View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3572_low_25 (Length: 237)

Name: NF3572_low_25
Description: NF3572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3572_low_25
NF3572_low_25
[»] chr3 (18 HSPs)
chr3 (138-222)||(47426222-47426306)
chr3 (10-86)||(11512393-11512469)
chr3 (10-79)||(31342020-31342089)
chr3 (10-86)||(22893975-22894051)
chr3 (10-64)||(20286932-20286986)
chr3 (12-84)||(36738269-36738341)
chr3 (11-78)||(20496553-20496619)
chr3 (39-86)||(29081704-29081751)
chr3 (39-86)||(28695423-28695470)
chr3 (23-66)||(29081625-29081668)
chr3 (39-86)||(48342793-48342840)
chr3 (40-86)||(20496489-20496535)
chr3 (43-81)||(32385369-32385407)
chr3 (24-65)||(16205736-16205777)
chr3 (12-65)||(48342243-48342296)
chr3 (12-65)||(48342865-48342918)
chr3 (28-68)||(17546997-17547037)
chr3 (45-81)||(36738372-36738408)
[»] chr7 (12 HSPs)
chr7 (10-86)||(17272705-17272781)
chr7 (13-86)||(7211866-7211939)
chr7 (10-78)||(7211974-7212042)
chr7 (12-80)||(25099327-25099395)
chr7 (21-81)||(29681776-29681836)
chr7 (10-80)||(46282880-46282951)
chr7 (39-80)||(32315719-32315760)
chr7 (25-75)||(32315790-32315840)
chr7 (25-65)||(6980948-6980988)
chr7 (25-65)||(42494799-42494839)
chr7 (13-86)||(4911698-4911771)
chr7 (12-65)||(43500011-43500064)
[»] chr1 (16 HSPs)
chr1 (10-86)||(50754730-50754806)
chr1 (10-86)||(28739389-28739465)
chr1 (10-68)||(9379842-9379900)
chr1 (10-68)||(9884865-9884923)
chr1 (10-64)||(15928150-15928204)
chr1 (10-86)||(28045325-28045400)
chr1 (10-68)||(6539635-6539693)
chr1 (39-86)||(10449454-10449501)
chr1 (39-86)||(44801758-44801805)
chr1 (31-68)||(4579192-4579229)
chr1 (39-76)||(28810065-28810102)
chr1 (25-81)||(44291059-44291115)
chr1 (12-47)||(41526193-41526228)
chr1 (39-86)||(44938801-44938848)
chr1 (12-65)||(10449526-10449579)
chr1 (12-65)||(44938872-44938925)
[»] chr6 (10 HSPs)
chr6 (12-86)||(2543821-2543895)
chr6 (13-80)||(369498-369565)
chr6 (12-86)||(11448063-11448137)
chr6 (25-84)||(2980786-2980845)
chr6 (39-86)||(16193834-16193881)
chr6 (41-79)||(28581745-28581783)
chr6 (25-66)||(178660-178701)
chr6 (15-80)||(35049750-35049816)
chr6 (12-65)||(16193757-16193810)
chr6 (10-66)||(1879187-1879243)
[»] chr2 (9 HSPs)
chr2 (10-96)||(7755332-7755418)
chr2 (10-68)||(39819087-39819145)
chr2 (21-81)||(15562215-15562275)
chr2 (10-68)||(12918557-12918615)
chr2 (17-86)||(13421772-13421841)
chr2 (12-86)||(34563326-34563400)
chr2 (25-65)||(18182591-18182631)
chr2 (16-68)||(30610238-30610290)
chr2 (39-68)||(5095818-5095847)
[»] chr5 (16 HSPs)
chr5 (12-79)||(9177923-9177990)
chr5 (10-64)||(1839999-1840053)
chr5 (12-81)||(23219360-23219429)
chr5 (16-68)||(29385367-29385419)
chr5 (10-86)||(5215645-5215722)
chr5 (23-77)||(42772054-42772108)
chr5 (39-86)||(12605660-12605707)
chr5 (10-68)||(19417469-19417527)
chr5 (12-68)||(7137665-7137721)
chr5 (35-79)||(25879406-25879450)
chr5 (12-63)||(36568733-36568785)
chr5 (11-86)||(896275-896350)
chr5 (10-73)||(31848177-31848239)
chr5 (13-65)||(12605582-12605634)
chr5 (39-79)||(22097488-22097528)
chr5 (49-81)||(41287997-41288029)
[»] chr4 (18 HSPs)
chr4 (10-68)||(31846867-31846925)
chr4 (10-66)||(6607471-6607527)
chr4 (35-86)||(53261096-53261147)
chr4 (12-67)||(31012152-31012207)
chr4 (16-79)||(54223566-54223629)
chr4 (26-79)||(38324924-38324977)
chr4 (15-66)||(6608375-6608426)
chr4 (39-81)||(30023650-30023692)
chr4 (11-68)||(43063542-43063599)
chr4 (12-86)||(11392307-11392379)
chr4 (40-86)||(30023489-30023535)
chr4 (25-66)||(9712943-9712984)
chr4 (25-65)||(22435379-22435419)
chr4 (43-86)||(6607402-6607444)
chr4 (43-86)||(33380609-33380652)
chr4 (15-78)||(41306689-41306752)
chr4 (20-64)||(2254564-2254608)
chr4 (58-86)||(31012259-31012287)
[»] chr8 (8 HSPs)
chr8 (10-66)||(43465112-43465168)
chr8 (35-80)||(45051339-45051384)
chr8 (12-65)||(31470771-31470824)
chr8 (39-87)||(4531848-4531896)
chr8 (45-81)||(33763469-33763505)
chr8 (15-65)||(7931605-7931655)
chr8 (15-65)||(33763539-33763589)
chr8 (39-68)||(31470849-31470878)
[»] scaffold0343 (1 HSPs)
scaffold0343 (12-65)||(12285-12338)
[»] scaffold1315 (1 HSPs)
scaffold1315 (39-86)||(1819-1866)
[»] scaffold1293 (1 HSPs)
scaffold1293 (39-86)||(205-252)
[»] scaffold0110 (1 HSPs)
scaffold0110 (39-86)||(26506-26553)
[»] scaffold0001 (1 HSPs)
scaffold0001 (10-68)||(507740-507798)


Alignment Details
