View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3573_high_4 (Length: 355)
Name: NF3573_high_4
Description: NF3573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3573_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 2 - 345
Target Start/End: Complemental strand, 30692411 - 30692068
Alignment:
| Q |
2 |
gcatcactttctttaccaataccactatatgtctgaataaaatttctaatatctttttctaagaatggtaaatttcctgtgcccgttcttttctctaact |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30692411 |
gcatcactttctttaccaataccactatatgactgaataaaatttctaatatctttttctaagaatggtaaatttcctgtgcccgttcttttctctaact |
30692312 |
T |
|
| Q |
102 |
caagcactctcattataatacttacagagcaaccagctttagataataatagtatgcgattttgatcaacaattggaatgttacgataagcaggaagaaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30692311 |
caagcactctcattataatacttacagagcaaccaactttagataataatagtatgtgatcttgatcaacaattggaatgttacgataagcaggaagaaa |
30692212 |
T |
|
| Q |
202 |
tcgaacctctttgtcatccaataactcgtggttgtgagaattgttgaaatatttaaccacccatttttcctcaaagccaattgttctcttattaactacc |
301 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30692211 |
tcgaacctctttgttatccaataactcgtggttgtgagaattgttgaaatatttaaccacccattttttctcaaagccaattgttctcttattaactacc |
30692112 |
T |
|
| Q |
302 |
atctttgcaccacaatcacatcttgaagattttcgtttcctttg |
345 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
30692111 |
atctttgcaccataatcacatcttgaagattttcgtttcctttg |
30692068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 2 - 345
Target Start/End: Complemental strand, 30725348 - 30725005
Alignment:
| Q |
2 |
gcatcactttctttaccaataccactatatgtctgaataaaatttctaatatctttttctaagaatggtaaatttcctgtgcccgttcttttctctaact |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30725348 |
gcatcactttctttaccaataccactatatgactgaataaaatttctaatatctttttctaagaatggtaaatttcctgtgcccgttcttttctctaact |
30725249 |
T |
|
| Q |
102 |
caagcactctcattataatacttacagagcaaccagctttagataataatagtatgcgattttgatcaacaattggaatgttacgataagcaggaagaaa |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30725248 |
caagcactctcattataatacttacagagcaaccaactttagataataatagtatgtgatcttgatcaacaattggaatgttacgataagcaggaagaaa |
30725149 |
T |
|
| Q |
202 |
tcgaacctctttgtcatccaataactcgtggttgtgagaattgttgaaatatttaaccacccatttttcctcaaagccaattgttctcttattaactacc |
301 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
30725148 |
tcgaacctctttgttatccaataactcgtggttgtgagaattgttgaaatatttaaccacccattttttctcaaagacaattgttctcttattaactacc |
30725049 |
T |
|
| Q |
302 |
atctttgcaccacaatcacatcttgaagattttcgtttcctttg |
345 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30725048 |
atctttgcaccataatcacatcttgaagattttcgtttcctttg |
30725005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 2 - 345
Target Start/End: Complemental strand, 3268992 - 3268649
Alignment:
| Q |
2 |
gcatcactttctttaccaataccactatatgtctgaataaaatttctaatatctttttctaagaatggtaaatttcctgtgcccgttcttttctctaact |
101 |
Q |
| |
|
|||||| ||||||||||||||| ||| | ||||||||||||| ||||||||| |||| || |||| ||| ||||| | || |||||||||||| |
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|
| T |
3268992 |
gcatcattttctttaccaatacaacttcgggattgaataaaatttcgaatatctttatctagaaaaggtagattgcctgtaactatttttttctctaact |
3268893 |
T |
|
| Q |
102 |
caagcactctcattataatacttacagagcaaccagctttagataataatagtatgcgattttgatcaacaattggaatgttacgataagcaggaagaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||| || || ||||| || ||| |||||||| || |||| ||||||||||||||||||||||| |
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|
| T |
3268892 |
caagcactctcattataatacttatagagcagccagctttcgacaacaataggatacgactttgatcagcagttgggatgttacgataagcaggaagaaa |
3268793 |
T |
|
| Q |
202 |
tcgaacctctttgtcatccaataactcgtggttgtgagaattgttgaaatatttaaccacccatttttcctcaaagccaattgttctcttattaactacc |
301 |
Q |
| |
|
| ||||||||||||||||||||||||| || |||||| ||||||||||||| ||||||| |||||||||||||||||||||||| | || ||| | | |
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|
| T |
3268792 |
ttgaacctctttgtcatccaataactcatgattgtgatgattgttgaaatatgtaaccactcatttttcctcaaagccaattgtttttatagcaaccaac |
3268693 |
T |
|
| Q |
302 |
atctttgcaccacaatcacatcttgaagattttcgtttcctttg |
345 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| ||| ||||| |
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|
| T |
3268692 |
atctttgcaccacaattacattttgaagattttcattttctttg |
3268649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 344
Target Start/End: Complemental strand, 17616220 - 17615966
