View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3572_low_6 (Length: 415)

Name: NF3572_low_6
Description: NF3572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3572_low_6
NF3572_low_6
[»] chr6 (2 HSPs)
chr6 (1-365)||(13327151-13327516)
chr6 (360-397)||(13327795-13327832)
[»] chr4 (9 HSPs)
chr4 (1-397)||(33832381-33832777)
chr4 (1-397)||(37919002-37919398)
chr4 (9-346)||(46595898-46596235)
chr4 (9-271)||(37074678-37074940)
chr4 (9-325)||(22504844-22505160)
chr4 (12-346)||(50960320-50960657)
chr4 (1-51)||(27465787-27465837)
chr4 (15-52)||(27517606-27517643)
chr4 (2-51)||(27472863-27472912)
[»] chr8 (3 HSPs)
chr8 (1-385)||(36998467-36998851)
chr8 (9-325)||(43734583-43734899)
chr8 (221-325)||(6575214-6575318)
[»] chr3 (2 HSPs)
chr3 (9-325)||(36498386-36498702)
chr3 (208-325)||(35002348-35002465)
[»] chr7 (6 HSPs)
chr7 (9-313)||(42359446-42359750)
chr7 (9-346)||(7926866-7927203)
chr7 (9-280)||(45184570-45184838)
chr7 (9-325)||(6998377-6998693)
chr7 (81-325)||(44265566-44265809)
chr7 (13-65)||(44265491-44265543)
[»] chr2 (2 HSPs)
chr2 (9-325)||(38503899-38504215)
chr2 (183-314)||(32665509-32665640)
[»] chr5 (2 HSPs)
chr5 (9-262)||(19285-19538)
chr5 (219-290)||(28122947-28123019)
[»] scaffold1290 (1 HSPs)
scaffold1290 (191-280)||(2064-2153)
[»] scaffold0175 (1 HSPs)
scaffold0175 (221-325)||(32009-32113)


Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 13327151 - 13327516
Alignment:
Q  1 gtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnn-gagttgaattgtgcataaa 99  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||        |||||||||||||||||||    
T  13327151 gttttcgctcagcgacaccattttgttgtggtgtgtgtggacaactagactgatgtgtgataccataagaaataaaaaaaagagttgaattgtgcataaa 13327250  T
Q  100 aatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatga 199  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  13327251 aatattttttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacataaagtcgtaaatgcaccaaataattatga 13327350  T
Q  200 acgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccc 299  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13327351 acgatccttcaataaggttatccaagtccatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgattaggaccc 13327450  T
Q  300 caaatatcagaatggacaatatcaaaagcatgtttggatcttttatttgtcttgttgtgaagagat 365  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13327451 caaatatcataatggaaaatatcaaaagcatgtttggatcttttatttgtctttttgtgaagagat 13327516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 397
Target Start/End: Original strand, 13327795 - 13327832
Alignment:
Q  360 agagatgtccgaacatgtttgccaagctaacatgactc 397  Q
    |||||||||||||||||||||||||| |||| ||||||    
T  13327795 agagatgtccgaacatgtttgccaagttaacgtgactc 13327832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 33832777 - 33832381
Alignment:
Q  1 gtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaa 100  Q
    ||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| | ||||||| ||||||       ||||||||||||||| ||||    
T  33832777 gtttccgctcagctaaaccattttgttgcggtgtgtgcggacaactagactgatgtatgataccatgagaaatcaaaaaggagttgaattgtgcagaaaa 33832678  T
Q  101 atattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaa 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| | |||| ||||    
T  33832677 gtattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctctaaacaaaaagtcttaaatgcaccaaaaaattctgaa 33832578  T
Q  201 cgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggacccc 300  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||  | |||||||||||| ||||||||||||||||||| || ||  |||||||||    
T  33832577 cgatccttcaataaggttatccaagtacatcgcgagaaatcatcgataaatgtaacataatacctgtatcctaaattagagggaacgtggctaggacccc 33832478  T