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 47426306 - 47426222
Alignment:
Q  138 aagaaaaactaaattttatttgttgtgtctatattaattattcgtctctacacatgacacgcccttcaaacacactgctaaaagt 222  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  47426306 aagaaaaactaaattttatttgttgtgtctatattaactattcgtctctacacatgacacgcccttcaaacacactgctaaaagt 47426222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 11512469 - 11512393
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11512469 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagt 11512393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 31342089 - 31342020
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtca 79  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31342089 tcttgtgaaagaaaaagaagaaagctacatgtgacattgtggttggccaatgtcaccaaccacaatgtca 31342020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 22893975 - 22894051
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  22893975 tcttgttaaagaaaaagaagaaagtcacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcacccaagt 22894051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 20286986 - 20286932
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtca 64  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20286986 tcttgtaaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtca 20286932  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 36738341 - 36738269
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaa 84  Q
    |||||||| | ||||||||||| ||| ||||| |||||||||| ||||| |||||||||||||  ||||||||    
T  36738341 ttgtgaaaaagaaagaagaaagacacttgtgatattgtggttgaccaatatcaccaaccacaacatcacctaa 36738269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 20496553 - 20496619
Alignment:
Q  11 cttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtc 78  Q
    ||||||||||| | ||||||||| ||| ||||||||||||||| | ||||||||||||||||| ||||    
T  20496553 cttgtgaaagagagagaagaaagtcacgtgtgacattgtggtt-gacaatgtcaccaaccacattgtc 20496619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 29081704 - 29081751
Alignment:
Q  39 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    |||||||||||||||| |||||||||||||||||||| ||||| ||||    
T  29081704 tgtgacattgtggttgaccaatgtcaccaaccacaatatcacccaagt 29081751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 28695423 - 28695470
Alignment:
Q  39 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    |||||||||||| ||| ||||||||||||| |||| ||||||||||||    
T  28695423 tgtgacattgtgattgtccaatgtcaccaatcacactgtcacctaagt 28695470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 29081668 - 29081625
Alignment:
Q  23 aaagaagaaagccacatgtgacattgtggttggccaatgtcacc 66  Q
    |||||||||||| || ||||||||||||||||| ||||||||||    
T  29081668 aaagaagaaagctacttgtgacattgtggttggtcaatgtcacc 29081625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 48342840 - 48342793
Alignment:
Q  39 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    |||||||||||||||| |||||||| ||||||| ||||||||| ||||    
T  48342840 tgtgacattgtggttgaccaatgtcgccaaccataatgtcacccaagt 48342793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 20496535 - 20496489
Alignment:
Q  40 gtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    ||||||||||| |||| |||||||||| |||||||||||||| ||||    
T  20496535 gtgacattgtgattggtcaatgtcaccgaccacaatgtcaccaaagt 20496489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 32385407 - 32385369
Alignment:
Q  43 acattgtggttggccaatgtcaccaaccacaatgtcacc 81  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  32385407 acattgtggttgaccaatgtcaccaatcacaatgtcacc 32385369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 16205777 - 16205736
Alignment:
Q  24 aagaagaaagccacatgtgacattgtggttggccaatgtcac 65  Q
    |||||||||||||| ||||||||||||||||  |||||||||    
T  16205777 aagaagaaagccacttgtgacattgtggttgatcaatgtcac 16205736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 48342296 - 48342243
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcac 65  Q
    |||| ||||| || |||||||| |||||||| ||||||||||||| ||||||||    
T  48342296 ttgtaaaagagaatgaagaaagacacatgtggcattgtggttggctaatgtcac 48342243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 48342865 - 48342918
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcac 65  Q
    |||| ||||| || |||||||| ||||||||||||||| |||||| ||||||||    
