View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3574_low_4 (Length: 317)
Name: NF3574_low_4
Description: NF3574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3574_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 9 - 299
Target Start/End: Complemental strand, 47424719 - 47424429
Alignment:
| Q |
9 |
gagatgaagtacccaaacatcaatttgtactgcttatgaaaggcattgtggggaagcagatgcttatatcggcattaacagaagtgcaacaacaggtacg |
108 |
Q |
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| T |
47424719 |
gagatgaagtgtccaaacatcaatttgtacggcttatgaaaggcattgtggggaagcagatgcttatatcaacattaacagaagtgcaccaacaggtacg |
47424620 |
T |
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| Q |
109 |
tagattagatggtttctgcagtgttgtagatgatttttcgtaaggtcgctgaaaattgatttcaaggttatgctaagaataatccttttttcttctagag |
208 |
Q |
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| T |
47424619 |
tagattagatggtttctgcagtgttgtagatgatttttcgtaaggtcgttgaaaattgatttcaaggttatgctaagaataatccttttttcttctagag |
47424520 |
T |
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| Q |
209 |
aagaggcaacctaggttcagcagcaactgttcgagagataacattaacgatgcgaacactagaactctgaaggtctaccacagatgaaagt |
299 |
Q |
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| T |
47424519 |
aagaggcaacctaggttcagcagcaactgttcgagagataacattaacgatgcgaacactagaactctgaaggtctaccacagatgaaagt |
47424429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 47391152 - 47391042
Alignment:
| Q |
9 |
gagatgaagtacccaaacatcaatttgtactgcttatgaaaggcattgtggggaagcagatgcttatatcggcattaacagaagtgcaacaacaggtacg |
108 |
Q |
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|||||||| |||| ||| | || ||||||| |||||||||||| ||||||||| | |||||||||| ||||||||| ||||||||||||||||| | |
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| T |
47391152 |
gagatgaaatacctaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattaacaaaagtgcaacaacaggtagg |
47391053 |
T |
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| Q |
109 |
tagattagatg |
119 |
Q |
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||| |||||| |
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| T |
47391052 |
cagaatagatg |
47391042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 47419515 - 47419405
Alignment:
| Q |
9 |
gagatgaagtacccaaacatcaatttgtactgcttatgaaaggcattgtggggaagcagatgcttatatcggcattaacagaagtgcaacaacaggtacg |
108 |
Q |
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|||||||| | |||||| | || ||||||| |||||||||||| ||||||||| | |||||||||| |||||| || ||||||||||||||||| | |
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| T |
47419515 |
gagatgaaatgcccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
47419416 |
T |
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| Q |
109 |
tagattagatg |
119 |
Q |
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|||| |||||| |
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| T |
47419415 |
tagaatagatg |
47419405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 47421987 - 47421873
Alignment:
| Q |
9 |
gagatgaagtacccaaacatcaatttgtactgcttatgaaaggcattgtggggaagcagatgcttatatcggcattaacagaagtgcaacaacaggtacg |
108 |
Q |
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|||||||| |||| ||| | || ||||||| |||||||||||| ||||||||| | | |||||||| |||||| || ||||||||||||||||| | |
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| T |
47421987 |
gagatgaaataccgaaagaacattttgtacggcttatgaaagggattgtgggggatccgatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
47421888 |
T |
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| Q |
109 |
tagattagatggttt |
123 |
Q |
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|||| ||||| |||| |
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| T |
47421887 |
tagaatagatagttt |
47421873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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