View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3573_high_16 (Length: 314)

Name: NF3573_high_16
Description: NF3573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3573_high_16
NF3573_high_16
[»] chr7 (4 HSPs)
chr7 (1-111)||(20478402-20478512)
chr7 (1-104)||(56730-56833)
chr7 (243-286)||(20478635-20478678)
chr7 (243-285)||(57056-57098)
[»] chr6 (4 HSPs)
chr6 (1-111)||(32455545-32455655)
chr6 (1-111)||(13613195-13613305)
chr6 (243-286)||(32455378-32455421)
chr6 (243-285)||(13612937-13612979)
[»] chr1 (8 HSPs)
chr1 (1-111)||(1442880-1442990)
chr1 (5-110)||(47012737-47012842)
chr1 (1-111)||(33602258-33602367)
chr1 (1-111)||(9121335-9121432)
chr1 (243-286)||(1443114-1443157)
chr1 (243-286)||(9121169-9121212)
chr1 (243-286)||(47012569-47012612)
chr1 (243-285)||(33602000-33602042)
[»] chr8 (5 HSPs)
chr8 (1-111)||(15306157-15306267)
chr8 (1-111)||(15486526-15486636)
chr8 (1-111)||(27406571-27406681)
chr8 (243-286)||(15306484-15306527)
chr8 (243-286)||(15486853-15486896)
[»] chr2 (6 HSPs)
chr2 (1-111)||(24207725-24207835)
chr2 (1-111)||(37020868-37020978)
chr2 (5-111)||(6785655-6785761)
chr2 (243-286)||(6785395-6785438)
chr2 (243-286)||(24207465-24207508)
chr2 (243-286)||(37021102-37021145)
[»] chr5 (6 HSPs)
chr5 (1-110)||(40780910-40781019)
chr5 (5-111)||(29621435-29621541)
chr5 (1-111)||(42473261-42473371)
chr5 (1-110)||(32135462-32135571)
chr5 (243-286)||(29621267-29621310)
chr5 (243-286)||(40781144-40781187)
[»] chr3 (1 HSPs)
chr3 (1-104)||(19987257-19987360)
[»] chr4 (1 HSPs)
chr4 (4-97)||(35404077-35404170)


Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 20478402 - 20478512
Alignment:
Q  1 tcaccggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20478402 tcaccggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattaaactttgttttccattcactcttgttc 20478501  T
Q  101 gtttgtccctg 111  Q
    |||||||||||    
T  20478502 gtttgtccctg 20478512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 56730 - 56833
Alignment:
Q  1 tcaccggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56730 tcaccggcgatcatccttggaaaagattcggttttgaagtcagatttcgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttc 56829  T
Q  101 gttt 104  Q
    ||||    
T  56830 gttt 56833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 20478635 - 20478678
Alignment:
Q  243 aacgaaatcacgtcctgatttaaacaagttataaaaagggtttg 286  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  20478635 aacgaaatcacgtcctgatttaaacaaattataaaaagggtttg 20478678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 57056 - 57098
Alignment:
Q  243 aacgaaatcacgtcctgatttaaacaagttataaaaagggttt 285  Q
    ||||||||||| ||||||||||||||| |||||||||||||||    
T  57056 aacgaaatcacatcctgatttaaacaatttataaaaagggttt 57098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 32455655 - 32455545
Alignment:
Q  1 tcaccggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttc 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32455655 tcaccggcgatcatccttggaaaagattcgattttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttc 32455556  T
Q  101 gtttgtccctg 111  Q
    |||||||||||    
T  32455555 gtttgtccctg 32455545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 13613305 - 13613195
Alignment:
Q  1 tcaccggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttc 100  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||   |||||||||||||||||||||||||| |||||     
T  13613305 tcaccggcgatcaaccttggaaaatattcggttttgaagtcagatttcgtggtttgtcaaggtaacaccattcaactttgttttccattcacttttgttt 13613206  T
Q  101 gtttgtccctg 111  Q
    |||| ||||||    
T  13613205 gtttctccctg 13613195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 32455421 - 32455378
Alignment:
Q  243 aacgaaatcacgtcctgatttaaacaagttataaaaagggtttg 286  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  32455421 aacgaaatcacgtcctgatttaaacaaattataaaaagggtttg 32455378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 13612979 - 13612937
Alignment:
Q  243 aacgaaatcacgtcctgatttaaacaagttataaaaagggttt 285  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  13612979 aacgaaatcacgtcctgatttaaacaatttataaaaagggttt 13612937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 1442880 - 1442990
Alignment:
Q  1 tcaccggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttc 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1442880 tcaccggcgatcatccttgcaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttc 1442979  T
