View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3572_low_24 (Length: 239)
Name: NF3572_low_24
Description: NF3572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3572_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40809426 - 40809206
Alignment:
| Q |
1 |
cgattgtttcgttgaagcggtttgagtttgaagtggttttgaaaacgattgagaagtttagggttacgagattatggattgtgccaccgattgtactcgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40809426 |
cgattgtttcgttgaagcggtttgagtttgaagtggttttgaaaacgattgagaagtttagggttacgagattatggattgtgccaccgattgtactcgc |
40809327 |
T |
|
| Q |
101 |
tctagcgaaacatggtttggttgataagtatgatctttcgagtttgaagtatattggttctggtgctgctcctcttgggaaagagttgatggaagagtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40809326 |
tctagcgaaacatggtttggttgataagtatgatctttcgagtttgaagtatattggttctggtgctgctcctcttgggaaagagttgatggaagagtgt |
40809227 |
T |
|
| Q |
201 |
gctaagcgctttcctcatgct |
221 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
40809226 |
gctaagcgttttcctcatgct |
40809206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 203
Target Start/End: Original strand, 21243064 - 21243220
Alignment:
| Q |
47 |
gattgagaagtttagggttacgagattatggattgtgccaccgattgtactcgctctagcgaaacatggtttggttgataagtatgatctttcgagtttg |
146 |
Q |
| |
|
||||||||||| || || |||| || ||| ||||||||||||| | || ||| |||||||||| || |||||| || |||||| |||| |||| |
|
|
| T |
21243064 |
gattgagaagtataaagtgacgaacttgtgggttgtgccaccgatgattcttgctttagcgaaacagagtgtggttgggaaatatgatgtttcttctttg |
21243163 |
T |
|
| Q |
147 |
aagtatattggttctggtgctgctcctcttgggaaagagttgatggaagagtgtgct |
203 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
21243164 |
aagagtattgggtctggtgctgctcctcttgggaaggaattgatggaagagtgtgct |
21243220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University