View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3574_low_3 (Length: 348)
Name: NF3574_low_3
Description: NF3574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3574_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 54424850 - 54424536
Alignment:
| Q |
19 |
ggcacgccctcctccaaggaagctcgcattgaccgtgctctagtcacatcttcctggcaaacacttaatccaaacgctgccctccagactttggtggcct |
118 |
Q |
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| T |
54424850 |
ggcacgccctcctccaaggaaactcgcattgaccgtgctctagtcacatcttcctggcaaacactttatccaaactctgccctccagaccttggtggcct |
54424751 |
T |
|
| Q |
119 |
ctatatctgaccacactcctcttctcctacagcttttaattctataccgtggaggcaacctcaccgtagttttcggtttaataattcttggctattagaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| || |
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| T |
54424750 |
ctatatctgaccacactcctcttctcctacagctt--aattctataccgtggaggcaaactcaccgtagttttcagtttaataattcttggctattaaaa |
54424653 |
T |
|
| Q |
219 |
acagaactcaatcaatttgtgaagagcaactgggcctattatcctccgtcaaatattctcaccaaactcagtcactatattgaagacatttcctcttgga |
318 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
54424652 |
acagaacccaatcaattggtgaagagcaactgggcctattatcctccgtcaaatattctcaccaaactcaatcactgtattgaagacatttcctcttgga |
54424553 |
T |
|
| Q |
319 |
gcagaaatatcacgcca |
335 |
Q |
| |
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||||||||||||||||| |
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| T |
54424552 |
gcagaaatatcacgcca |
54424536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 20119992 - 20120299
Alignment:
| Q |
19 |
ggcacgccctcctccaaggaagctcgcattgaccgtgctctagtcacatcttcctggcaaacacttaatccaaacgctgccctccagactttggtggcct |
118 |
Q |
| |
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||||| ||||| ||||||||||| || ||||| |||||| | ||||||||||| |||||| |||| | ||||||||| |||||||||| |||||||||| |
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| T |
20119992 |
ggcacaccctcttccaaggaagcccgtattgatcgtgctttggtcacatcttcttggcaatcactatacccaaacgcttccctccagaccttggtggcct |
20120091 |
T |
|
| Q |
119 |
ctatatctgaccacactcctcttctcctacagcttttaattctataccgtggaggcaacctcaccgtagttttcggtttaataattcttggctattagaa |
218 |
Q |
| |
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|||||||||||||||| ||||| || || |||||| || ||||||| ||||| |||||| |||| | ||||||||| | ||||||||||| |||||| |
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| T |
20120092 |
ctatatctgaccacacccctctgcttctgcagcttg--atcctataccttggagacaaccttaccgcaactttcggtttgacaattcttggcttttagaa |
20120189 |
T |
|
| Q |
219 |
acagaactcaatcaatttgtgaagagcaactgggcctattatcctccgtcaaatattctcaccaaactcagtcactatattgaagacatttcctcttgga |
318 |
Q |
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| |||||||||||||| |||||||||||||||||| |||| ||||| || |||||| ||| |||||||| ||||| | | | ||| ||||| ||||||| |
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| T |
20120190 |
ccggaactcaatcaattggtgaagagcaactgggcccattaccctccatctaatattatcaacaaactcaatcactgtgtcgcagatatttcatcttgga |
20120289 |
T |
|
| Q |
319 |
gcagaaatat |
328 |
Q |
| |
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|||||||||| |
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|
| T |
20120290 |
gcagaaatat |
20120299 |
T |
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