Q  101 gtttgtccctg 111  Q
    |||||||||||    
T  1442980 gtttgtccctg 1442990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 47012842 - 47012737
Alignment:
Q  5 cggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgttt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47012842 cggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccatttaactttgttttccattcactcttgttcgttt 47012743  T
Q  105 gtccct 110  Q
    | ||||    
T  47012742 gaccct 47012737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 33602367 - 33602258
Alignment:
Q  1 tcaccggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttc 100  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||| ||    
T  33602367 tcaccgacgatcatccttggaaaagattcagttttgaagtcagatttcgtggtttgtcaaggtaacgccattcaactttgttttccattcactcttg-tc 33602269  T
Q  101 gtttgtccctg 111  Q
    |||| ||||||    
T  33602268 gtttctccctg 33602258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 9121432 - 9121335
Alignment:
Q  1 tcaccggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttc 100  Q
    ||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9121432 tcaccggcgatcatccttggaaaagattcggt-------------tttgtggtttgtcaaggtatagccattaaactttgttttccattcactcttgttc 9121346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 1443114 - 1443157
Alignment:
Q  243 aacgaaatcacgtcctgatttaaacaagttataaaaagggtttg 286  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  1443114 aacgaaatcacgtcctgatttaaacaaattataaaaagggtttg 1443157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 9121212 - 9121169
Alignment:
Q  243 aacgaaatcacgtcctgatttaaacaagttataaaaagggtttg 286  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  9121212 aacgaaatcacgtcctgatttaaacaaattataaaaagggtttg 9121169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 47012612 - 47012569
Alignment:
Q  243 aacgaaatcacgtcctgatttaaacaagttataaaaagggtttg 286  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  47012612 aacgaaatcacgtcctgatttaaacaaattataaaaagggtttg 47012569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 33602042 - 33602000
Alignment:
Q  243 aacgaaatcacgtcctgatttaaacaagttataaaaagggttt 285  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  33602042 aacgaaatcacgtcctgatttaaacaatttataaaaagggttt 33602000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 15306157 - 15306267
Alignment:
Q  1 tcaccggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15306157 tcaccggcgatcatccttggaaaagattcggttttgaagtcagatttcgtggtttgtcaaggtatagacattcaactttgttttccattcactcttgttc 15306256  T
Q  101 gtttgtccctg 111  Q
    |||||||||||    
T  15306257 gtttgtccctg 15306267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 15486526 - 15486636
Alignment:
Q  1 tcaccggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15486526 tcaccggcgatcatccttggaaaagattcggttttgaagtcagatttcgtggtttgtcaaggtatagacattcaactttgttttccattcactcttgttc 15486625  T
Q  101 gtttgtccctg 111  Q
    |||||||||||    
T  15486626 gtttgtccctg 15486636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 27406681 - 27406571
Alignment:
Q  1 tcaccggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27406681 tcaccggcgatcatccttggaaaagattcggttttgaagtcagatttcgtggtttgtcaaggtatagacattcaactttgttttccattcactcttgttc 27406582  T
Q  101 gtttgtccctg 111  Q
    |||| ||||||    
T  27406581 gtttatccctg 27406571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 15306484 - 15306527
Alignment:
Q  243 aacgaaatcacgtcctgatttaaacaagttataaaaagggtttg 286  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  15306484 aacgaaatcacgtcctgatttaaacaatttataaaaagggtttg 15306527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 15486853 - 15486896
Alignment:
Q  243 aacgaaatcacgtcctgatttaaacaagttataaaaagggtttg 286  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  15486853 aacgaaatcacgtcctgatttaaacaatttataaaaagggtttg 15486896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 24207835 - 24207725
Alignment:
Q  1 tcaccggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24207835 tcaccggcgatcatccttggaaaagattcggttttgaagtcagatttcgtggtttgtcaaggtatagacattcaactttgttttccattcactcttgttc 24207736  T
Q  101 gtttgtccctg 111  Q
    |||||||||||    
T  24207735 gtttgtccctg 24207725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 37020868 - 37020978
Alignment:
Q  1 tcaccggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttc 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37020868 tcaccggcgatcatccttggaaaagattcggttttgaagttagattttgtggtttgtcaaggtatagccattaaactttgttttccattcactcttgttc 37020967  T
