View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3575_high_11 (Length: 250)

Name: NF3575_high_11
Description: NF3575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3575_high_11
NF3575_high_11
[»] chr3 (31 HSPs)
chr3 (168-231)||(375836-375899)
chr3 (163-231)||(9588856-9588924)
chr3 (171-231)||(15638424-15638484)
chr3 (171-231)||(3751554-3751614)
chr3 (171-227)||(6512499-6512555)
chr3 (20-67)||(375995-376042)
chr3 (20-67)||(6749236-6749283)
chr3 (20-62)||(6472520-6472562)
chr3 (169-231)||(7259623-7259685)
chr3 (182-231)||(37030921-37030970)
chr3 (174-230)||(6472670-6472726)
chr3 (23-62)||(38750885-38750924)
chr3 (168-231)||(38751023-38751086)
chr3 (171-231)||(296546-296604)
chr3 (182-231)||(2599148-2599197)
chr3 (20-61)||(21934322-21934363)
chr3 (183-231)||(5493645-5493693)
chr3 (23-67)||(45759720-45759764)
chr3 (184-231)||(2093873-2093920)
chr3 (186-229)||(12568520-12568563)
chr3 (186-229)||(13544984-13545027)
chr3 (19-62)||(20841568-20841611)
chr3 (20-62)||(6512349-6512391)
chr3 (28-62)||(21915701-21915735)
chr3 (171-220)||(6749087-6749136)
chr3 (182-231)||(20841405-20841454)
chr3 (163-231)||(21959634-21959702)
chr3 (171-231)||(23701880-23701940)
chr3 (171-231)||(23720335-23720395)
chr3 (171-231)||(23738791-23738851)
chr3 (171-231)||(23772176-23772236)
[»] chr8 (14 HSPs)
chr8 (163-231)||(1358819-1358887)
chr8 (163-231)||(34038981-34039049)
chr8 (163-227)||(16599268-16599332)
chr8 (168-231)||(3741747-3741810)
chr8 (20-62)||(36682796-36682838)
chr8 (163-231)||(3443631-3443699)
chr8 (27-62)||(3741908-3741943)
chr8 (20-67)||(14896861-14896908)
chr8 (172-231)||(29315806-29315865)
chr8 (20-58)||(1358672-1358710)
chr8 (183-228)||(25496743-25496788)
chr8 (171-231)||(4418824-4418884)
chr8 (23-67)||(5871024-5871068)
chr8 (183-231)||(11087222-11087270)
[»] chr6 (13 HSPs)
chr6 (163-231)||(8460948-8461016)
chr6 (173-230)||(23410573-23410630)
chr6 (163-231)||(21527231-21527299)
chr6 (172-231)||(6111041-6111100)
chr6 (172-231)||(9095684-9095743)
chr6 (177-231)||(4665974-4666028)
chr6 (182-231)||(25056591-25056640)
chr6 (163-231)||(7972565-7972633)
chr6 (21-62)||(23410740-23410781)
chr6 (183-231)||(4184770-4184818)
chr6 (23-67)||(9353337-9353381)
chr6 (167-204)||(31871714-31871751)
chr6 (19-67)||(2437622-2437670)
[»] chr4 (14 HSPs)
chr4 (171-231)||(53370311-53370371)
chr4 (172-231)||(30913637-30913696)
chr4 (171-227)||(30912714-30912770)
chr4 (184-231)||(38840364-38840411)
chr4 (182-231)||(25493924-25493973)
chr4 (182-231)||(53393438-53393487)
chr4 (172-231)||(24538220-24538279)
chr4 (188-231)||(37209934-37209977)
chr4 (184-231)||(45666417-45666464)
chr4 (182-231)||(2492934-2492983)
chr4 (186-231)||(54982705-54982750)
chr4 (183-231)||(6949223-6949271)
chr4 (187-231)||(19443501-19443545)
chr4 (19-67)||(49263241-49263289)
[»] chr2 (27 HSPs)
chr2 (171-227)||(41541143-41541199)
chr2 (168-231)||(4316802-4316865)
chr2 (171-231)||(158006-158066)
chr2 (163-231)||(11084013-11084080)
chr2 (163-231)||(27746582-27746650)
chr2 (20-62)||(20171225-20171267)
chr2 (164-222)||(33659802-33659860)
chr2 (20-62)||(36243812-36243854)
chr2 (171-224)||(42872200-42872253)
chr2 (182-231)||(45273364-45273413)
chr2 (171-231)||(44898203-44898263)
chr2 (176-231)||(15507544-15507599)
chr2 (172-231)||(34424692-34424751)
chr2 (181-231)||(25965802-25965852)
chr2 (182-231)||(16806503-16806552)
chr2 (182-231)||(16845784-16845833)
chr2 (22-58)||(4316914-4316950)
chr2 (172-223)||(4959298-4959349)
chr2 (24-67)||(25714153-25714196)
chr2 (20-62)||(45273208-45273250)
chr2 (182-227)||(11073881-11073926)
chr2 (19-60)||(16806423-16806464)
chr2 (19-60)||(16845704-16845745)
chr2 (171-204)||(33024374-33024407)
chr2 (20-57)||(33024520-33024557)
chr2 (23-67)||(15507709-15507753)
chr2 (27-67)||(33659957-33659997)
[»] chr1 (16 HSPs)
chr1 (171-231)||(4395994-4396054)
chr1 (20-66)||(40519007-40519053)
chr1 (182-231)||(39386782-39386831)
chr1 (172-219)||(1394781-1394828)
chr1 (20-67)||(1674559-1674606)