Q  301 aaatatcagaatggacaatatcaaaagcatgtttggatcttttatttgtcttgttgtgaagagatgtccgaacatgtttgccaagctaacatgactc 397  Q
    ||||||||||||| |||||||| || ||||| ||||||||||||||     | ||||||| ||||||| |||||||||||||||||| ||| |||||    
T  33832477 aaatatcagaatgcacaatatcgaaggcatgcttggatcttttattgacactattgtgaaaagatgtctgaacatgtttgccaagctgacacgactc 33832381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 37919002 - 37919398
Alignment:
Q  1 gtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaa 100  Q
    ||||| ||||||| |||||||||||||| |||||| ||||| ||| |||||||||| | ||||||| ||||||       |||||||||| |||| ||||    
T  37919002 gtttctgctcagctacaccattttgttgcggtgtgcgcggataacgagactgatgtatgataccatgagaaataaaaaaggagttgaattatgcaaaaaa 37919101  T
Q  101 atattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaa 200  Q
     |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| | || | ||||    
T  37919102 gtattctttggcattgtgacttctcaaaactttgattgttttcccaaattgagtctttatctctaaacaaaaagtcttaaatgcaccaaaaaaatctgaa 37919201  T
Q  201 cgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggacccc 300  Q
    | |||||||||||||||||||||||||||||| ||||||||||||||  | |||||||||||| ||||||||||||||||| | ||  |  || ||||||    
T  37919202 caatccttcaataaggttatccaagtacatcgcgagaaatcatcgataaatgtaacataatacctgtatcctaaattagagagaacgcggctacgacccc 37919301  T
Q  301 aaatatcagaatggacaatatcaaaagcatgtttggatcttttatttgtcttgttgtgaagagatgtccgaacatgtttgccaagctaacatgactc 397  Q
    ||||||||||||| |||||||| || ||||| || |||||||||||     | ||||||| ||||||| |||||||||||||||||| ||| |||||    
T  37919302 aaatatcagaatgcacaatatcgaaggcatgcttcgatcttttattgacactattgtgaaaagatgtctgaacatgtttgccaagctgacacgactc 37919398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 9 - 346
Target Start/End: Original strand, 46595898 - 46596235
Alignment:
Q  9 tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt 108  Q
    |||| ||| |||||||||||||||||||| |||||||| || |||||| | ||||||  ||||         ||||||||| ||||| ||||||||||||    
T  46595898 tcagtgacgccattttgttgtggtgtgtggggacaactggattgatgtatgataccaagagaagccatgaaagagttgaatggtgcagaaaaatattctt 46595997  T
Q  109 tggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcctt 208  Q
    | ||||||||||| | ||||| |   |||  ||| ||||||||  ||||||||| ||||||||| |||  ||| |||||| |||||| |||||| |||||    
T  46595998 ttgcattgtcactccgcaaaattcgaattccttttccaaattggttctttatctctgaacaaaatgtctgaaaggcaccaaataattgtgaacggtcctt 46596097  T
Q  209 caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatca 308  Q
    || ||| || ||||| || ||||  || |||||||||||| |||| ||||||||  | ||||| ||| ||||   |||  || |||||||||| | ||||    
T  46596098 cagtaaagtgatccaggtgcatctagaaaaatcatcgatgaaagtgacataatatctatatcccaaagtagacatcacccgactaggaccccacacatca 46596197  T
Q  309 gaatggacaatatcaaaagcatgtttggatcttttatt 346  Q
    ||||| ||||||||||| | |   ||||||||||||||    
T  46596198 gaatgaacaatatcaaagggagacttggatcttttatt 46596235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 271
Target Start/End: Complemental strand, 37074940 - 37074678
Alignment:
Q  9 tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt 108  Q
    |||||||||||||||||||| |||||||| ||||| || ||||||||| ||||||||| ||||         ||||||||   || | ||||||||||||    
T  37074940 tcagcgacaccattttgttgcggtgtgtgaggacagctggactgatgtataataccatgagaagccataaaggagttgaacgatgtagaaaaatattctt 37074841  T
Q  109 tggcattgtcacttctcaaaactttga-ttgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcct 207  Q
    ||||||||||||| ||  ||| || || ||||||| |||||||  |||||||||| ||||||||| ||   |||  ||||| |||||| | |||||||||    
T  37074840 tggcattgtcact-ctgtaaaattcgaattgttttaccaaatttggtctttatctctgaacaaaacgtttgaaagacaccaaataattctaaacgatcct 37074742  T
