View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3573_high_6 (Length: 337)
Name: NF3573_high_6
Description: NF3573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3573_high_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 6 - 337
Target Start/End: Original strand, 40404658 - 40404980
Alignment:
| Q |
6 |
agaagcaaagggtatacatatttcttttaagctcataaataagtttacactaattttaaaattgtactaattaatttgnnnnnnnnnnncatttctcaca |
105 |
Q |
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| T |
40404658 |
agaaacaaagggtatacatatttcttttaagctcataaataagtttacactaattttaaaattgtactaatttattt------ttttttcatttctcaca |
40404751 |
T |
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| Q |
106 |
gctttcaaccataaaactacttctcttgctgaatgtgtttgggtttggagccatgcttctatcaactctctacctttcaaagggagcaaaacgtcttgct |
205 |
Q |
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| T |
40404752 |
gctttcaaccataaaactacttctcttgctgaatgtgtttgggtttggagccatgcttctatcaactctctacctttcaaagggagcaaaacgtcttgct |
40404851 |
T |
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| Q |
206 |
atcattggatggatttgccttgttttcaacataagtgtatttgctgcacctctcttcgtcattgtaagtattcttaatttattttttcccaattaaatga |
305 |
Q |
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| T |
40404852 |
atcattggatggatttgccttgttttcaacataagtgtatttgctgcacctctcttcgtcattgtaagtattcttaatttattttttcccaattaaatga |
40404951 |
T |
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| Q |
306 |
gcaaatgatgataattaaataaatatttttta |
337 |
Q |
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| T |
40404952 |
gcaa---atgataattaaataaataattttta |
40404980 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 45318010 - 45318088
Alignment:
| Q |
183 |
caaagggagcaaaacgtcttgctatcattggatggatttgccttgttttcaacataagtgtatttgctgcacctctctt |
261 |
Q |
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| T |
45318010 |
caaagggatccaaacgtctttctattattggatggatatgtatggtttttaacatatgtgtatttgcttctcctctctt |
45318088 |
T |
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