chr1 (169-227)||(37710398-37710456)
chr1 (178-231)||(788205-788258)
chr1 (18-67)||(4395837-4395886)
chr1 (163-223)||(1674694-1674754)
chr1 (171-231)||(19269825-19269885)
chr1 (184-231)||(6295699-6295746)
chr1 (23-62)||(23699198-23699237)
chr1 (168-231)||(52415029-52415092)
chr1 (19-61)||(10384084-10384126)
chr1 (20-62)||(30280266-30280308)
chr1 (18-54)||(52957490-52957526)
[»] chr5 (21 HSPs)
chr5 (20-62)||(249315-249357)
chr5 (182-231)||(6428326-6428375)
chr5 (178-231)||(16365822-16365875)
chr5 (182-231)||(17201328-17201377)
chr5 (175-231)||(39614927-39614983)
chr5 (168-223)||(43346608-43346663)
chr5 (168-231)||(249456-249516)
chr5 (182-231)||(8544685-8544734)
chr5 (163-204)||(14967651-14967692)
chr5 (182-231)||(18413316-18413365)
chr5 (179-228)||(20201754-20201803)
chr5 (182-231)||(42674027-42674076)
chr5 (27-62)||(8544536-8544571)
chr5 (184-231)||(17202341-17202388)
chr5 (182-229)||(32474288-32474335)
chr5 (24-62)||(43346471-43346509)
chr5 (182-231)||(1583548-1583597)
chr5 (178-219)||(32717924-32717965)
chr5 (183-231)||(36437297-36437345)
chr5 (23-67)||(39585655-39585699)
chr5 (168-196)||(39888589-39888617)
[»] chr7 (17 HSPs)
chr7 (182-231)||(3835594-3835643)
chr7 (171-227)||(17269571-17269625)
chr7 (183-231)||(12394239-12394287)
chr7 (192-231)||(2271863-2271902)
chr7 (172-231)||(4962870-4962929)
chr7 (185-231)||(35793061-35793107)
chr7 (182-231)||(4567402-4567451)
chr7 (182-231)||(8614780-8614829)
chr7 (26-62)||(12394395-12394431)
chr7 (183-231)||(14771361-14771409)
chr7 (183-231)||(15221813-15221861)
chr7 (171-231)||(15643449-15643509)
chr7 (163-231)||(25290714-25290782)
chr7 (185-231)||(16196873-16196919)
chr7 (24-62)||(29664536-29664574)
chr7 (20-62)||(39427638-39427680)
chr7 (182-231)||(10534959-10535008)
[»] scaffold0188 (1 HSPs)
scaffold0188 (171-227)||(6349-6405)
[»] scaffold0006 (1 HSPs)
scaffold0006 (163-231)||(46510-46578)
[»] scaffold1130 (1 HSPs)
scaffold1130 (172-231)||(471-530)
[»] scaffold0841 (1 HSPs)
scaffold0841 (24-67)||(4477-4520)
[»] scaffold0242 (2 HSPs)
scaffold0242 (168-228)||(14895-14955)
scaffold0242 (168-228)||(23730-23790)
[»] scaffold0118 (1 HSPs)
scaffold0118 (171-231)||(15171-15231)


Alignment Details
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 375899 - 375836
Alignment:
Q  168 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  375899 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 375836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 9588924 - 9588856
Alignment:
Q  163 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||| |||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||    
T  9588924 catgaaatcattattataggtaacaaagttttgtttaaattttaagataacaagaaacaaactttgttt 9588856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 15638424 - 15638484
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  15638424 cattattataggtaacaaaattttgtttgaattttaagataacaagaaacaaactttgttt 15638484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 3751614 - 3751554
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||| ||||||||||| |||||| | ||||||||||||||||||||||||    
T  3751614 cattattataggtaagaaaattttgtttaaatttaaagataacaagaaacaaactttgttt 3751554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 6512499 - 6512555
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaacttt 227  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  6512499 cattattataggtaacaaaattttgtataaatttgaggataacaagaaacaaacttt 6512555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 376042 - 375995
Alignment:
Q  20 ttccaatgagtcttccactctttattccttttgaacattcatgcagtc 67  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  376042 ttccaatgagtctttcactctttattccttttgaacattcatgcagtc 375995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 6749283 - 6749236
Alignment:
Q  20 ttccaatgagtcttccactctttattccttttgaacattcatgcagtc 67  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  6749283 ttccaatgagtcttccactctttcttccttttgaacattcatgaagtc 6749236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 6472520 - 6472562
