View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3573_high_14 (Length: 318)
Name: NF3573_high_14
Description: NF3573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3573_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 5 - 270
Target Start/End: Original strand, 8959552 - 8959817
Alignment:
| Q |
5 |
gagaagcaaaggacacaaagaagctatgatttcactggtgttgtatcttggtttgctgccaaatgtgatgtcattcttctcctattcgatccacataagc |
104 |
Q |
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| T |
8959552 |
gagaaacaaaggacacaaagaagctatgatttcactggtgttgtatcttggtttgctgccaaatgtgatgtcattcttctcctattcgatccacataagc |
8959651 |
T |
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| Q |
105 |
ttgacatcagtgatgaattcaaacgtgtaatttcatctttacgtggcaacgaggacaagatccgtgtggttttgaataagtcagaccaagttgatactca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8959652 |
ttgacatcagtgatgaattcaaacgtgtaatttcatctttacgtggcaacgaggacaagatccgtgtggttttgaataagtcagaccaagttgatactca |
8959751 |
T |
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| Q |
205 |
acaagtatgacacataaataagattgaactatttttttactcataatttctataattgtgtgctaa |
270 |
Q |
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| T |
8959752 |
acaagtatgacacataaacaagattgaactatttttttactcataatttctataattgtgtgctaa |
8959817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 55564973 - 55565178
Alignment:
| Q |
11 |
caaaggacacaaagaagctatgatttcactggtgttgtatcttggtttgctgccaaatgtgatgtcattcttctcctattcgatccacataagcttgaca |
110 |
Q |
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| T |
55564973 |
caaaggactcaacgaagttatgatttcactggtgttatatcgtggtttgctgcgaagtgtgatttgattcttctcctatttgatcctcacaaactcgaca |
55565072 |
T |
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| Q |
111 |
tcagtgatgaattcaaacgtgtaatttcatctttacgtggcaacgaggacaagatccgtgtggttttgaataagtcagaccaagttgatactcaacaagt |
210 |
Q |
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| T |
55565073 |
tcagtgatgaatttaaacgagtgatctactctctacgcggtcatgatgacaaaatacgcgttgtgttgaataaggcagaccaaatcgatactcagcaagt |
55565172 |
T |
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| Q |
211 |
atgaca |
216 |
Q |
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| |||| |
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| T |
55565173 |
aagaca |
55565178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 21500547 - 21500588
Alignment:
| Q |
170 |
gtggttttgaataagtcagaccaagttgatactcaacaagta |
211 |
Q |
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| T |
21500547 |
gtggttttgaacaaggcagaccaagttgatactcaacaagta |
21500588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 211
Target Start/End: Original strand, 40922018 - 40922176
Alignment:
| Q |
53 |
tggtttgctgccaaatgtgatgtcattcttctcctattcgatccacataagcttgacatcagtgatgaattcaaacgtgtaatttcatctttacgtggca |
152 |
Q |
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||||||||||| || |||||| | || || || || || ||||| || |||||||| || || ||||| ||||| || || || ||||| ||||| || |
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| T |
40922018 |
tggtttgctgctaagtgtgatttgatactcctactgtttgatcctcacaagcttgatattagcgatgagttcaatcgcgtgatatcatccttacggggac |
40922117 |
T |
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| Q |
153 |
acgaggacaagatccgtgtggttttgaataagtcagaccaagttgatactcaacaagta |
211 |
Q |
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| T |
40922118 |
atgatgacaaaattcgagtggttttgaacaaggcagatcaagttgatactcagcaagta |
40922176 |
T |
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