Q  208 tcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcc 271  Q
    |||||||||| ||||| || ||||  ||||||||||| ||| |||| | |||||| ||||||||    
T  37074741 tcaataaggtgatccaggtgcatctagagaaatcatcaatgaaagtgatataatatttgtatcc 37074678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 9 - 325
Target Start/End: Original strand, 22504844 - 22505160
Alignment:
Q  9 tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt 108  Q
    ||||| || |||||||||||||||||||| |||||||| || |||||| | ||||||  ||||         ||||||||| ||||| ||||||||||||    
T  22504844 tcagcaacgccattttgttgtggtgtgtggggacaactggattgatgtatgataccaagagaagccatgaaagagttgaatggtgcagaaaaatattctt 22504943  T
Q  109 tggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcctt 208  Q
    | |||||||||||   ||||| |   ||| |||| ||||||||  ||| ||||| ||||||||| |||  ||| |||||| |||||| |||||| |||||    
T  22504944 ttgcattgtcactctacaaaattcgaattatttttccaaattggttctatatctctgaacaaaatgtctgaaaggcaccaaataattgtgaacggtcctt 22505043  T
Q  209 caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatca 308  Q
    || ||| || ||||| || ||||  || |||||||||||| |||| ||||||||  | ||||| ||| ||||   |||  || |||||||||| | ||||    
T  22505044 cagtaaagtgatccaggtgcatctagaaaaatcatcgatgaaagtgacataatatctatatcccaaagtagacatcacccgactaggaccccacacatca 22505143  T
Q  309 gaatggacaatatcaaa 325  Q
    ||||| |||||||||||    
T  22505144 gaatgaacaatatcaaa 22505160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 346
Target Start/End: Complemental strand, 50960657 - 50960320
Alignment:
Q  12 gcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaat--attcttt 109  Q
    ||||| |||||||||||||||||||| |||||||| || |||||| | ||||||  ||||         ||||||||| ||||| |||||   |||||||    
T  50960657 gcgacgccattttgttgtggtgtgtggggacaactggattgatgtatgataccaagagaagccatgaaagagttgaatggtgcagaaaaaataattcttt 50960558  T
Q  110 ggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaa-agtcgtaaatgcaccacataattatgaacgatcctt 208  Q
     ||||||||||| | ||||| |   |||  ||| ||||||||  ||||||||| ||||||||| ||||  ||| |||||| |||||| |||||| |||||    
T  50960557 tgcattgtcactccgcaaaattcgaattccttttccaaattggttctttatctctgaacaaaatagtctgaaaggcaccaaataattgtgaacggtcctt 50960458  T
Q  209 caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatca 308  Q
    ||  || || ||||| || ||||  || |||||||| ||| |||| |||| |||  | ||||| ||| ||||   |||  || |||||||||| | ||||    
T  50960457 caggaaagtgatccaggtgcatctagaaaaatcatcaatgaaagtgacatgatatctatatcccaaagtagacaacacccgactaggaccccacacatca 50960358  T
Q  309 gaatggacaatatcaaaagcatgtttggatcttttatt 346  Q
    ||||| ||||||||||| | |   ||||||||||||||    
T  50960357 gaatgaacaatatcaaagggagacttggatcttttatt 50960320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 27465787 - 27465837
Alignment:
Q  1 gtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagact 51  Q
    ||||||||||||||| || |||||||||| ||||||| |||||||||||||    
T  27465787 gtttccgctcagcgatactattttgttgtcgtgtgtgtggacaactagact 27465837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 27517643 - 27517606
Alignment:
Q  15 acaccattttgttgtggtgtgtgcggacaactagactg 52  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  27517643 acaccattttgatgtggtgtgtgcggacaactagactg 27517606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 27472863 - 27472912
Alignment:
Q  2 tttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagact 51  Q
    |||| ||||||| |||| |||||||||| |||||||| ||||||||||||    
T  27472863 tttctgctcagcaacactattttgttgtcgtgtgtgcagacaactagact 27472912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 36998851 - 36998467
Alignment:
