View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3572_low_20 (Length: 261)
Name: NF3572_low_20
Description: NF3572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3572_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 151 - 251
Target Start/End: Complemental strand, 31428563 - 31428463
Alignment:
| Q |
151 |
ctgtcaaaattttaaataatggtggcatacatgttagaatcaatcaatcaatctttaattaattttatctttgtgtataaatatgcattcagaattctgt |
250 |
Q |
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| T |
31428563 |
ctgtcaaaattttaaataatggtggcatacatgttagaatcaatcaatcaatctttaattaattttatctttgtgtataaatatgcattcagaattctgt |
31428464 |
T |
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| Q |
251 |
g |
251 |
Q |
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| T |
31428463 |
g |
31428463 |
T |
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Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 31428651 - 31428564
Alignment:
| Q |
17 |
agttctaagcactgaaacaggcaattagttaaggaggaataaattctaaatccctaatgatccataaagtaaacttatctaaaatttg |
104 |
Q |
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| T |
31428651 |
agttctaagcactgaaacaggcaattagttaaggaggaataaattctaaatccctaatgatccataaagtaaacttatctaaaatttg |
31428564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 31452709 - 31452490
Alignment:
| Q |
25 |
gcactgaaacaggcaattagttaaggaggaataaattctaaatccctaatgatccataaagtaaacttatctaaaatttggtgaatcataccct------ |
118 |
Q |
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| T |
31452709 |
gcactgaaacaagcaa--agttcagaaggaataaattctaactcc----tgatccataaagtaaacttatctaaaatttggtgaatcaaactctcatcat |
31452616 |
T |
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| Q |
119 |
-----agaaagaatgcgaatgcatgcatgttgtttttctgtcaaaatttta-aataatggtggcatacatgttagaatcaatcaatcaatctttaattaa |
212 |
Q |
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| T |
31452615 |
atcatagaaagaatgcgaat-catgcatgttgtttg-ctgtcaaaattttataataatggtgggatacatgtgagaataaatcaat-attctctaattga |
31452519 |
T |
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| Q |
213 |
ttttatctttgtgtataaatatgcattca |
241 |
Q |
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| T |
31452518 |
ttgaatctttgtgtataaataggcattca |
31452490 |
T |
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