Alignment:
| Q |
90 |
ttttctctaactcaagcactctcattataatacttacagagcaaccagctttagataataatagtatgcgattttgatcaacaattggaatgttacgata |
189 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||| ||||| ||||||||||| || || || || || |||| |||||||| | |||||| | |||| |
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|
| T |
17616220 |
ttttctctaactcaagcactctaattatcaaactaacagaacaaccagcttttgacaacaaaagaatacgatcttgatcaatagctggaatactttgata |
17616121 |
T |
|
| Q |
190 |
agcaggaagaaatcgaacctctttgtcatccaataactcgtggttgtgagaattgttgaaatatttaaccacccatttttcctcaaagccaattgttctc |
289 |
Q |
| |
|
||||||||||||| ||||||||| ||||| |||||||| ||||| ||| ||| || |||||||| ||||||||||||| |||| || ||||||| | |
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|
| T |
17616120 |
agcaggaagaaatttaacctctttatcatctaataactcatggttatgattattattaaaatatttcaccacccattttttctcagagttaattgttgtt |
17616021 |
T |
|
| Q |
290 |
ttattaactaccatctttgcaccacaatcacatcttgaagattttcgtttccttt |
344 |
Q |
| |
|
|||| || | || || ||||||||| ||||||||| || || |||||||||| |
|
|
| T |
17616020 |
atattcaccagcaatttagcaccacaactacatcttgacgacttccgtttccttt |
17615966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 90 - 344
Target Start/End: Complemental strand, 42028027 - 42027773
Alignment:
| Q |
90 |
ttttctctaactcaagcactctcattataatacttacagagcaaccagctttagataataatagtatgcgattttgatcaacaattggaatgttacgata |
189 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||| ||||| ||||||||||| || || || || || |||| |||||||| | ||||||| | ||||| |
|
|
| T |
42028027 |
ttttctctaactcaagcactctaattatcaaactaacagaacaaccagcttttgacaacaaaagaatacgatcttgatcaatagttggaatacttcgata |
42027928 |
T |
|
| Q |
190 |
agcaggaagaaatcgaacctctttgtcatccaataactcgtggttgtgagaattgttgaaatatttaaccacccatttttcctcaaagccaattgttctc |
289 |
Q |
| |
|
||||||||||||| ||||||||| ||||| |||||||| ||||| ||| ||| || |||||||| ||||||||||||| |||| || ||||||| | |
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|
| T |
42027927 |
agcaggaagaaatttaacctctttatcatctaataactcatggttatgattattattaaaatatttcaccacccattttttctcagagttaattgttgtt |
42027828 |
T |
|
| Q |
290 |
ttattaactaccatctttgcaccacaatcacatcttgaagattttcgtttccttt |
344 |
Q |
| |
|
|||| || | || || |||||||||| ||||||||| || || |||||||||| |
|
|
| T |
42027827 |
atattcaccaacaatttagcaccacaattacatcttgacgacttccgtttccttt |
42027773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 344
Target Start/End: Original strand, 16104870 - 16105124
Alignment:
| Q |
90 |
ttttctctaactcaagcactctcattataatacttacagagcaaccagctttagataataatagtatgcgattttgatcaacaattggaatgttacgata |
189 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||| ||||| ||||||||||| || || || || || |||| |||||||| | ||||||| | ||||| |
|
|
| T |
16104870 |
ttttctctaactcaagcactctaattatcaaactaacagaacaaccagcttttgacaacaaaagaatacgatcttgatcaatagttggaatacttcgata |
16104969 |
T |
|
| Q |
190 |
agcaggaagaaatcgaacctctttgtcatccaataactcgtggttgtgagaattgttgaaatatttaaccacccatttttcctcaaagccaattgttctc |
289 |
Q |
| |
|
||||||||||||| ||| ||||| |||| |||||||| ||||| ||| ||| || |||||||| ||||||||||||| |||| || ||||||| | |
|
|
| T |
16104970 |
agcaggaagaaatttaacgtctttatcatataataactcatggttatgattattattaaaatatttcaccacccattttttctcagagttaattgttgtt |
16105069 |
T |
|
| Q |
290 |
ttattaactaccatctttgcaccacaatcacatcttgaagattttcgtttccttt |
344 |
Q |
| |
|
|||| || | || || ||||||||| ||||||||| || || |||||||||| |
|
|
| T |
16105070 |
atattcaccaacaatttagcaccacaaatacatcttgacgacttccgtttccttt |
16105124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 90 - 274
Target Start/End: Complemental strand, 12207987 - 12207803
Alignment:
| Q |
90 |
ttttctctaactcaagcactctcattataatacttacagagcaaccagctttagataataatagtatgcgattttgatcaacaattggaatgttacgata |
189 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||| ||||| ||||||||||| | || || || || |||| |||||||| | |||||| | ||||| |
|
|
| T |
12207987 |
ttttctctaactcaagcactctaattatcaaactaacagaacaaccagcttttcacaacaaaagaatacgatcttgatcaatagctggaatacttcgata |
12207888 |
T |
|
| Q |
190 |
agcaggaagaaatcgaacctctttgtcatccaataactcgtggttgtgagaattgttgaaatatttaaccacccatttttcctca |
274 |
Q |
| |
|
||||||||||||| ||||||||| ||||| |||||||| ||||| ||| ||| || |||||||| ||||||||||||| |||| |
|
|
| T |
12207887 |
agcaggaagaaatttaacctctttatcatctaataactcatggttatgattattattaaaatatttcaccacccattttttctca |
12207803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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