Q  1 gtttccgctcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaa 100  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||| ||||||       ||||| ||||||| | ||||    
T  36998851 gtttccgctcagcgacaccattttgttgcggtgtgtgtggacaactagactgatgtgtgataccatgagaaatcaaaaaggagttaaattgtgtagaaaa 36998752  T
Q  101 atattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaa 200  Q
     |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| | ||||||||||| ||||||||| | |  ||| ||||    
T  36998751 gtattctttggcattgtcacttctcaaaactttgattgttttccccaactgagtctttatctctaaacaaaaagtcttaaatgcactagactattctgaa 36998652  T
Q  201 cgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggacccc 300  Q
    | |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||| ||||   || |||||||||    
T  36998651 ctatccttcaataaggttatccaagtacatcgcgagaaatcatcgatgaaagtaacataatacctgtatcctaaattagaaggcatgcgactaggacccc 36998552  T
Q  301 aaatatcagaatggacaatatcaaaagcatgtttggatcttttatttgtcttgttgtgaagagatgtccgaacatgtttgccaag 385  Q
    |||||||| |||| |||||||| || ||||| || |||||||||||     || | |||| ||||||||||||||||||||||||    
T  36998551 aaatatcaaaatgcacaatatcgaaggcatgcttagatcttttattgacactgctatgaaaagatgtccgaacatgtttgccaag 36998467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 325
Target Start/End: Complemental strand, 43734899 - 43734583
Alignment:
Q  9 tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt 108  Q
    |||||||| |||||||||||||||||||| |||||||| || |||||| | ||||||  ||||         ||||||||| ||||| ||||||||||||    
T  43734899 tcagcgacgccattttgttgtggtgtgtggggacaactggattgatgtatgataccaagagaagccatgaaagagttgaatggtgcaaaaaaatattctt 43734800  T
Q  109 tggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcctt 208  Q
    | ||||||||||| | ||||| |   |||  ||| ||||||||  ||||||||| ||||||||| |||  ||| |||||| |||||| |||||| |||||    
T  43734799 ttgcattgtcactccgcaaaattcgaattccttttccaaattggttctttatctctgaacaaaatgtcagaaaggcaccaaataattgtgaacggtcctt 43734700  T
Q  209 caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatca 308  Q
    || |||  | ||||| || ||||  || ||| |||| ||| |||| ||||||||  | ||||| ||| ||||   |||  || |||||||||| | ||||    
T  43734699 cagtaaaatgatccaggtgcatctagaaaaaccatcaatgaaagtgacataatatctttatcccaaagtagacatcacccgactaggaccccacacatca 43734600  T
Q  309 gaatggacaatatcaaa 325  Q
    ||||| |||||||||||    
T  43734599 gaatgaacaatatcaaa 43734583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 221 - 325
Target Start/End: Original strand, 6575214 - 6575318
Alignment:
Q  221 ccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatcagaatggacaata 320  Q
    ||||||||||| |||||||||||| ||  ||||||||||||||||||| |||||  |||| || ||| || |||||||||||||||||||||| |||| |    
T  6575214 ccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaacacgactaggaccccaaatatcagaatgaacaaca 6575313  T
Q  321 tcaaa 325  Q
    |||||    
T  6575314 tcaaa 6575318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 9 - 325
Target Start/End: Complemental strand, 36498702 - 36498386
Alignment:
Q  9 tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt 108  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||| ||||         |||||||||  || | ||||||||||||    
T  36498702 tcagcgacaccattttgttgcggtgtgtgaggacaactggactgatgtataataccatgagaagccatgaaggagttgaatgatgtagaaaaatattctt 36498603  T
Q  109 tggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcctt 208  Q
    | ||||||||||| |  |||| |   |||||||| ||||| || |||||||||| ||||||||| ||   |||||||||| |||||| ||||||||||||    
T  36498602 ttgcattgtcactccgtaaaattcgaattgttttaccaaactgggtctttatctctgaacaaaacgtttgaaatgcaccaaataattctgaacgatcctt 36498503  T
Q  209 caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatca 308  Q