T  48342865 ttgtaaaagagaatgaagaaagacacatgtgacattgtcgttggctaatgtcac 48342918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 17547037 - 17546997
Alignment:
Q  28 agaaagccacatgtgacattgtggttggccaatgtcaccaa 68  Q
    |||||||||| ||||||||| |||||||||||| |||||||    
T  17547037 agaaagccacttgtgacattatggttggccaatatcaccaa 17546997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 36738372 - 36738408
Alignment:
Q  45 attgtggttggccaatgtcaccaaccacaatgtcacc 81  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  36738372 attgtagttgaccaatgtcaccaaccacaatgtcacc 36738408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 17272781 - 17272705
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17272781 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagt 17272705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 7211939 - 7211866
Alignment:
Q  13 tgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7211939 tgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagt 7211866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 7211974 - 7212042
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtc 78  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||    
T  7211974 tcttgtgaaagaaaaagaagaaagtcacatgtgacattgtggttggccaatgtctcccaccacaatgtc 7212042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 25099327 - 25099395
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcac 80  Q
    |||||||||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||||| ||||    
T  25099327 ttgtgaaagaaaaagaagaaagacacttgtgacattgtggttgaccaaagtcaccaaccacaatttcac 25099395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 29681836 - 29681776
Alignment:
Q  21 aaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacc 81  Q
    ||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29681836 aaaaaaaaaaaagccacatgtgacgttgtggttggccaatgtcaccaaccacaatgtcacc 29681776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 46282951 - 46282880
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaag-ccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcac 80  Q
    |||||||||||| ||||||||||  |||| ||||| ||||||||||||||||||||||||| ||||||||||    
T  46282951 tcttgtgaaagagaaagaagaaaaaccacttgtgatattgtggttggccaatgtcaccaactacaatgtcac 46282880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 32315760 - 32315719
Alignment:
Q  39 tgtgacattgtggttggccaatgtcaccaaccacaatgtcac 80  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32315760 tgtgacattgtggttggccaatgtcaccaaccacaatgtcac 32315719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 32315790 - 32315840
Alignment:
Q  25 agaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaat 75  Q
    ||||||||||||| | ||||||||| |||| ||||||||||||||||||||    
T  32315790 agaagaaagccacttctgacattgtagttgaccaatgtcaccaaccacaat 32315840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 6980948 - 6980988
Alignment:
Q  25 agaagaaagccacatgtgacattgtggttggccaatgtcac 65  Q
    ||||||||||||| ||| |||||||||||||||||||||||    
T  6980948 agaagaaagccacttgtaacattgtggttggccaatgtcac 6980988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 42494839 - 42494799
Alignment:
Q  25 agaagaaagccacatgtgacattgtggttggccaatgtcac 65  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  42494839 agaagaaagccacttgtgacattgtggtttgccaatgtcac 42494799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 4911698 - 4911771
Alignment:
Q  13 tgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    ||||||||| ||||||||||  ||| ||||||||| | |||| ||||| ||||| | |||||||||||| ||||    
T  4911698 tgtgaaagagaaagaagaaattcacctgtgacattatagttgaccaatatcaccgatcacaatgtcacccaagt 4911771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 43500064 - 43500011
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcac 65  Q
    |||||||||||||||||||| | || ||||||||||||| ||| ||||| ||||    
T  43500064 ttgtgaaagaaaaagaagaatgtcatatgtgacattgtgattgaccaatatcac 43500011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 50754806 - 50754730
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50754806 tcttgtaaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcaccaaagt 50754730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 28739389 - 28739465
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28739389 tcttgtaaaagaaaaagaaaaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagt 28739465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 9379900 - 9379842
