View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3573_high_19 (Length: 300)
Name: NF3573_high_19
Description: NF3573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3573_high_19 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 15 - 300
Target Start/End: Original strand, 1444536 - 1444818
Alignment:
| Q |
15 |
ggagaagagccaaactaaaattgataatcatttattctgtttgataacctgctactaatacttcttccctttatcaaaagccgattttcacattcaaggt |
114 |
Q |
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| T |
1444536 |
ggagaagagccaaactaaaattgataatcatttattctgtttgataacctgctactaatacttcttccctttatcaaaagccgattttcacattcaaggt |
1444635 |
T |
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| Q |
115 |
ggtggccgaaggtataatggctgctttaaaattttagtgtcactcaagttatgttcatttaaagcatgttacctgtgttttcttgtaacttgtacttgca |
214 |
Q |
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| T |
1444636 |
ggtggccgaaggttt---ggctgctttaaaattttagtgtcactcaagttatgttcatttaaagcatgttacctgtgttttcttgtaacttgtacttgca |
1444732 |
T |
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| Q |
215 |
taatactttgaaaattatttcctctagcttttatggtgtacactgaacataaaaccatgtctttctttacaactgtcttaatcttt |
300 |
Q |
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| T |
1444733 |
taatattttgaaaattatttcctctagcttttatggtgtacactgaacataaaaccatgtctttctttacaactgtcttaatcttt |
1444818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 1483911 - 1484117
Alignment:
| Q |
13 |
taggagaagagccaaactaaaattgataatcatttattctgtttgataacctgctactaatacttcttcccttt----atcaaaagccgattttcacatt |
108 |
Q |
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| T |
1483911 |
taggtgaagagccaaaccaaaattgataatcaattattctgtttgataacctgctactaatgcatcttccgtttataaatcaaaatgagagtttcacgtt |
1484010 |
T |
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| Q |
109 |
caaggtggtggccgaaggtataatggctgctttaaaattt--tagtgtcactcaagttatgt-tcatttaaagcatgttacctgtgttttcttgtaactt |
205 |
Q |
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| T |
1484011 |
caaggtggtggccaaaggtttaatggctgctttaaaatttcatagtgtcacacgcattctgtgtaaatcaaagcattttacctgtgtttcctagtaactt |
1484110 |
T |
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| Q |
206 |
gtacttg |
212 |
Q |
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| T |
1484111 |
gtacttg |
1484117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 1484173 - 1484214
Alignment:
| Q |
259 |
gaacataaaaccatgtctttctttacaactgtcttaatcttt |
300 |
Q |
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| T |
1484173 |
gaacataaaaccctgtctttctttacaagtgtcttattcttt |
1484214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 19153562 - 19153596
Alignment:
| Q |
47 |
tattctgtttgataacctgctactaatacttcttc |
81 |
Q |
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| T |
19153562 |
tattctgtttgataacctgctactaattcttcttc |
19153596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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