View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3573_high_1_N (Length: 376)
Name: NF3573_high_1_N
Description: NF3573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3573_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 28536452 - 28536805
Alignment:
| Q |
1 |
gtataaagtaatgctctgaaatttcaaaaccaaaaaccagactcgagagtatgataatgtgtggttgatagatgaaacggctgaggttgggcgtgcgaag |
100 |
Q |
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| T |
28536452 |
gtataaagtaatgctctgaaatttcaaaaccaaaaaccagactcgagagtatgataatgtgtggttgatagatgaaacggctgacgttgagcgtgcgaag |
28536551 |
T |
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| Q |
101 |
aaagcaagaaggaagaacgacacaaaaagtttgtagatgtcatatagtactttcattctcctcaacacaatgaaacatattcaagcttgtcaaataaaaa |
200 |
Q |
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| T |
28536552 |
aacgcaagaaggaagaacgacacaaaaagtttgtagatgtcatatagtactttcattctcctcaacacaataaaacatattcaagcttgtcaaataaaaa |
28536651 |
T |
|
| Q |
201 |
tttccactgaattaaccaggaaacattacgtgtttcgaaactcgatccactctactatgtataattagtaattaccatgaaagatataaggttggccgct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536652 |
tttccactgaattaaccaggaaacattacgtgtttcgaaactggatccactctactatgtataattagtaattaccatgaaagatataaggttggccgct |
28536751 |
T |
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| Q |
301 |
ttgaaattccatatgaatattcaaaccaaattcctatatatttgtcattgatga |
354 |
Q |
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| T |
28536752 |
ttgaaattccatatgaatattcaaaccaaattcctgtatatttgtcattgatga |
28536805 |
T |
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