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9379900 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatatcaccaa 9379842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 9884923 - 9884865
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9884923 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttgaccaatgtcaccaa 9884865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 15928150 - 15928204
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtca 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15928150 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtca 15928204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 28045400 - 28045325
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    |||||| ||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||| ||||    
T  28045400 tcttgttaaagaaaaagaagaaagccacttgtgacattatggttggccaat-tcaccaaccacaatgtcacccaagt 28045325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 6539635 - 6539693
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 68  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  6539635 tcttgtgaaagaaaaagaagaaagtcacatgtgacattgtggttgaccaatgtcaccaa 6539693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 10449501 - 10449454
Alignment:
Q  39 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  10449501 tgtgacattgtggttggtcaatgtcaccaaccacaatgtcacccaagt 10449454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 44801805 - 44801758
Alignment:
Q  39 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||    
T  44801805 tgtgacattgtggttggccaatgtcatcaaccacaatatcacctaagt 44801758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 4579229 - 4579192
Alignment:
Q  31 aagccacatgtgacattgtggttggccaatgtcaccaa 68  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  4579229 aagccacttgtgacattgtggttggccaatgtcaccaa 4579192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 28810065 - 28810102
Alignment:
Q  39 tgtgacattgtggttggccaatgtcaccaaccacaatg 76  Q
    |||||||||||||||| |||||||||||||||||||||    
T  28810065 tgtgacattgtggttgaccaatgtcaccaaccacaatg 28810102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 44291115 - 44291059
Alignment:
Q  25 agaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacc 81  Q
    ||||||||| || |||||| ||||||||||| || |||||||||||||| |||||||    
T  44291115 agaagaaagtcatatgtgatattgtggttggtcagtgtcaccaaccacattgtcacc 44291059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 41526228 - 41526193
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgacatt 47  Q
    ||||||||||||||||||||||| ||||||||||||    
T  41526228 ttgtgaaagaaaaagaagaaagcaacatgtgacatt 41526193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 44938848 - 44938801
Alignment:
Q  39 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||| ||||    
T  44938848 tgtgacattctggttggtcaatgtcactaaccacaatgtcacccaagt 44938801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 10449526 - 10449579
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcac 65  Q
    |||||||||| |||||||||||  |  |||||||||||||||| ||||||||||    
T  10449526 ttgtgaaagagaaagaagaaagatatttgtgacattgtggttgaccaatgtcac 10449579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 44938872 - 44938925
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcac 65  Q
    |||||||||| ||||||||||||||| |||  |||||||||||  |||||||||    
T  44938872 ttgtgaaagagaaagaagaaagccacttgtaccattgtggttgttcaatgtcac 44938925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 2543821 - 2543895
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2543821 ttgtgaaagaaaaaaaaaaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagt 2543895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 369498 - 369565
Alignment:
Q  13 tgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcac 80  Q
    ||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  369498 tgtgaaagagaaagaagaaagacacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcac 369565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 11448137 - 11448063
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    ||||||||||||||||| ||||| |||| | |||||||||||||||||| | |||||||||||||||||| ||||    
T  11448137 ttgtgaaagaaaaagaaaaaagctacatataacattgtggttggccaatattaccaaccacaatgtcacccaagt 11448063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 2980786 - 2980845