Alignment:
Q  20 ttccaatgagtcttccactctttattccttttgaacattcatg 62  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  6472520 ttccaatgagtcttccactctttcttccttttgaacattcatg 6472562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 7259623 - 7259685
Alignment:
Q  169 atcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||| |||||||||||||||||||| |||||| | ||||| |||||||||| |||||||    
T  7259623 atcattatcataggtaacaaaattttgtttaaatttgaagataataagaaacaaattttgttt 7259685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 37030921 - 37030970
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  37030921 gtaacaaaattttgtttaaatttgaagataacaagaaacaaactttgttt 37030970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 6472670 - 6472726
Alignment:
Q  174 tattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtt 230  Q
    |||| ||||||||||||||||||  |||||| || ||||||||||||||||||||||    
T  6472670 tattgtaggtaacaaaattttgtataaatttgagaataacaagaaacaaactttgtt 6472726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 38750885 - 38750924
Alignment:
Q  23 caatgagtcttccactctttattccttttgaacattcatg 62  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  38750885 caatgagtcttccactctttcttccttttgaacattcatg 38750924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 38751023 - 38751086
Alignment:
Q  168 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||| |||||||||||||||| |||| |   |||||||||||||||| |||||||    
T  38751023 aatcattattatatgtaacaaaattttgtttaaatctgtagataacaagaaacaaattttgttt 38751086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 296604 - 296546
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||  ||||||||||||||| |||||||| ||||||||||||| || |||||||    
T  296604 cattattata--taacaaaattttgtttaaattttaagataacaagaaacgaaatttgttt 296546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 2599197 - 2599148
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||| ||||||||| |||||| | ||||||||||||||||||||||||    
T  2599197 gtaacacaattttgtttaaatttaaagataacaagaaacaaactttgttt 2599148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 21934322 - 21934363
Alignment:
Q  20 ttccaatgagtcttccactctttattccttttgaacattcat 61  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  21934322 ttccaatgagtcttccactatttattctttttgaacattcat 21934363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 5493693 - 5493645
Alignment:
Q  183 taacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||| |||||| | ||||| ||||||||||||||||||    
T  5493693 taacaaaattttgtttaaatttgaagataataagaaacaaactttgttt 5493645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 45759720 - 45759764
Alignment:
Q  23 caatgagtcttccactctttattccttttgaacattcatgcagtc 67  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||    
T  45759720 caatgagtcttccactctttattctttttgaacatttatggagtc 45759764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 2093920 - 2093873
Alignment:
Q  184 aacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||| ||| |||||| | ||||||||||||||||||||||||    
T  2093920 aacaaaatttagtttaaatttgaagataacaagaaacaaactttgttt 2093873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 12568563 - 12568520
Alignment:
Q  186 caaaattttgttaaaattttaggataacaagaaacaaactttgt 229  Q
    |||||||||||| |||||||| ||||| ||||||||||||||||    
T  12568563 caaaattttgtttaaattttaagataataagaaacaaactttgt 12568520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 13545027 - 13544984
Alignment:
Q  186 caaaattttgttaaaattttaggataacaagaaacaaactttgt 229  Q
    |||||||||||| |||||||| ||||| ||||||||||||||||    
T  13545027 caaaattttgtttaaattttaagataataagaaacaaactttgt 13544984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 20841611 - 20841568
Alignment:
Q  19 attccaatgagtcttccactctttattccttttgaacattcatg 62  Q
    ||||||||||||||| |||| ||| |||||||||||||||||||    
