View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3573_high_3 (Length: 364)

Name: NF3573_high_3
Description: NF3573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3573_high_3
NF3573_high_3
[»] chr6 (8 HSPs)
chr6 (212-360)||(13910592-13910741)
chr6 (46-140)||(13910823-13910915)
chr6 (46-139)||(14109435-14109527)
chr6 (52-146)||(14083622-14083715)
chr6 (61-139)||(13474016-13474091)
chr6 (293-333)||(14024263-14024303)
chr6 (292-333)||(14109243-14109284)
chr6 (292-342)||(14106474-14106524)


Alignment Details
Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 212 - 360
Target Start/End: Complemental strand, 13910741 - 13910592
Alignment:
Q  212 atgatagtgtaagctgtatatatgttctaaagtta-tttttatgatatgatatttcaagtttgaaaattttaagaaaaaattattttagactttatatct 310  Q
    ||||||||||||||| |||||| |||| ||||||| ||||| ||||||  ||||||| |||||||| || ||| ||||   |||||||||||||||||||    
T  13910741 atgatagtgtaagctttatataggttcaaaagttaatttttgtgatatagtatttcatgtttgaaagttgtaaaaaaattatattttagactttatatct 13910642  T
Q  311 aaagtggttaacacttaaactatgatacagggaatagtgtgttgatgatg 360  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13910641 aaagtggttaacacttaaactatgatacagggaatagtgtgttggtgatg 13910592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 46 - 140
Target Start/End: Complemental strand, 13910915 - 13910823
Alignment:
Q  46 taataaatcattgtagtatctaaaagtatatttctttacatataatttctattaaaaaactgttcatttttagtctctatagtttcttaaataat 140  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||| | |||||||||||||||||  |||||| |||||||||    
T  13910915 taatatatcattgtagtatctaaaagtatatttttttacatataatatctattaaaatattgttcatttttagtctc--tagtttattaaataat 13910823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 14109527 - 14109435
Alignment:
Q  46 taataaatcattgtagtatctaaaagtatatttctttacatataatttctattaaaaaactgttcatttttagtctctatagtttcttaaataa 139  Q
    ||||| |||||| |||||||||||| ||||| | ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||    
T  14109527 taatatatcattatagtatctaaaaatatatat-tttacatataatttctattgaaatactgttcatttttagtctctacagtttcttaaataa 14109435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 52 - 146
Target Start/End: Complemental strand, 14083715 - 14083622
Alignment:
Q  52 atcattgtagtatctaaaagtatatttctttacatataatttctattaaaaaactgttcatttttagtctctatagtttcttaaataatgcgttc 146  Q
    |||||| || ||||||||| ||||||| ||||| ||| ||||||||| ||| ||||||||||||||||||||| ||||| |||||||||| ||||    
T  14083715 atcattatattatctaaaaatatattt-tttacttatcatttctattgaaatactgttcatttttagtctctacagttttttaaataatgtgttc 14083622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 13474016 - 13474091
Alignment:
Q  61 gtatctaaaagtatatttctttacatataatttctattaaaaaactgttcatttttagtctctatagtttcttaaataa 139  Q
    |||||||||| ||||| | |||||| ||||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  13474016 gtatctaaaaatatatat-tttacacataatttctattaaaa--ctgttcatctttagtctctatagtttcttaaataa 13474091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 14024303 - 14024263
Alignment:
Q  293 attttagactttatatctaaagtggttaacacttaaactat 333  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  14024303 attttagactttatatctaaagtggttaatacttaaactat 14024263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 292 - 333
Target Start/End: Complemental strand, 14109284 - 14109243
Alignment:
Q  292 tattttagactttatatctaaagtggttaacacttaaactat 333  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  14109284 tattttagactttatatataaagaggttaacacttaaactat 14109243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 342
Target Start/End: Complemental strand, 14106524 - 14106474
Alignment:
Q  292 tattttagactttatatctaaagtggttaacacttaaactatgatacaggg 342  Q
    ||||||||||| ||||||||| |||||||||||| ||||||| ||| ||||    
T  14106524 tattttagactatatatctaaggtggttaacactcaaactattatataggg 14106474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University