View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3574_low_2 (Length: 448)
Name: NF3574_low_2
Description: NF3574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3574_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 11 - 432
Target Start/End: Original strand, 45521000 - 45521421
Alignment:
| Q |
11 |
caaaggaaataatattcaagtcgaaactaccagacatatacatcccaaaacatctaccgcttcattcatattgttttgaaaatctctcccaattcggttc |
110 |
Q |
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| T |
45521000 |
caaaggaaataatattcaagtcgaaactaccagacatatacatcccaaaccatctaccgcttcattcatattgttttgaaaatctctcccaattcggttc |
45521099 |
T |
|
| Q |
111 |
acgtccatgtctcatcaatgcccccactggaaaggtctacacctaccacgacgtccaactcacctcccgtaaagttgcctctggtcttcacaaattggga |
210 |
Q |
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| T |
45521100 |
acgtccatgtctcatcaatgcccccaccggaaaggtctacacctaccacgacgtccaactcacctcccgtaaagttgcctctggtcttcacaaattggga |
45521199 |
T |
|
| Q |
211 |
ctccaacaaggtgaagtcatcatgatcctccttcccaattcccctgaattcgtcttctcctttcttggtgcttcttatctcggcgctgtagccactgccg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
45521200 |
ctccaacaaggtgaagtcatcatgatcctccttcccaattcccctgaattcgtcttctcctttcttgctgcttcttatctcggcgctgtagccactgcag |
45521299 |
T |
|
| Q |
311 |
ccaatcctttcttcacggctgctgagattggaaagcaagcaatatcctccaacaccaagcttatcataacacaacaatgttactatgacaaagtcaaaga |
410 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45521300 |
ccaatcctttcttcacggcttctgagattggaaagcaagcaaaatcctccaacaccaagcttatcataacacaacaatgttactatgacaaagtcaaaga |
45521399 |
T |
|
| Q |
411 |
tttgttgaacaacaatgatcat |
432 |
Q |
| |
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| T |
45521400 |
tttgttgaacaacaatgatcat |
45521421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 414
Target Start/End: Original strand, 349765 - 350130
Alignment:
| Q |
49 |
tacatcccaaaacatctaccgcttcattcatattgttttgaaaatctctcccaattcggttcacgtccatgtctcatcaatgcccccactggaaaggtct |
148 |
Q |
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||||| || ||||| || || |||||||||||||| ||||||||||| || ||| ||||||||||| || ||||||||||| || |||| | | | |
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| T |
349765 |
tacattcccaaacaccttcctcttcattcatattgctttgaaaatctatcaaaatatggttcacgtccttgcctcatcaatgctccaactgctgaaattt |
349864 |
T |
|
| Q |
149 |
acacctaccacgacgtccaactcacctcccgtaaagttgcctctggtcttcacaaattgggactccaacaaggtgaagtcatcatgatcctccttcccaa |
248 |
Q |
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|||||||| | || |||||||||||| | | ||||| ||||| ||||| ||||| | || ||||||| || || ||||||||| | || || || || |
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| T |
349865 |
acacctactatgatgtccaactcaccgcgcaaaaagtcgcctccggtctcaacaaacttggcatccaacagggggatgtcatcatggttcttctccctaa |
349964 |
T |
|
| Q |
249 |
ttcccctgaattcgtcttctcctttcttggtgcttcttatctcggcgctgtagccactgccgccaatcctttcttcacggctgctgagattggaaagcaa |
348 |
Q |
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|| ||| ||||| || ||| ||||||| |||||||||| || |||||| || |||||||||||||| |||||||| | |||||||||| || ||| |
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| T |
349965 |
ttgcccggaatttgtgttcgcctttctcggtgcttcttttcgcggcgccataatgactgccgccaatcccttcttcacttcagctgagattgctaaacaa |
350064 |
T |
|
| Q |
349 |
gcaatatcctccaacaccaagcttatcataacacaacaatgttactatgacaaagtcaaagatttg |
414 |
Q |
| |
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|||| | | ||||| || ||| | | |||||||| ||||||||||||||||| || |||||| |
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|
| T |
350065 |
gcaaaagcttccaatactaagttgcttgtaacacaagcttgttactatgacaaagttaaggatttg |
350130 |
T |
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