T  20841611 attccaatgagtctttcacttttttttccttttgaacattcatg 20841568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 6512349 - 6512391
Alignment:
Q  20 ttccaatgagtcttccactctttattccttttgaacattcatg 62  Q
    |||||||||| |||||||||||| ||||||||||| |||||||    
T  6512349 ttccaatgagccttccactctttcttccttttgaaaattcatg 6512391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 21915735 - 21915701
Alignment:
Q  28 agtcttccactctttattccttttgaacattcatg 62  Q
    |||||||||||| ||||||||||||||||||||||    
T  21915735 agtcttccactcgttattccttttgaacattcatg 21915701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 6749136 - 6749087
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaac 220  Q
    |||||| ||||||| |||||||||||  |||||| |||||||||||||||    
T  6749136 cattatgataggtagcaaaattttgtataaatttgaggataacaagaaac 6749087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 20841454 - 20841405
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||| ||||||||| |||||| | ||||| ||||||||||||||||||    
T  20841454 gtaacacaattttgtttaaatttaaagataataagaaacaaactttgttt 20841405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 21959634 - 21959702
Alignment:
Q  163 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||  ||||| ||||||||||| |||||||| |||||| | |||||||| |||| || |||||||    
T  21959634 catggaactattatcataggtaacaacattttgtttaaatttgaagataacaataaactaattttgttt 21959702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 23701880 - 23701940
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||| |||||| ||||||||||||||| |||||| | |||||||  ||||||| |||||||    
T  23701880 cattgttatagataacaaaattttgtttaaatttaaagataacattaaacaaattttgttt 23701940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 23720335 - 23720395
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||| |||||| ||||||||||||||| |||||| | |||||||  ||||||| |||||||    
T  23720335 cattgttatagataacaaaattttgtttaaatttaaagataacattaaacaaattttgttt 23720395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 23738791 - 23738851
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||| |||||| ||||||||||||||| |||||| | |||||||  ||||||| |||||||    
T  23738791 cattgttatagataacaaaattttgtttaaatttaaagataacattaaacaaattttgttt 23738851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 23772176 - 23772236
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||| |||||| ||||||||||||||| |||||| | |||||||  ||||||| |||||||    
T  23772176 cattgttatagataacaaaattttgtttaaatttaaagataacattaaacaaattttgttt 23772236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 1358819 - 1358887
Alignment:
Q  163 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  1358819 catggaaccattattataggtaacaaaattttgtttaaattttaagataacaagaaacaaactttgttt 1358887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 34039049 - 34038981
Alignment:
Q  163 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||    
T  34039049 catggaatcattattataggtaacaaaattttatttaaattttaagataacaagaaacaaactttgttt 34038981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 16599268 - 16599332
Alignment:
Q  163 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaacttt 227  Q
    |||||||||||||| ||||||||||||||||| || |||||| | ||||||  ||||||||||||    
T  16599268 catggaatcattatgataggtaacaaaattttatttaaatttgaagataactcgaaacaaacttt 16599332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 3741810 - 3741747
Alignment:
Q  168 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||| ||||||||||||| || |||| | | |||||||||||||||| |||||||    
T  3741810 aatcattattatatgtaacaaaattttctttaaatatgaagataacaagaaacaaattttgttt 3741747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 36682838 - 36682796
Alignment:
Q  20 ttccaatgagtcttccactctttattccttttgaacattcatg 62  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  36682838 ttccaatgagtcttccactattttttccttttgaacattcatg 36682796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 3443631 - 3443699
Alignment:
Q  163 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||  ||||| |||| ||||||||||| ||| |||||| | |||||||||||||||| |||||||    
