9827848
Alignment:
Q  300 tatatcaaataaaacatttataaagtaacattggtag 336  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  9827884 tatatcaaataaaatatttataaagtaatattggtag 9827848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 19357336 - 19357372
Alignment:
Q  300 tatatcaaataaaacatttataaagtaacattggtag 336  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  19357336 tatatcaaataaagcatttataaagtaatattggtag 19357372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 23863828 - 23863914
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    |||| ||||| ||||||||||| |||||||||||||||| |||       ||||||||||||| |||||||||||||||||||||||    
T  23863828 tatatcattgtccaattagaatgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataaagtaacattggtag 23863914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 34392106 - 34392192
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    |||||||||| ||||||||| | |||||||||||||||| |||       ||||||||||||| |||||||||||||| ||||||||    
T  34392106 tataccattgtccaattagattgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatttataaagtaagattggtag 34392192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 41095811 - 41095897
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    |||||||||||||| ||||  | |||||||||||| |||||||       | ||||||||||| |||||||||||||||||||||||    
T  41095811 tataccattggccatttagggtgtgccatgtggcataccttttaaaaaaatctatcaaataaagcatttataaagtaacattggtag 41095897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 300 - 336
Target Start/End: Complemental strand, 21604055 - 21604019
Alignment:
Q  300 tatatcaaataaaacatttataaagtaacattggtag 336  Q
    |||||||||||||||||||||||||||||||||||||    
T  21604055 tatatcaaataaaacatttataaagtaacattggtag 21604019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Complemental strand, 7381788 - 7381752
Alignment:
Q  300 tatatcaaataaaacatttataaagtaacattggtag 336  Q
    |||||||||||||  ||||||||||||||||||||||    
T  7381788 tatatcaaataaagaatttataaagtaacattggtag 7381752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 336
Target Start/End: Original strand, 4708333 - 4708418
Alignment:
Q  251 ataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    ||||||||| | ||||||||| ||||| |||||||||| |||       |||||||||||||||||||||||||||||||||||||    
T  4708333 ataccattgcctaattagaatgtgccacgtggcacaccctttaaaaatatatatcaaataaaacatttataaagtaacattggtag 4708418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 24337855 - 24337941
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    |||||||||| ||||||||||| ||| |||||||||||| |||       ||||||||||||| ||| |||||||||||||||||||    
T  24337855 tataccattgtccaattagaatgtgctatgtggcacaccctttaaaaatatatatcaaataaagcatctataaagtaacattggtag 24337941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 11254053 - 11254139
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    ||||||||||  || ||||||| || || |||||||||| |||       |||||||||||||||||||||||||||||||||||||    
T  11254053 tataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataaagtaacattggtag 11254139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 41179588 - 41179674
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    |||||||||| ||||||||||| |||||||||||||| |  ||       ||||| ||||||||||||||||||||||||| |||||    
T  41179588 tataccattgcccaattagaatgtgccatgtggcacatccattaaaaaaatatattaaataaaacatttataaagtaacatcggtag 41179674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 1514899 - 1514864
Alignment:
Q  300 tatatcaaataaaacatttataaagtaacattggta 335  Q
    ||||||||||||||||||||||||||||||||||||    
T  1514899 tatatcaaataaaacatttataaagtaacattggta 1514864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 336
Target Start/End: Complemental strand, 35341682 - 35341596
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    |||| ||||| ||||||||||| || || |||||||||| |||       |||||||||||||||||||||||||||||||||||||    
T  35341682 tatatcattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaacattggtag 35341596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 48072533 - 48072451
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattg 332  Q
    |||||||||| ||||||||||| ||||| |||||||||| |||       || ||||||||||| ||||||||| ||||||||    