Alignment:
Q  25 agaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaa 84  Q
    ||||||||||||| ||||||||| |||||| ||||| |||||||||||||||||||||||    
T  2980786 agaagaaagccacttgtgacattatggttgaccaatttcaccaaccacaatgtcacctaa 2980845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 16193834 - 16193881
Alignment:
Q  39 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||    
T  16193834 tgtgacattgtggttgaccaatgtcaccaaccacaatgtcacccaagt 16193881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 28581783 - 28581745
Alignment:
Q  41 tgacattgtggttggccaatgtcaccaaccacaatgtca 79  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28581783 tgacattgtggttggccaatgtcaccaaccacaatgtca 28581745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 178701 - 178660
Alignment:
Q  25 agaagaaagccacatgtgacattgtggttggccaatgtcacc 66  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  178701 agaagaaagccacatgtgacattgtggttgatcaatgtcacc 178660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 35049816 - 35049750
Alignment:
Q  15 tgaaagaaaaagaagaaa-gccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcac 80  Q
    |||||||||||||||||| ||||| ||| | ||||||||||| |||  ||||||||| |||||||||    
T  35049816 tgaaagaaaaagaagaaaagccacttgtaatattgtggttggtcaacatcaccaaccgcaatgtcac 35049750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 16193810 - 16193757
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcac 65  Q
    ||||||| || ||||||||||| ||| |||||||||||| ||||||||| ||||    
T  16193810 ttgtgaaggagaaagaagaaagacacttgtgacattgtgattggccaatatcac 16193757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 1879243 - 1879187
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcacc 66  Q
    |||||||||| | | ||||||||| ||| | |||||||||||||| |||||||||||    
T  1879243 tcttgtgaaaaatagagaagaaagtcacttatgacattgtggttgaccaatgtcacc 1879187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 7755418 - 7755332
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagttcaacccgta 96  Q
    |||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||    
T  7755418 tcttgttaaagaaaaagaaaaaagccacttgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagtgctacccgta 7755332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 39819145 - 39819087
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39819145 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 39819087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 15562275 - 15562215
Alignment:
Q  21 aaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacc 81  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  15562275 aaaaagaagaaagtcacatgtgacattgtggttggccaatgtcatcaaccacaatgtcacc 15562215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 12918615 - 12918557
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 68  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12918615 tcttatgaaagaaaaagaaaaaagccacatgtgacattgtggttggccaatgtcaccaa 12918557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 13421772 - 13421841
Alignment:
Q  17 aaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    ||||||||| ||||||| ||||||| || |||||||||| ||||||||||||||||||||||||| ||||    
T  13421772 aaagaaaaaaaagaaagtcacatgtaacgttgtggttggtcaatgtcaccaaccacaatgtcacccaagt 13421841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 34563326 - 34563400
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    ||||||||||||| ||||||||  || ||||||||||  ||||| |||||||||||||||| |||||||| ||||    
T  34563326 ttgtgaaagaaaatgaagaaagatacttgtgacattgaagttggtcaatgtcaccaaccacgatgtcaccaaagt 34563400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 18182591 - 18182631
Alignment:
Q  25 agaagaaagccacatgtgacattgtggttggccaatgtcac 65  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  18182591 agaagaaagccacttgtgacattgtggtttgccaatgtcac 18182631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 30610238 - 30610290
Alignment:
Q  16 gaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 68  Q
    |||||| | |||| |||| ||||||||||||| ||||||||||||||||||||    
T  30610238 gaaagagacagaaaaaagtcacatgtgacattatggttggccaatgtcaccaa 30610290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 5095818 - 5095847
Alignment:
Q  39 tgtgacattgtggttggccaatgtcaccaa 68  Q
    ||||||||||||||||||||||||||||||    