T  3443631 catggaactattatcatagataacaaaatttggtttaaatttgaagataacaagaaacaaattttgttt 3443699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 3741943 - 3741908
Alignment:
Q  27 gagtcttccactctttattccttttgaacattcatg 62  Q
    |||||||||||||||| |||||||||||||||||||    
T  3741943 gagtcttccactctttcttccttttgaacattcatg 3741908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 14896908 - 14896861
Alignment:
Q  20 ttccaatgagtcttccactctttattccttttgaacattcatgcagtc 67  Q
    ||||||||||||||||||||||| ||||||||||  ||||||| ||||    
T  14896908 ttccaatgagtcttccactctttcttccttttgataattcatggagtc 14896861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 29315806 - 29315865
Alignment:
Q  172 attattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||| |||||||||||||||| |||| |   |||||||||||||||| |||||||    
T  29315806 attattatatgtaacaaaattttgtttaaatctgtagataacaagaaacaaattttgttt 29315865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 1358672 - 1358710
Alignment:
Q  20 ttccaatgagtcttccactctttattccttttgaacatt 58  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  1358672 ttccaatgagtcttccgctctttcttccttttgaacatt 1358710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 25496788 - 25496743
Alignment:
Q  183 taacaaaattttgttaaaattttaggataacaagaaacaaactttg 228  Q
    ||||||||||||||| |||||| | ||||| |||||||||||||||    
T  25496788 taacaaaattttgtttaaatttaaagataataagaaacaaactttg 25496743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 4418824 - 4418884
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||||||| ||| ||| |||||| | ||||| ||||||||| ||| ||||    
T  4418824 cattattataggtaacaaagtttagtttaaatttgaagataataagaaacaatcttcgttt 4418884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 5871068 - 5871024
Alignment:
Q  23 caatgagtcttccactctttattccttttgaacattcatgcagtc 67  Q
    |||||||||||||| | ||| ||||||||||||||||||| ||||    
T  5871068 caatgagtcttccattatttcttccttttgaacattcatggagtc 5871024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 11087270 - 11087222
Alignment:
Q  183 taacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||| |||||| | ||||| ||||||||| ||||||||    
T  11087270 taacaaaattttgtttaaatttgaagataataagaaacaagctttgttt 11087222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 8461016 - 8460948
Alignment:
Q  163 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||| |||| |||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||    
T  8461016 catggaaccattgttataggtaacaaagttttgtttaaattttaagataacaagaaacaaactttgttt 8460948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 23410630 - 23410573
Alignment:
Q  173 ttattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgtt 230  Q
    |||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  23410630 ttatcataggtaacaaaattttgtttaaattttaagataacaagaaacaaactttgtt 23410573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 21527231 - 21527299
Alignment:
Q  163 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||  ||||| |||||||||||||||||||| |||||| | |||||||||||||||| |||||||    
T  21527231 catggaactattatcataggtaacaaaattttgtttaaatttgaagataacaagaaacaaattttgttt 21527299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 6111041 - 6111100
Alignment:
Q  172 attattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||||||||||| || || ||| | ||||||||||||||||||||||||    
T  6111041 attattataggtaacaaaattttatttaagtttgaagataacaagaaacaaactttgttt 6111100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 9095684 - 9095743
Alignment:
Q  172 attattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||| |||||||||||||||||||| |||||| | |||||||||||||||| |||||||    
T  9095684 attatcataggtaacaaaattttgtttaaatttgaagataacaagaaacaaattttgttt 9095743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 4666028 - 4665974
Alignment:
Q  177 tataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||||||||| |||||| | |||||||||||||||| |||||||    