     |||||||| |||||||| ||||  ||||||||||| ||| |||| |||||||| |||||||| ||| |||| | |||| || |||||||||||| ||||    
T  36498502 taataaggtgatccaagtgcatctagagaaatcatcaatgaaagtgacataatatttgtatcccaaagtagacgacacacgactaggaccccaaacatca 36498403  T
Q  309 gaatggacaatatcaaa 325  Q
    |||||||  ||||||||    
T  36498402 gaatggatgatatcaaa 36498386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 325
Target Start/End: Original strand, 35002348 - 35002465
Alignment:
Q  208 tcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatc 307  Q
    ||||||| || |||||||| ||||  ||||||||||| ||| || ||||||||||  |||||||||||| | |||| |||||| |||||||||||| |||    
T  35002348 tcaataaagtgatccaagtgcatctcgagaaatcatcaatgaaactaacataatatctgtatcctaaataatagggtacatgactaggaccccaaacatc 35002447  T
Q  308 agaatggacaatatcaaa 325  Q
    | |||| |||||||||||    
T  35002448 ataatgaacaatatcaaa 35002465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 313
Target Start/End: Original strand, 42359446 - 42359750
Alignment:
Q  9 tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt 108  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||| ||||         |||||||||  || | ||||||||| ||    
T  42359446 tcagcgacaccattttgttgcggtgtgtgaggacaactggactgatgtataataccatgagaagccataaaggagttgaatgatgtagaaaaatattatt 42359545  T
Q  109 tggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcctt 208  Q
    ||||||||||||| |  |||| |   |||||||| |||||||| |||||||||||||||||||| ||   ||| |||||| |||||||||||||||||||    
T  42359546 tggcattgtcactccgtaaaattcgaattgttttaccaaattgggtctttatctatgaacaaaacgtttgaaaggcaccaaataattatgaacgatcctt 42359645  T
Q  209 caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatca 308  Q
    ||||||||| ||||| || ||||  ||||||||||| ||| |||| |||||||| |||||||| ||| |||| | |||  || | |||||||||| ||||    
T  42359646 caataaggtgatccaggtgcatctagagaaatcatcaatgaaagtgacataatatttgtatcccaaagtagacgacacgcgactgggaccccaaacatca 42359745  T
Q  309 gaatg 313  Q
    |||||    
T  42359746 gaatg 42359750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 346
Target Start/End: Complemental strand, 7927203 - 7926866
Alignment:
Q  9 tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt 108  Q
    |||||||| ||||||||||||||| |||| ||||||||||| |||||| | ||||||  ||||         ||||||||| ||||| ||||||||||||    
T  7927203 tcagcgacgccattttgttgtggtttgtggggacaactagattgatgtatgataccaagagaagccatgaaagagttgaatggtgcagaaaaatattctt 7927104  T
Q  109 tggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcctt 208  Q
    | |||||||||||   ||||| |   |||  ||| ||||||||  ||||||||| ||||||||| |||  ||| |||||| |||||| |||||| |||||    
T  7927103 ttgcattgtcactctgcaaaattcgaattccttttccaaattggttctttatctctgaacaaaatgtctgaaaggcaccaaataattgtgaacggtcctt 7927004  T
Q  209 caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatca 308  Q
    || ||| || |||||  | ||||  || |||||||| ||| |||| ||||||||  | ||||| ||| ||||  ||||  || |||||||||| | ||||    
T  7927003 cagtaaagtgatccagatgcatctagaaaaatcatcaatgaaagtgacataatatctatatcccaaagtagacagcacccgactaggaccccatacatca 7926904  T
Q  309 gaatggacaatatcaaaagcatgtttggatcttttatt 346  Q
    ||||| ||||||||||| | |   ||||||||||||||    
T  7926903 gaatgaacaatatcaaagggagacttggatcttttatt 7926866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 280
Target Start/End: Original strand, 45184570 - 45184838
Alignment:
Q  9 tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt 108  Q
    |||| |||||||||||||||  ||||||| ||||| || ||||||||| ||||||||| ||||         |||||||||  || | |||||||||       
T  45184570 tcagtgacaccattttgttgcagtgtgtgaggacagctggactgatgtataataccatgagaagccataaaggagttgaatgatgtagaaaaatatt--- 45184666  T
Q  109 tggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcctt 208  Q
