View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3572_low_16 (Length: 290)
Name: NF3572_low_16
Description: NF3572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3572_low_16 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 29 - 290
Target Start/End: Complemental strand, 20479407 - 20479146
Alignment:
| Q |
29 |
aagaagggtcaaactctagcacagaggatgaagatggtgttggtaggaagttttcaagaagcattcaagnnnnnnnngaatggaaagaagggtcaagaac |
128 |
Q |
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| T |
20479407 |
aagaagggtcaaagtctagcacagaggatgaagatggtgtttgtaggaagttttcaagaagcattcaagaaaaaaaagaatggaaagaagggtcaagaac |
20479308 |
T |
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| Q |
129 |
gaaagcggaatcaatttgaattcggcattcgattgttgtcactgatagtttcatacctttattttcatcttttcaagaggaagaaggaggttagctttga |
228 |
Q |
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| T |
20479307 |
gaaagcggaatcaatttgaattcggcattcgattgttgtcactgatagtttcatacctttattttcatcttttcaagaggaagaaggaggttagctttga |
20479208 |
T |
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| Q |
229 |
ggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctccaacaaac |
290 |
Q |
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| T |
20479207 |
ggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctccaacaaac |
20479146 |
T |
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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 24003047 - 24003108
Alignment:
| Q |
228 |
aggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctccaacaaa |
289 |
Q |
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| T |
24003047 |
aggagtttaaaaataagcttttggaaccaggattagtagaccatattgttgtctccaacaaa |
24003108 |
T |
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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 208 - 289
Target Start/End: Original strand, 29727565 - 29727646
Alignment:
| Q |
208 |
gaagaaggaggttagctttgaggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctccaacaaa |
289 |
Q |
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| T |
29727565 |
gaagcaggagattagctttcaggagtttaagattaaggttttggaacctggcttagtagaccatattgttgtctccaacaaa |
29727646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 38515005 - 38514942
Alignment:
| Q |
219 |
ttagctttgaggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctc |
282 |
Q |
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| T |
38515005 |
ttagctttcaggagtttgtgaataagcttttggaaccaggattggtagatcatattgttgtctc |
38514942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 16837143 - 16837219
Alignment:
| Q |
213 |
aggaggttagctttgaggagtttaggaataagcttttggaaccaggattagttgaccatattgttgtctccaacaaa |
289 |
Q |
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||||| |||||||| ||||||||| || |||| |||||||||| || ||||| ||||||||||||||||| |||||| |
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| T |
16837143 |
aggagattagctttcaggagtttaagattaaggttttggaacctggcttagtagaccatattgttgtctctaacaaa |
16837219 |
T |
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