T  4666028 tataggtaacaaaattttgtttaaatttaaagataacaagaaacaaattttgttt 4665974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 25056640 - 25056591
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  25056640 gtaacaaaattttgtttaaatttgaagataacaagaaacaaactttgttt 25056591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 7972565 - 7972633
Alignment:
Q  163 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||  ||||| | |||||||||||||||||| |||||| | |||||||||||||||| |||||||    
T  7972565 catggaactattatcacaggtaacaaaattttgtttaaatttgaagataacaagaaacaaattttgttt 7972633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 23410781 - 23410740
Alignment:
Q  21 tccaatgagtcttccactctttattccttttgaacattcatg 62  Q
    |||||||||||||| ||||||| |||||||||||||||||||    
T  23410781 tccaatgagtcttcgactctttcttccttttgaacattcatg 23410740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 4184818 - 4184770
Alignment:
Q  183 taacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||| |||||| | |||||||||||||||| |||||||    
T  4184818 taacaaaattttgtttaaatttaaagataacaagaaacaaattttgttt 4184770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 9353381 - 9353337
Alignment:
Q  23 caatgagtcttccactctttattccttttgaacattcatgcagtc 67  Q
    |||||||||||| ||||||| ||||||||||||||||||| ||||    
T  9353381 caatgagtcttctactctttcttccttttgaacattcatggagtc 9353337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 31871714 - 31871751
Alignment:
Q  167 gaatcattattataggtaacaaaattttgttaaaattt 204  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  31871714 gaatcattattatagataacaaaatattgttaaaattt 31871751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 2437622 - 2437670
Alignment:
Q  19 attccaatgagtcttccactctttattccttttgaacattcatgcagtc 67  Q
    ||||||| || ||||||||| ||| ||||||||||||||||||| ||||    
T  2437622 attccaacgaatcttccactttttcttccttttgaacattcatggagtc 2437670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 53370311 - 53370371
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||||||||    
T  53370311 cattattataggtaacaaacttttgtttaaattttaagataataagaaacaaactttgttt 53370371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 30913696 - 30913637
Alignment:
Q  172 attattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||||| ||||||||    
T  30913696 attattataggtaacaaaaatttgtttaaattttaagataacaagaaacaagctttgttt 30913637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 30912770 - 30912714
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaacttt 227  Q
    ||||||| |||||||||||  |||||| |||||||| ||||||||||||||||||||    
T  30912770 cattattgtaggtaacaaatatttgtttaaattttaagataacaagaaacaaacttt 30912714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 38840364 - 38840411
Alignment:
Q  184 aacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||| |||||| | ||||||||||||||||||||||||    
T  38840364 aacaaaattttgtttaaatttgaagataacaagaaacaaactttgttt 38840411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 25493973 - 25493924
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||||| |||||| | |||| |||||||||||||||||||    
T  25493973 gtaacaaaattttgtttaaatttgaagataccaagaaacaaactttgttt 25493924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 53393487 - 53393438
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||||| |||||| | |||||| |||||||||||||||||    
T  53393487 gtaacaaaattttgtttaaatttaaagataactagaaacaaactttgttt 53393438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 24538220 - 24538279
Alignment:
Q  172 attattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||| ||||||||||||||||||||  ||||  | |||||||||||||||| |||||||    
T  24538220 attatcataggtaacaaaattttgtttgaattcgaagataacaagaaacaaattttgttt 24538279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 37209934 - 37209977
Alignment:
Q  188 aaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||| |||||| | ||||||||||||||||||||||||    
T  37209934 aaattttgtttaaatttgaagataacaagaaacaaactttgttt 37209977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 45666464 - 45666417