T  5095818 tgtgacattgtggttggccaatgtcaccaa 5095847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 9177923 - 9177990
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtca 79  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||    
T  9177923 ttgtgaaagaaaaagaagaaagtcacatgtgatattgtggttggccaatatcaccaaccacaatgtca 9177990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 1840053 - 1839999
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtca 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1840053 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtca 1839999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 23219360 - 23219429
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacc 81  Q
    |||||||||||||||||||||| || || ||||||||||||||||||| |||||||||||||||||||||    
T  23219360 ttgtgaaagaaaaagaagaaagtcatatatgacattgtggttggccaaggtcaccaaccacaatgtcacc 23219429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 29385367 - 29385419
Alignment:
Q  16 gaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29385367 gaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 29385419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 5215645 - 5215722
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaa-gccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    |||||||||||||||| |||||| ||||||||||| |||||||||| ||||||||| |||||||||||||||| ||||    
T  5215645 tcttgtgaaagaaaaataagaaaagccacatgtgatattgtggttgaccaatgtcatcaaccacaatgtcacccaagt 5215722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 42772054 - 42772108
Alignment:
Q  23 aaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgt 77  Q
    ||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||    
T  42772054 aaagaagaaagacacttgtgacattgtggttggtcaatgtcaccaaccacaatgt 42772108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 12605660 - 12605707
Alignment:
Q  39 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||    
T  12605660 tgtgacattgtggttgaccaatgtcaccaaccacaatgtcacttaagt 12605707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 19417527 - 19417469
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 68  Q
    |||||||||||||||  ||||||| ||||||||||||||| |||| |||||||||||||    
T  19417527 tcttgtgaaagaaaagaaagaaagtcacatgtgacattgtagttgaccaatgtcaccaa 19417469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 7137721 - 7137665
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 68  Q
    |||||||||| || |||||||| ||| ||||||||||||||||| ||||||||||||    
T  7137721 ttgtgaaagagaatgaagaaagtcacttgtgacattgtggttggtcaatgtcaccaa 7137665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 25879406 - 25879450
Alignment:
Q  35 cacatgtgacattgtggttggccaatgtcaccaaccacaatgtca 79  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||    
T  25879406 cacatgtgacattgtggttggctaatatcaccaaccacaatgtca 25879450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 36568785 - 36568733
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgaca-ttgtggttggccaatgtc 63  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  36568785 ttgtgaaagaaaaggaagaaagccacatgtgacatttgtggttgaccaatgtc 36568733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 896350 - 896275
Alignment:
Q  11 cttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    ||||| ||||| |||||||||| || | ||||||||||||||||  |||| |||||||||||||| ||||| ||||    
T  896350 cttgtaaaagagaaagaagaaaaccgcctgtgacattgtggttgatcaatatcaccaaccacaatctcacccaagt 896275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 31848239 - 31848177
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccaca 73  Q
    |||||||||||| | |||||||| |||| |||||| |||||||||| |||| ||||||||||||    
T  31848239 tcttgtgaaagagagagaagaaa-ccacttgtgaccttgtggttggtcaatatcaccaaccaca 31848177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 12605634 - 12605582
Alignment:
Q  13 tgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcac 65  Q
    ||||||||  ||||||||||| ||||||||||||| ||||||  |||||||||    
T  12605634 tgtgaaagtgaaagaagaaagacacatgtgacattatggttgatcaatgtcac 12605582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 22097488 - 22097528
Alignment:
Q  39 tgtgacattgtggttggccaatgtcaccaaccacaatgtca 79  Q
    ||||||||||| |||| |||||||||||||| |||||||||    
T  22097488 tgtgacattgtagttgaccaatgtcaccaactacaatgtca 22097528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 41287997 - 41288029
