View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3572_low_22 (Length: 240)
Name: NF3572_low_22
Description: NF3572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3572_low_22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 42467830 - 42468052
Alignment:
| Q |
18 |
gtattgattatgaaaagtgaatgaatgaatacaagtgatacaattacaagtatttatagacttttctaactgtttgggaatcgaatttcctccgcacaac |
117 |
Q |
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| T |
42467830 |
gtattgattatgaaaagtgaattaatgaatacaagtgatacaattacaagtatttatagacttttctaactgtttgggaatcgaatttcctccacacaac |
42467929 |
T |
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| Q |
118 |
cttcatataataaagtaattttgtctcattattttgtttttcttttgaatcagtaaagttggttaaatcatggcatcttattcttatagcgagttttcta |
217 |
Q |
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| T |
42467930 |
cttcatataataaagtaattttgtctcattattttgtttttcttttgaatcagtaaagttggttaaatcatggcatcttattcttatagcgagttttcta |
42468029 |
T |
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| Q |
218 |
tcagtaaatgttgaatcttttat |
240 |
Q |
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| T |
42468030 |
tcagtaaatgttgaatcttttat |
42468052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 49100222 - 49100111
Alignment:
| Q |
87 |
ctgtttgggaatcgaatttcctccgcacaaccttcatataataaagtaattttgtctcattattttgtttttcttttgaatcagtaaagttggttaaatc |
186 |
Q |
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| T |
49100222 |
ctgtttgggaattgattttgctccccacaaccatcaaataataaagcaatttagtctcattattttgttttccttttgaatcactaaagttggttaaatc |
49100123 |
T |
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| Q |
187 |
atggcatcttat |
198 |
Q |
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| T |
49100122 |
atggcatcttat |
49100111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 1351753 - 1351820
Alignment:
| Q |
19 |
tattgattatgaaaagtgaatgaatgaatacaagtgatacaattacaagtatttatagacttttctaa |
86 |
Q |
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||||||||||||||| |||||||||||||||| | |||||||||||||||||||| |||||||||||| |
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| T |
1351753 |
tattgattatgaaaactgaatgaatgaatacatgggatacaattacaagtatttaaagacttttctaa |
1351820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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