Alignment:
Q  184 aacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||| |||||| |  |||||||||||||||||||||||    
T  45666464 aacaaaattttgtttaaatttcaaaataacaagaaacaaactttgttt 45666417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 2492983 - 2492934
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||||| |||||| | |||||||| ||||||| |||||||    
T  2492983 gtaacaaaattttgtttaaatttgaagataacaaaaaacaaattttgttt 2492934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 54982705 - 54982750
Alignment:
Q  186 caaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||  |||||| | ||||||||||||||||||||||||    
T  54982705 caaaattttgtataaatttgaagataacaagaaacaaactttgttt 54982750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 6949271 - 6949223
Alignment:
Q  183 taacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||| ||||||  ||||| | ||||||||||||||||||||||||    
T  6949271 taacaaaaatttgtttcaatttgaagataacaagaaacaaactttgttt 6949223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 19443501 - 19443545
Alignment:
Q  187 aaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||| |||||| | |||||||||||||||| |||||||    
T  19443501 aaaattttgtttaaatttgaagataacaagaaacaaattttgttt 19443545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 49263289 - 49263241
Alignment:
Q  19 attccaatgagtcttccactctttattccttttgaacattcatgcagtc 67  Q
    ||||||| |||||||||||| ||| |||| |||||||||||||| ||||    
T  49263289 attccaacgagtcttccacttttttttccatttgaacattcatggagtc 49263241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 41541199 - 41541143
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaacttt 227  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||    
T  41541199 cattattatagataacaaaattttgtttaaattttaagataacaagaaacaaacttt 41541143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 4316865 - 4316802
Alignment:
Q  168 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||||| ||||||||||||| |||||| | ||||||||| ||||||||||||||    
T  4316865 aatcattattataggttacaaaattttgtttaaatttaaagataacaaggaacaaactttgttt 4316802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 158006 - 158066
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||| ||||||||||||||| |||||| | | ||||||||||||||||||||||    
T  158006 cattattatagataacaaaattttgtttaaatttgaaggtaacaagaaacaaactttgttt 158066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 11084080 - 11084013
Alignment:
Q  163 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||| ||||||||||||| ||||||||| ||| |||||||| |||| |||||||||||||||||||    
T  11084080 catggaaccattattataggtgacaaaattt-gtttaaattttaagatagcaagaaacaaactttgttt 11084013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 27746650 - 27746582
Alignment:
Q  163 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||| |||||| ||||||| |||||||||||| |||||| | |||||||||||||||| |||||||    
T  27746650 catggaaccattatcataggtagcaaaattttgtttaaatttgaagataacaagaaacaaattttgttt 27746582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 20171225 - 20171267
Alignment:
Q  20 ttccaatgagtcttccactctttattccttttgaacattcatg 62  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  20171225 ttccaatgagtcttccactctttcttccttttgaacattcatg 20171267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 33659860 - 33659802
Alignment:
Q  164 atggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaa 222  Q
    |||||| |||| |||||||||||||||||||||| ||||| || |||||||||||||||    
T  33659860 atggaaccattgttataggtaacaaaattttgtttaaattgtaagataacaagaaacaa 33659802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 36243812 - 36243854
Alignment:
Q  20 ttccaatgagtcttccactctttattccttttgaacattcatg 62  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  36243812 ttccaatgtgtcttccactctttattccttttgaacattcatg 36243854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 42872200 - 42872253
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaac 224  Q
