View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3572_low_5 (Length: 449)

Name: NF3572_low_5
Description: NF3572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3572_low_5
NF3572_low_5
[»] chr6 (3 HSPs)
chr6 (271-326)||(24414328-24414383)
chr6 (233-275)||(1759099-1759141)
chr6 (214-253)||(31038975-31039014)
[»] chr7 (1 HSPs)
chr7 (292-353)||(439887-439948)
[»] chr5 (1 HSPs)
chr5 (213-283)||(31184231-31184299)
[»] chr8 (1 HSPs)
chr8 (239-276)||(14983485-14983522)
[»] chr4 (1 HSPs)
chr4 (1-30)||(36085951-36085980)


Alignment Details
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 24414383 - 24414328
Alignment:
Q  271 ttgttagtgaagaattgaagatttcttccttccatctattaattgtatcggtttga 326  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24414383 ttgttagtgcagaattgaagatttcttccttccatctattaattgtatcggtttga 24414328  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 1759099 - 1759141
Alignment:
Q  233 ttgtaatgttaggttttagaattgaaatgttagtgtgtttgtt 275  Q
    ||||||||||||||||||| |||||||||||||||| ||||||    
T  1759099 ttgtaatgttaggttttaggattgaaatgttagtgtatttgtt 1759141  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 253
Target Start/End: Original strand, 31038975 - 31039014
Alignment:
Q  214 tgaatttttaattgaatacttgtaatgttaggttttagaa 253  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  31038975 tgaatttaaaattgaatacttgtaatgttaggttttagaa 31039014  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 439948 - 439887
Alignment:
Q  292 tttcttccttccatctattaattgtatcggtttgagaagctaaaagagagaaagcagtgtga 353  Q
    |||||||||||||||| ||||||| || |||||||||||||||||||||||||  |||||||    
T  439948 tttcttccttccatctgttaattgaattggtttgagaagctaaaagagagaaattagtgtga 439887  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 31184231 - 31184299
Alignment:
Q  213 ctgaatttttaattgaatacttgtaatgttaggttttagaattgaaatgttagtgtgtttgttagtgaaga 283  Q
    |||||||||||||| ||||||||| ||  |||||||||||||||||||||| || ||||||||| ||||||    
T  31184231 ctgaatttttaattcaatacttgttat--taggttttagaattgaaatgtttgtttgtttgttaatgaaga 31184299  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 276
Target Start/End: Complemental strand, 14983522 - 14983485
Alignment:
Q  239 tgttaggttttagaattgaaatgttagtgtgtttgtta 276  Q
    |||||||||||| |||||||||||||||||||||||||    
T  14983522 tgttaggttttaaaattgaaatgttagtgtgtttgtta 14983485  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 36085980 - 36085951
Alignment:
Q  1 tttatgagttttaggttttagattcttatg 30  Q
    ||||||||||||||||||||||||||||||    
T  36085980 tttatgagttttaggttttagattcttatg 36085951  T

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