T  48072533 tataccattgcccaattagaatgtgccacgtggcacaccctttaaaaaaatacatcaaataaaatatttataaaataacattg 48072451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 336
Target Start/End: Original strand, 31306951 - 31306984
Alignment:
Q  303 atcaaataaaacatttataaagtaacattggtag 336  Q
    |||||||||| |||||||||||||||||||||||    
T  31306951 atcaaataaagcatttataaagtaacattggtag 31306984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 32694595 - 32694677
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattg 332  Q
    |||||||||| | ||||||||| || || |||||||||| |||       |||||||||||||  ||||||||||||||||||    
T  32694595 tataccattgcctaattagaatgtgtcacgtggcacaccctttaaaaaaatatatcaaataaagaatttataaagtaacattg 32694677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 336
Target Start/End: Complemental strand, 11340 - 11254
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    ||||||||||  || ||||||| || || |||||||||| |||       |||||||||||||||||||||||||||||||||||||    
T  11340 tataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataaagtaacattggtag 11254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 336
Target Start/End: Complemental strand, 32676282 - 32676196
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    |||||||||| ||||||||| | ||||||||||||||   |||       ||||||||||||| |||||||||||||||||||||||    
T  32676282 tataccattgtccaattagattgtgccatgtggcacatgctttaaaaaaatatatcaaataaagcatttataaagtaacattggtag 32676196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 335
Target Start/End: Original strand, 8809715 - 8809750
Alignment:
Q  300 tatatcaaataaaacatttataaagtaacattggta 335  Q
    ||||||||||||||||||||||||||||||||||||    
T  8809715 tatatcaaataaaacatttataaagtaacattggta 8809750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 329
Target Start/End: Original strand, 29119349 - 29119428
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaaca 329  Q
    ||||| |||| ||||||||||| |||||||||||||||| |||       ||||||||||||| ||| ||||||||||||    
T  29119349 tatacaattgcccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaagtaaca 29119428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 336
Target Start/End: Original strand, 3688917 - 3688949
Alignment:
Q  304 tcaaataaaacatttataaagtaacattggtag 336  Q
    |||||||||||||||||||||||||||||||||    
T  3688917 tcaaataaaacatttataaagtaacattggtag 3688949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 336
Target Start/End: Complemental strand, 8462274 - 8462188
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    |||||||||| ||||||| ||| || || ||||||| || |||       ||||| |||||||||||||||||| ||||||||||||    
T  8462274 tataccattgtccaattaaaatgtgtcacgtggcacgccctttaaaaaagtatattaaataaaacatttataaaataacattggtag 8462188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 332
Target Start/End: Complemental strand, 25161402 - 25161373
Alignment:
Q  303 atcaaataaaacatttataaagtaacattg 332  Q
    ||||||||||||||||||||||||||||||    
T  25161402 atcaaataaaacatttataaagtaacattg 25161373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 335
Target Start/End: Complemental strand, 8555522 - 8555490
Alignment:
Q  303 atcaaataaaacatttataaagtaacattggta 335  Q
    ||||||||||||||||||||| |||||||||||    
T  8555522 atcaaataaaacatttataaaataacattggta 8555490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 336
Target Start/End: Original strand, 5403901 - 5403987
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattggtag 336  Q
    |||||||||| ||||||||||| || ||||||  || || |||       ||||||||||||||||| |||||||||||||||||||    
T  5403901 tataccattgtccaattagaatgtgtcatgtgatacgccctttaaaaaaatatatcaaataaaacatctataaagtaacattggtag 5403987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 1211869 - 1211951
Alignment:
Q  250 tataccattggccaattagaatatgccatgtggcacaccttttnnnnnnntatatcaaataaaacatttataaagtaacattg 332  Q
    |||||||||| || |||||||| ||||| |||||||||| |||       ||||||||||||| |||  ||||||||||||||    
T  1211869 tataccattgccccattagaatgtgccacgtggcacaccctttaaaaaaatatatcaaataaagcatcgataaagtaacattg 1211951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 23174 - 23210
Alignment:
Q  300 tatatcaaataaaacatttataaagtaacattggtag 336  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  23174 tatatcaaataaaatatttataaagtaaaattggtag 23210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University