View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3573_high_10 (Length: 328)
Name: NF3573_high_10
Description: NF3573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3573_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 39431456 - 39431774
Alignment:
| Q |
1 |
aaacttagtcatacgaacatagaaccatggaatctagtaaattaaacattttataaatgaactccggattactgacaacacatgctcttcttagggattt |
100 |
Q |
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| T |
39431456 |
aaacttggtcatacgaacatagaaccatggaatctagtaaattaaacattttataaatgaactccggattactgacaacacatgctcttcttagggattt |
39431555 |
T |
|
| Q |
101 |
cttgtgcaggaccaggaacaataatcttcttgccggacagagatgctgagttgccatttccctgattctcatcagcagccaggttcttcttgttgacaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39431556 |
cttgtgcaggaccaggaacaataatcttcttgccggacagagatgctgagttgccatttccctgattctcatcagcagccaggttcttcttgttgacaat |
39431655 |
T |
|
| Q |
201 |
gttaaatatttctgtcaaaacagtcatgaaggccgtctcaacattagttgcttgcagcgcagaggtctctaagaaaaataagccttctttctcagcaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39431656 |
gttaaatatttctgtcaaaacagtcatgaaggccgtctcaacattagttgcttgcagcgcagaggtctctaagaaaaataagccttctttctcagcaaat |
39431755 |
T |
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| Q |
301 |
tcttttgcatcctctgtgg |
319 |
Q |
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||||||||||||||||||| |
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| T |
39431756 |
tcttttgcatcctctgtgg |
39431774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 93 - 319
Target Start/End: Original strand, 37625007 - 37625233
Alignment:
| Q |
93 |
agggatttcttgtgcaggaccaggaacaataatcttcttgccggacagagatgctgagttgccatttccctgattctcatcagcagccaggttcttcttg |
192 |
Q |
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||||||||| ||||||||||| || | |||||| |||| ||| | | |||||||||||| |||||||||||| | ||||||||||| |||||||||||| |
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| T |
37625007 |
agggatttcctgtgcaggacctgggataataattttctggcccaataaagatgctgagttcccatttccctgactttcatcagcagctaggttcttcttg |
37625106 |
T |
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| Q |
193 |
ttgacaatgttaaatatttctgtcaaaacagtcatgaaggccgtctcaacattagttgcttgcagcgcagaggtctctaagaaaaataagccttctttct |
292 |
Q |
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||||||||||| | |||||||||||||| ||||| |||| | ||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
37625107 |
ttgacaatgttgtagatttctgtcaaaactgtcataaaggatgcttcaacattagttgcttgcaatgctgaggtctctaagaaaaataagccttctttct |
37625206 |
T |
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| Q |
293 |
cagcaaattcttttgcatcctctgtgg |
319 |
Q |
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||||||| ||||||||||||||||||| |
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| T |
37625207 |
cagcaaactcttttgcatcctctgtgg |
37625233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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