Alignment:
Q  49 tggttggccaatgtcaccaaccacaatgtcacc 81  Q
    |||||||||||| ||||||||||||||||||||    
T  41287997 tggttggccaatatcaccaaccacaatgtcacc 41288029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 31846867 - 31846925
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31846867 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatatcaccaa 31846925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 6607471 - 6607527
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcacc 66  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  6607471 tcttgtgaaagaaaaagaagaaagccacatgtgacattatggttggtcaatgtcacc 6607527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 53261147 - 53261096
Alignment:
Q  35 cacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  53261147 cacatgtgacattgtggttggtcaatgtcaccaaccacaatgtcacctaagt 53261096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 31012207 - 31012152
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcacca 67  Q
    ||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||    
T  31012207 ttgtgaaagaaaaagaaaaaagtcacatgtgacattgtggttggtcaatgtcacca 31012152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 54223629 - 54223566
Alignment:
Q  16 gaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtca 79  Q
    |||||| ||||||||||| ||  ||||||||||||||||| |||||||||||||||||||||||    
T  54223629 gaaagagaaagaagaaagacatttgtgacattgtggttggtcaatgtcaccaaccacaatgtca 54223566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 38324924 - 38324977
Alignment:
Q  26 gaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtca 79  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||||||||||||    
T  38324924 gaagaaagccacatgtgatattatggttggccaatatcaccaaccacaatgtca 38324977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 6608426 - 6608375
Alignment:
Q  15 tgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcacc 66  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||||||||||||    
T  6608426 tgaaagaaaaagaaggaagccacgtgtgacattatggttggccaatgtcacc 6608375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 30023650 - 30023692
Alignment:
Q  39 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacc 81  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  30023650 tgtgacattgtggttggtcaatgtcaccaaccacaatgtcacc 30023692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 43063599 - 43063542
Alignment:
Q  11 cttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 68  Q
    |||||||||||||  || ||||||||| |||||||||||||||||| |||||||||||    
T  43063599 cttgtgaaagaaagtgatgaaagccacttgtgacattgtggttggctaatgtcaccaa 43063542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 11392379 - 11392307
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    |||||||||| | |||||||||||   |||||||||||||| ||||||| ||| |||||||||||||||| ||||    
T  11392379 ttgtgaaagagagagaagaaagcct--tgtgacattgtggtaggccaatttcatcaaccacaatgtcacccaagt 11392307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 30023535 - 30023489
Alignment:
Q  40 gtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    |||||||| |||||| |||||||||||||||||||| ||||||||||    
T  30023535 gtgacattatggttgaccaatgtcaccaaccacaatatcacctaagt 30023489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 9712943 - 9712984
Alignment:
Q  25 agaagaaagccacatgtgacattgtggttggccaatgtcacc 66  Q
    ||||||||||||| ||||||||||||||||| ||||||||||    
T  9712943 agaagaaagccacttgtgacattgtggttggtcaatgtcacc 9712984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 22435419 - 22435379
Alignment:
Q  25 agaagaaagccacatgtgacattgtggttggccaatgtcac 65  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  22435419 agaagaaagccacttgtgacattgtggtttgccaatgtcac 22435379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 6607444 - 6607402
Alignment:
Q  43 acattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    |||||||||||||  |||||||||||||||||||||||||||||    
T  6607444 acattgtggttggt-aatgtcaccaaccacaatgtcacctaagt 6607402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 33380652 - 33380609
Alignment:
Q  43 acattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    |||||||||||| ||||| |||||||||||||||||| ||||||    
T  33380652 acattgtggttgaccaatatcaccaaccacaatgtcatctaagt 33380609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 41306689 - 41306752