    ||||||| ||||| |  |||| |   |||||||| ||| |||| |||||||||| ||||||||| ||   ||| |||||| |||||||||||||||||||    
T  45184667 tggcattctcactccgtaaaattcgaattgttttaccagattgggtctttatctctgaacaaaacgtttgaaaggcaccaaataattatgaacgatcctt 45184766  T
Q  209 caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattaga 280  Q
    ||||||||| ||||| || ||||  ||||||||||| ||| |||| |||||||| |||||||| ||| ||||    
T  45184767 caataaggtgatccaggtgcatctagagaaatcatcaatgaaagtgacataatatttgtatcccaaagtaga 45184838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 325
Target Start/End: Complemental strand, 6998693 - 6998377
Alignment:
Q  9 tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt 108  Q
    |||||||| |||||||||||||||||||| |||| ||| || |||||| | ||||||  ||||         ||||||||| ||||| ||||||||||||    
T  6998693 tcagcgacgccattttgttgtggtgtgtggggacgactcgattgatgtatgataccaagagaagccatgaaagagttgaatggtgcagaaaaatattctt 6998594  T
Q  109 tggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcctt 208  Q
    | ||||| |||||    |||| |   |||  ||| ||||||||  ||||||||| | ||||||| |||  ||| |||||| |||||| |||||| |||||    
T  6998593 ttgcattttcactctggaaaattcaaattccttttccaaattggttctttatctctaaacaaaatgtctgaaaggcaccaaataattgtgaacggtcctt 6998494  T
Q  209 caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatca 308  Q
    || ||| || ||||| || ||||  || |||||||| ||| |||| |||||||| |||||||| ||| ||||   |||  || |||||||||| | ||||    
T  6998493 cagtaaagtgatccaggtgcatctagaaaaatcatcaatgaaagtgacataatatttgtatcccaaagtagacatcacccgactaggaccccacacatca 6998394  T
Q  309 gaatggacaatatcaaa 325  Q
    ||||| |||||||||||    
T  6998393 gaatgaacaatatcaaa 6998377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 325
Target Start/End: Original strand, 44265566 - 44265809
Alignment:
Q  81 gagttgaattgtgcataaaaatattctttggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaa 180  Q
    ||||||||| ||||   |||||||||||| ||||||||||| | ||||| |   |||  ||| ||||||||  |||| |||| | ||||||| |||  ||    
T  44265566 gagttgaatggtgctgtaaaatattcttttgcattgtcactccgcaaaattcgaattccttttccaaattggttctt-atctctaaacaaaatgtctgaa 44265664  T
Q  181 atgcaccacataattatgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattaga 280  Q
    | |||||| |||||| |||||| ||||||| ||| || |||||| | ||||  || |||||||| ||| |||| ||||||||  | ||||| ||| ||||    
T  44265665 aggcaccaaataattgtgaacggtccttcagtaaagtgatccaaatgcatctagaaaaatcatcaatgaaagtgacataatatctatatcccaaagtaga 44265764  T
Q  281 gggcacatgaataggaccccaaatatcagaatggacaatatcaaa 325  Q
       |||  || |||||||||| | || |||||| |||||||||||    
T  44265765 caacacccgactaggaccccacacattagaatgaacaatatcaaa 44265809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 44265491 - 44265543
Alignment:
Q  13 cgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaatacca 65  Q
    |||| |||||||||||||||||||| |||||||| || |||||| | ||||||    
T  44265491 cgacgccattttgttgtggtgtgtggggacaactggattgatgtatgatacca 44265543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 9 - 325
Target Start/End: Complemental strand, 38504215 - 38503899
Alignment:
Q  9 tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt 108  Q
    |||||||| |||||||||||||||||||| |||||||| || |||||| | ||||||  ||||         ||||||||| ||||| ||||||||||||    
T  38504215 tcagcgacgccattttgttgtggtgtgtggggacaactggattgatgtatgataccaagagaagccatgaaagagttgaatggtgcagaaaaatattctt 38504116  T
Q  109 tggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcctt 208  Q
    | ||||||||||| | ||||| |   |||  ||| ||||||||  ||||||||| ||||||||| |||  |||  ||||| |||||| |||||| |||||    
T  38504115 ttgcattgtcactccgcaaaattcgaattccttttccaaattggttctttatctctgaacaaaatgtctgaaagacaccaaataattgtgaacggtcctt 38504016  T
