View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3572_low_7 (Length: 401)
Name: NF3572_low_7
Description: NF3572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3572_low_7 |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Original strand, 43973679 - 43974067
Alignment:
| Q |
13 |
gtttctttggattctctcatgaaaccccttctgatagattgatgaactctttaggtagttttcatggaaaagactttgtcagtgtttttaggttcaaaac |
112 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43973679 |
gtttctttggattctcccatgaaaccccttctgatagattgatgaactctttaggtagttttcatggaaaagactttgtcagtgtttttaggttcaaaac |
43973778 |
T |
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| Q |
113 |
ttggtggtctagtcaatggataggaaattctggatctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgtt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43973779 |
ttggtggtctagtcaatggataggaaattctggatctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgtt |
43973878 |
T |
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| Q |
213 |
gtcattcctgtcattgaaaaaagttttaggtctgcgcttcatcctggttctgatgaccatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaag |
312 |
Q |
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| T |
43973879 |
gtcattcctgtcattgaaaaaagttttaggtctgcgcttcatcctggttctgatgaccatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaag |
43973978 |
T |
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| Q |
313 |
catcgagtttcgatgcgattgcttatgttcatgtgagtgaaaatccttatactttgatgaatgaagcttatagtgctattagggttcat |
401 |
Q |
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| T |
43973979 |
catcgagtttcgatgcgattgcttatgttcatgtgagtgaaaatccttatactttgatgaatgaagcttatagtgctattagggttcat |
43974067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 401
Target Start/End: Complemental strand, 43564923 - 43564535
Alignment:
| Q |
13 |
gtttctttggattctctcatgaaaccccttctgatagattgatgaactctttaggtagttttcatggaaaagactttgtcagtgtttttaggttcaaaac |
112 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||| ||| |||| ||||||||||| |
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| T |
43564923 |
gtttctttggattctctcatgaaaccccgtctgatagattgatgaattcattaggtagtttcaatggaaaagactttgtgagtattttcaggttcaaaac |
43564824 |
T |
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| Q |
113 |
ttggtggtctagtcaatggataggaaattctggatctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgtt |
212 |
Q |
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|||||||| | ||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43564823 |
gtggtggtccactcaatgggtaggaaaatctggttctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgtt |
43564724 |
T |
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| Q |
213 |
gtcattcctgtcattgaaaaaagttttaggtctgcgcttcatcctggttctgatgaccatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaag |
312 |
Q |
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||||||||| | ||||||||| |||||||||| || ||| |||||||||| |||||||||| |||||||||||||||||||| ||||| | ||| || |
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| T |
43564723 |
gtcattcctataattgaaaaaggttttaggtcagcactttttcctggttctaatgaccatgttatgatttgtgctgaaagtggttcaaccaaggtggtag |
43564624 |
T |
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| Q |
313 |
catcgagtttcgatgcgattgcttatgttcatgtgagtgaaaatccttatactttgatgaatgaagcttatagtgctattagggttcat |
401 |
Q |
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||| |||||| |||| ||||||||||||||| | ||||||||||||| ||||||||| ||||||||||||| ||| ||||||||| |
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| T |
43564623 |
aatctagtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatagtgttataagggttcat |
43564535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 401
Target Start/End: Complemental strand, 36432878 - 36432490
Alignment:
| Q |
13 |
gtttctttggattctctcatgaaaccccttctgatagattgatgaactctttaggtagttttcatggaaaagactttgtcagtgtttttaggttcaaaac |
112 |
Q |
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|||||||||||||||| |||||||||| ||||||||||| ||||| || ||||||||||| |||| | | ||||||||||| |||||||||||||||| |
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| T |
36432878 |
gtttctttggattctccaatgaaaccccatctgatagattcatgaattcattaggtagtttcaatggtagaaactttgtcagtatttttaggttcaaaac |
36432779 |
T |
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| Q |
113 |
ttggtggtctagtcaatggataggaaattctggatctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgtt |
212 |
Q |
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||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||| |
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| T |
36432778 |
ttggtggtctactcaatggataggaagatctggttctgatttgcaaatggaaactcaatggattctttttgagattcctgaaatcagatcctatgctgtg |
36432679 |
T |
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| Q |
213 |
gtcattcctgtcattgaaaaaagttttaggtctgcgcttcatcctggttctgatgaccatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaag |
312 |
Q |
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|||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||| |||||| | ||||||| |
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| T |
36432678 |
atcattcctatcattgaaaacggttttaggtctgcacttcatcctggttctgatgaccattttatgatttgtgctgagagtggttcaacaaaggtgaaag |
36432579 |
T |
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| Q |
313 |
catcgagtttcgatgcgattgcttatgttcatgtgagtgaaaatccttatactttgatgaatgaagcttatagtgctattagggttcat |
401 |
Q |
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||| ||||||| |||| ||||||||||||||| | ||||||||||||| ||||||||| ||||||||||||||| | ||||||||| |
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| T |
36432578 |
cattgagtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatagtgctttgagggttcat |
36432490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 8952238 - 8952456
Alignment:
| Q |
13 |
gtttctttggattctctcatgaaaccccttctgatagattgatgaactctttaggtagttttcatggaaaagactttgtcagtgtttttaggttcaaaac |
112 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||||| |
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| T |
8952238 |
gtttctttggattctcccatgaaaccccttctgatagattgatgaactctttaggtagttttaatggaaaa-actttgttagtgtttttaggctcaaaac |
8952336 |
T |
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| Q |
113 |
ttggtggtctagtcaatggataggaaattctggatctgatttacaaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgtt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8952337 |
ttggtggtctagtcaatggataggaaattctggatctgatttacaaatggaaaatcaatggattctcattgatattcctgaaatcaaatcctatgttgtt |
8952436 |
T |
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| Q |
213 |
gtcattcctgtcattgaaaa |
232 |
Q |
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||||||||| ||| |||||| |
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| T |
8952437 |
gtcattcctatcaatgaaaa |
8952456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 8952458 - 8952513
Alignment:
| Q |
268 |
accatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaagcatcgagtttc |
323 |
Q |
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| T |
8952458 |
accatgtcatgatttgtgctgaaagtagttcaacacaagtaaaagcattgagtttc |
8952513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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