Alignment:
Q  15 tgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaaccacaatgtc 78  Q
    ||||||||| ||||||||  ||  ||||||||| ||||||| |||| |||||||||||||||||    
T  41306689 tgaaagaaagagaagaaatacatttgtgacattatggttggtcaatatcaccaaccacaatgtc 41306752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 2254608 - 2254564
Alignment:
Q  20 gaaaaagaagaaagccacatgtgacattgtggttggccaatgtca 64  Q
    |||||| || |||| ||||||||||||||||||||| ||||||||    
T  2254608 gaaaaaaaaaaaagtcacatgtgacattgtggttggtcaatgtca 2254564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 86
Target Start/End: Original strand, 31012259 - 31012287
Alignment:
Q  58 aatgtcaccaaccacaatgtcacctaagt 86  Q
    |||||||||||||||||||||||||||||    
T  31012259 aatgtcaccaaccacaatgtcacctaagt 31012287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 43465168 - 43465112
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcacc 66  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  43465168 tcttgtgaaaaaaaaagaagaaagccacatgtgatattgtggttggccaatgtcacc 43465112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 45051339 - 45051384
Alignment:
Q  35 cacatgtgacattgtggttggccaatgtcaccaaccacaatgtcac 80  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  45051339 cacatgtgacattgtggtcggccaatgtcaccaaccacaatgtcac 45051384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 31470824 - 31470771
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcac 65  Q
    |||||||||||||||||||| |  || ||||||||||||||||| |||||||||    
T  31470824 ttgtgaaagaaaaagaagaatgatacttgtgacattgtggttggtcaatgtcac 31470771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 4531848 - 4531896
Alignment:
Q  39 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagtt 87  Q
    ||||||||||||||||| |||| |||||||| ||||||||| |||||||    
T  4531848 tgtgacattgtggttggtcaatatcaccaactacaatgtcatctaagtt 4531896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 33763505 - 33763469
Alignment:
Q  45 attgtggttggccaatgtcaccaaccacaatgtcacc 81  Q
    |||||||||| ||||||||||||||||||||||||||    
T  33763505 attgtggttgaccaatgtcaccaaccacaatgtcacc 33763469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 7931605 - 7931655
Alignment:
Q  15 tgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcac 65  Q
    ||||||| ||||||||||| ||  ||||||||||||||| |||||||||||    
T  7931605 tgaaagagaaagaagaaagacatttgtgacattgtggtttgccaatgtcac 7931655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 33763539 - 33763589
Alignment:
Q  15 tgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcac 65  Q
    ||||||||||||||||||| ||| ||||| ||||| |||| ||||||||||    
T  33763539 tgaaagaaaaagaagaaaggcacttgtgatattgtagttgaccaatgtcac 33763589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 31470849 - 31470878
Alignment:
Q  39 tgtgacattgtggttggccaatgtcaccaa 68  Q
    ||||||||||||||||||||||||||||||    
T  31470849 tgtgacattgtggttggccaatgtcaccaa 31470878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 12285 - 12338
Alignment:
Q  12 ttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcac 65  Q
    |||||||||| ||||||||| | ||| ||||||||||||||||| |||||||||    
T  12285 ttgtgaaagagaaagaagaaggacacttgtgacattgtggttggtcaatgtcac 12338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 1866 - 1819
Alignment:
Q  39 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    ||||| ||||||||||  ||||||||||||||||||||||||| ||||    
T  1866 tgtgatattgtggttgatcaatgtcaccaaccacaatgtcacccaagt 1819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 205 - 252
Alignment:
Q  39 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    ||||| ||||||||||  ||||||||||||||||||||||||| ||||    
T  205 tgtgatattgtggttgatcaatgtcaccaaccacaatgtcacccaagt 252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 26553 - 26506
Alignment:
Q  39 tgtgacattgtggttggccaatgtcaccaaccacaatgtcacctaagt 86  Q
    ||||| |||||| ||| ||||||||||||||||||||||||| |||||    
T  26553 tgtgatattgtgtttgaccaatgtcaccaaccacaatgtcacataagt 26506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 507798 - 507740
Alignment:
Q  10 tcttgtgaaagaaaaagaagaaagccacatgtgacattgtggttggccaatgtcaccaa 68  Q
    |||||||||||| |||||||||| |||| ||| | |||||| |||| ||||||||||||    
T  507798 tcttgtgaaagagaaagaagaaatccacttgtaatattgtgattggtcaatgtcaccaa 507740  T

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