View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3572_low_3 (Length: 478)
Name: NF3572_low_3
Description: NF3572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3572_low_3 |
 | |
|
| [»] scaffold0176 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 306
Target Start/End: Original strand, 3137678 - 3137964
Alignment:
| Q |
20 |
gctcacacactcaaaaattgcaatcaatgtcacgtggaaatcagccacgtgaattaagcttgacaggtgtttgattgattcttgttttgtagtttcatac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3137678 |
gctcacacactcaaaaattgcaatcaatgtcatgtggaaatcagccacgtgaattaagcttgacaggtgtttgattgattcttgttttgtagtttcatac |
3137777 |
T |
|
| Q |
120 |
ccatcaatggatcgaacacgccatcgtccgtctcaacgtcgtcgttccatctcccggcgctgaagtttccgtcgttgaggaaaagattgaaatcgatgtt |
219 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
3137778 |
ccattaatggatcgaacacgccatcgtccgtctcaacgtcgccgttccatctcccgccgctgaagtttccgtcgtcgaggaaaagattgaaatcgacgtt |
3137877 |
T |
|
| Q |
220 |
ggggttgaagaagttcccagtatcacgagaattgcgacgattaccattgaagtttcaggtgacaaagttaccattgtttagggtttc |
306 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3137878 |
gtggttgaagaagttcccagtatcacgagaattgcggcgattaccattgaagtttcaggtgacaaagttaccattgtttagggtttc |
3137964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 42837117 - 42836829
Alignment:
| Q |
20 |
gctcacacactcaaaaattgcaatcaatgtcacgtggaaatcagccacgtgaattaagcttgacaggtgtttgattgattcttgttttgtagtttcatac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42837117 |
gctcacacactcaaaaattgcaatcaatgttatgtggaaatcagccacgtgaattaagcttgagaggtgtttgattgattcttgttttgtagcttcatac |
42837018 |
T |
|
| Q |
120 |
ccatcaatggatcgaacacgccatcgtccgtctcaacgtcgtcgt--tccatctcccggcgctgaagtttccgtcgttgaggaaaagattgaaatcgatg |
217 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||| |||| ||| |||||||||| || ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42837017 |
ccattaatggatcgaacacgccgtcgtccgtctcaatgtcgccgtcgtccatctcccaccgttgaagtttccgtcgtcgaggaaaagattgaaatcgatg |
42836918 |
T |
|
| Q |
218 |
ttggggttgaagaagttcccagtatcacgagaattgcgacgattaccattgaagtttcaggtgacaaagttaccattgtttagggtttc |
306 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42836917 |
ttgtggttgaagaagttcccagtatcacgagaattgcggcgattaccattgaagtttcaggtgaccaagttaccattgtttagggtttc |
42836829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 370 - 476
Target Start/End: Original strand, 3138028 - 3138134
Alignment:
| Q |
370 |
ttatcatggtgttgttgcagtgaagtaaattgagttattagttatggtttttgctactataaaccaaaattaatttatgatttcggcttttgattcttct |
469 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||| |
|
|
| T |
3138028 |
ttattatggtgttgttgtagtgaagtaaattgagttattagttatggtttttgctactataaacctaaattaatttatgatttctgcttttgattgttct |
3138127 |
T |
|
| Q |
470 |
cactcga |
476 |
Q |
| |
|
| ||||| |
|
|
| T |
3138128 |
ctctcga |
3138134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 370 - 452
Target Start/End: Complemental strand, 42836765 - 42836684
Alignment:
| Q |
370 |
ttatcatggtgttgttgcagtgaagtaaattgagttattagttatggtttttgctactataaaccaaaattaatttatgattt |
452 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| ||||||||||||| |
|
|
| T |
42836765 |
ttattatggtgttgttgcagtgaagtaaattgagttattagatatgg-ttttgctactataaacttaaagtaatttatgattt |
42836684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 429
Target Start/End: Complemental strand, 16527 - 16474
Alignment:
| Q |
375 |
atggtgttgttgcagtgaagtaaattgagttattagttatggtttttgctactat |
429 |
Q |
| |
|
||||||| |||| ||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
16527 |
atggtgtcgttgtagtgaagaaaattgagttattagttatgg-ttttgctactat |
16474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University