View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3572_low_4 (Length: 451)
Name: NF3572_low_4
Description: NF3572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3572_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 434
Target Start/End: Original strand, 39073222 - 39073646
Alignment:
| Q |
10 |
catcatcaagttcctatgaattcttctgtaatttggccaccaaataactacaacaacatgatcatggnnnnnnnnnnnnnnnnntcttcatcaggttcac |
109 |
Q |
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| T |
39073222 |
catcatcaagttcctatgaattcttctgtaatttggccacaaaataactacagcaacatgatcatggcaccaccaccaccaccatcttcatcaggttcac |
39073321 |
T |
|
| Q |
110 |
tcagtgacatcttagggatccatcgaatcgaagacgtagaagaacaagaagaagagttaggagctatgaaggaaatgatgtacaagattgcagctatgca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39073322 |
tcagtgacatcttagggatccatcgaatcgaagacgtagaagaacaagaagaagagttaggagctatgaaggaaatgatgtacaagattgcagctatgca |
39073421 |
T |
|
| Q |
210 |
accggtggacatcgacccagcaacgattcgaaaaccaaaacgaagaaacgttcgaatcagcgaagatccacaaagtgttgcagctagacatagaagagaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39073422 |
accggtggacatcgacccagcaacgattcgaaaaccaaaacgaagaaacgttcgaatcagcgaagatccacaaagtgttgcagctagacatagaagagaa |
39073521 |
T |
|
| Q |
310 |
agaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatacagcttctatgcttgatgaagccattcgttatgttaagt |
409 |
Q |
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| T |
39073522 |
agaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatacagcttctatgcttgatgaagccattcgttatgttaagt |
39073621 |
T |
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| Q |
410 |
ttttgaagagacaaatcaagttgct |
434 |
Q |
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| T |
39073622 |
ttttgaagagacaaatcaagttgct |
39073646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 423
Target Start/End: Original strand, 6259580 - 6259729
Alignment:
| Q |
274 |
gatccacaaagtgttgcagctagacatagaagagaaagaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatacag |
373 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||||||||| ||||| | || | || | |||||| | || ||||||||||| |||||||| || | |
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| T |
6259580 |
gatccacaaagtgtagcagcaagacatagaagagaaagaattagtgaaagaataaggatattacaaagattagtacctggtggaacaaaaatggacactg |
6259679 |
T |
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| Q |
374 |
cttctatgcttgatgaagccattcgttatgttaagtttttgaagagacaa |
423 |
Q |
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|||||||| | |||||||| || | |||||| ||||||||||||| |||| |
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| T |
6259680 |
cttctatgttagatgaagcaatacattatgtgaagtttttgaagaaacaa |
6259729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 272 - 411
Target Start/End: Original strand, 46899304 - 46899443
Alignment:
| Q |
272 |
aagatccacaaagtgttgcagctagacatagaagagaaagaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatac |
371 |
Q |
| |
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||||||| || ||| | ||||||||||| |||||||||||||| || ||||| || | || || |||||| | || || |||||||||||||||||||| |
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| T |
46899304 |
aagatcctcagagtatagcagctagacacagaagagaaagaataagcgagaaaataagaatactgcaaagaatggtaccaggtggaactaaaatggatac |
46899403 |
T |
|
| Q |
372 |
agcttctatgcttgatgaagccattcgttatgttaagttt |
411 |
Q |
| |
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|| || ||| | |||||||| |||| ||||||||||||| |
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| T |
46899404 |
tgcatcaatgttggatgaagctattcattatgttaagttt |
46899443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 320
Target Start/End: Complemental strand, 25645321 - 25645275
Alignment:
| Q |
274 |
gatccacaaagtgttgcagctagacatagaagagaaagaatcagtga |
320 |
Q |
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|||||||||||||||||||||||| | |||||| | ||||||||||| |
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| T |
25645321 |
gatccacaaagtgttgcagctagagaaagaagacatagaatcagtga |
25645275 |
T |
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