Q  101 gtttgtccctg 111  Q
    |||||| ||||    
T  37020968 gtttgttcctg 37020978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 6785761 - 6785655
Alignment:
Q  5 cggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgttt 104  Q
    ||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6785761 cggcgatcatccttggaaaagattcagttttcaagtcagatttcgtggtttgtcaaggtatagacattcaactttgttttccattcactcttgttcgttt 6785662  T
Q  105 gtccctg 111  Q
    |||||||    
T  6785661 gtccctg 6785655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 6785438 - 6785395
Alignment:
Q  243 aacgaaatcacgtcctgatttaaacaagttataaaaagggtttg 286  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  6785438 aacgaaatcacgtcctgatttaaacaatttataaaaagggtttg 6785395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 24207508 - 24207465
Alignment:
Q  243 aacgaaatcacgtcctgatttaaacaagttataaaaagggtttg 286  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  24207508 aacgaaatcacgtcctgatttaaacaatttataaaaagggtttg 24207465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 37021102 - 37021145
Alignment:
Q  243 aacgaaatcacgtcctgatttaaacaagttataaaaagggtttg 286  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  37021102 aacgaaatcacgtcctgatttaaacaaattataaaaagggtttg 37021145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 40780910 - 40781019
Alignment:
Q  1 tcaccggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40780910 tcaccggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttcctttcactcttgttc 40781009  T
Q  101 gtttgtccct 110  Q
    ||||| ||||    
T  40781010 gtttgaccct 40781019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 29621541 - 29621435
Alignment:
Q  5 cggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttcgttt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  29621541 cggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattaaactttgttttccattcactcttattcgttt 29621442  T
Q  105 gtccctg 111  Q
    |||||||    
T  29621441 gtccctg 29621435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 42473371 - 42473261
Alignment:
Q  1 tcaccggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||| |||||||||||||  ||||||    
T  42473371 tcaccggcgatcatccttggaaaagattcggttttgaagtcagatttcgtggtttgtcaaggtaacgccattcaacttcgttttccattcaccgttgttc 42473272  T
Q  101 gtttgtccctg 111  Q
    |||| ||||||    
T  42473271 gtttatccctg 42473261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 32135571 - 32135462
Alignment:
Q  1 tcaccggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttc 100  Q
    |||||||| |||| |||| |||||||| ||||||||||||||| |||| |||||||||||||||  |||||||||||| |||||||||||||||||||||    
T  32135571 tcaccggcaatcaaccttagaaaagatacggttttgaagtcagtttttttggtttgtcaaggtaacgccattcaacttcgttttccattcactcttgttc 32135472  T
Q  101 gtttgtccct 110  Q
    |||| |||||    
T  32135471 gtttctccct 32135462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 29621310 - 29621267
Alignment:
Q  243 aacgaaatcacgtcctgatttaaacaagttataaaaagggtttg 286  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  29621310 aacgaaatcacgtcctgatttaaacaaattataaaaagggtttg 29621267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 40781144 - 40781187
Alignment:
Q  243 aacgaaatcacgtcctgatttaaacaagttataaaaagggtttg 286  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  40781144 aacgaaatcacgtcctgatttaaacaaattataaaaagggtttg 40781187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 19987360 - 19987257
Alignment:
Q  1 tcaccggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttgttc 100  Q
    |||||||||||||| ||||||||||||| | |||||||||||||||| ||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  19987360 tcaccggcgatcattcttggaaaagatttgattttgaagtcagatttcgtggtttgtcaaggtaacaccattcaactttgttttccattcactcttgttc 19987261  T
Q  101 gttt 104  Q
    ||||    
T  19987260 gttt 19987257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 35404170 - 35404077
Alignment:
Q  4 ccggcgatcatccttggaaaagattcggttttgaagtcagattttgtggtttgtcaaggtatagccattcaactttgttttccattcactcttg 97  Q
    |||||||||| ||||||||||||| ||||||||||||||||||  ||||||||||||||||  | |||||||||| ||||||||||||||||||    
T  35404170 ccggcgatcaaccttggaaaagatacggttttgaagtcagattacgtggtttgtcaaggtaacgacattcaacttcgttttccattcactcttg 35404077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University