Q  209 caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatca 308  Q
    || ||| || ||||| || ||||  || |||||||| ||| |||| ||||||||  | ||||| ||| ||||   |||  || |||||||||| | ||||    
T  38504015 cagtaaagtgatccaggtgcatctagaaaaatcatcaatgaaagtgacataatatctatatcccaaagtagacatcacccgactaggaccccacacatca 38503916  T
Q  309 gaatggacaatatcaaa 325  Q
    ||||| |||||||||||    
T  38503915 gaatgaacaatatcaaa 38503899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 183 - 314
Target Start/End: Original strand, 32665509 - 32665640
Alignment:
Q  183 gcaccacataattatgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagg 282  Q
    |||||| |||||| |||| |||| ||||||||||| ||||| || ||||  |||||||||||  || |||| |||||||| |||||||| ||| |||| |    
T  32665509 gcaccaaataattctgaatgatctttcaataaggtgatccaggtgcatctagagaaatcatcattgaaagtgacataatatttgtatcccaaagtagacg 32665608  T
Q  283 gcacatgaataggaccccaaatatcagaatgg 314  Q
     |||| || |||||||||||| ||||||||||    
T  32665609 acacacgactaggaccccaaacatcagaatgg 32665640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 262
Target Start/End: Complemental strand, 19538 - 19285
Alignment:
Q  9 tcagcgacaccattttgttgtggtgtgtgcggacaactagactgatgtgtaataccataagaaatnnnnnnngagttgaattgtgcataaaaatattctt 108  Q
    |||||||| |||||||||||||||||||| |||||||| || |||||| | |||||| |||||         ||||||||| ||||| ||||||||||||    
T  19538 tcagcgacgccattttgttgtggtgtgtggggacaactggattgatgtatgataccaaaagaagccatgaaagagttgaatggtgcagaaaaatattctt 19439  T
Q  109 tggcattgtcacttctcaaaactttgattgttttcccaaattgagtctttatctatgaacaaaaagtcgtaaatgcaccacataattatgaacgatcctt 208  Q
    | ||||||||||| | ||||| |   |||  ||| ||||||||  ||||||||| ||||||||| |||  ||| |||||| |||| |  ||||| |||||    
T  19438 ttgcattgtcactccgcaaaattcgaattccttttccaaattggttctttatctctgaacaaaatgtctgaaaggcaccaaataaatgagaacggtcctt 19339  T
Q  209 caataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataata 262  Q
    || ||| || |||||  | ||||  || |||||||| ||| |||| ||||||||    
T  19338 cagtaaagtgatccagatgcatctagaaaaatcatcaatgaaagtgacataata 19285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 290
Target Start/End: Complemental strand, 28123019 - 28122947
Alignment:
Q  219 atccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcct-aaattagagggcacatga 290  Q
    |||||||| |||| ||||| |||||| | | || ||||||| |||||||||||| |||||||| |||||||||    
T  28123019 atccaagtgcatcttgagagatcatcaaggaaattaacatagtacttgtatcctgaaattagaaggcacatga 28122947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1290 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold1290
Description:

Target: scaffold1290; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 191 - 280
Target Start/End: Complemental strand, 2153 - 2064
Alignment:
Q  191 taattatgaacgatccttcaataaggttatccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattaga 280  Q
    ||||||||||||||||||||||||||| ||||| || ||||  ||||||||||| ||| |||| |||||||| |||||||| ||| ||||    
T  2153 taattatgaacgatccttcaataaggtgatccaggtgcatctagagaaatcatcaatgaaagtgacataatatttgtatcccaaagtaga 2064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 221 - 325
Target Start/End: Complemental strand, 32113 - 32009
Alignment:
Q  221 ccaagtacatcgtgagaaatcatcgatggaagtaacataatacttgtatcctaaattagagggcacatgaataggaccccaaatatcagaatggacaata 320  Q
    ||||||||||| |||||||||||| ||  ||||||||||||||||||| |||||  |||| || | | || |||||||||||| |||| |||| |||| |    
T  32113 ccaagtacatcttgagaaatcatcaataaaagtaacataatacttgtaacctaaggtagaaggaaaacgactaggaccccaaacatcaaaatgaacaaca 32014  T
Q  321 tcaaa 325  Q
    |||||    
T  32013 tcaaa 32009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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