    |||| |||||||||||||| ||||||| |||||||| |||||||||||||||||    
T  42872200 cattgttataggtaacaaagttttgtttaaattttaagataacaagaaacaaac 42872253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 45273364 - 45273413
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||| ||||||| |||||||| ||||||||||||||||||||||||    
T  45273364 gtaacaaagttttgtttaaattttaagataacaagaaacaaactttgttt 45273413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 44898263 - 44898203
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||| ||||||||||| |||||| | |||||||||||||  |||||||||    
T  44898263 cattattataggtaataaaattttgtttaaatttgaagataacaagaaacgcactttgttt 44898203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 15507599 - 15507544
Alignment:
Q  176 ttataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||| ||||||||||||  ||||||| |||||||| |||||||||||||||    
T  15507599 ttataggtagcaaaattttgtttgaattttaagataacaaaaaacaaactttgttt 15507544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 34424692 - 34424751
Alignment:
Q  172 attattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||| |||||||||||||||||||| |||||| | |||||||| ||||||| |||||||    
T  34424692 attatcataggtaacaaaattttgtttaaatttgaagataacaaaaaacaaattttgttt 34424751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 25965802 - 25965852
Alignment:
Q  181 ggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||||| |||||| | |||||||||||||||| |||||||    
T  25965802 ggtaacaaaattttgtttaaatttgaagataacaagaaacaaattttgttt 25965852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 16806503 - 16806552
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||||| |||||| ||||||||||||| |||| |||||||    
T  16806503 gtaacaaaattttgtttaaatttgaggataacaagaatcaaattttgttt 16806552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 16845784 - 16845833
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||||| |||||| ||||||||||||| |||| |||||||    
T  16845784 gtaacaaaattttgtttaaatttgaggataacaagaatcaaattttgttt 16845833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 4316950 - 4316914
Alignment:
Q  22 ccaatgagtcttccactctttattccttttgaacatt 58  Q
    ||||||||||||||||||||| |||||||||||||||    
T  4316950 ccaatgagtcttccactctttcttccttttgaacatt 4316914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 4959298 - 4959349
Alignment:
Q  172 attattataggtaacaaaattttgttaaaattttaggataacaagaaacaaa 223  Q
    ||||| ||||||||||||||||| || |||||| | ||||||||||||||||    
T  4959298 attatcataggtaacaaaattttatttaaatttgaagataacaagaaacaaa 4959349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 25714153 - 25714196
Alignment:
Q  24 aatgagtcttccactctttattccttttgaacattcatgcagtc 67  Q
    ||||| ||||||||||||| ||||||||||||||||||| ||||    
T  25714153 aatgattcttccactctttcttccttttgaacattcatggagtc 25714196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 45273208 - 45273250
Alignment:
Q  20 ttccaatgagtcttccactctttattccttttgaacattcatg 62  Q
    ||||||||||||||||| | ||| |||||||||||||||||||    
T  45273208 ttccaatgagtcttccattttttcttccttttgaacattcatg 45273250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 11073881 - 11073926
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaacttt 227  Q
    |||||||||||||||| |||||| |  |||||||||||||||||||    
T  11073881 gtaacaaaattttgtttaaatttgaaaataacaagaaacaaacttt 11073926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 16806423 - 16806464
Alignment:
Q  19 attccaatgagtcttccactctttattccttttgaacattca 60  Q
    ||||||| |||||||||||| ||| |||||||||||||||||    
T  16806423 attccaacgagtcttccactttttcttccttttgaacattca 16806464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 16845704 - 16845745
Alignment:
Q  19 attccaatgagtcttccactctttattccttttgaacattca 60  Q
    ||||||| |||||||||||| ||| |||||||||||||||||    
T  16845704 attccaacgagtcttccactttttcttccttttgaacattca 16845745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 33024407 - 33024374
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattt 204  Q
    ||||||||||||||||||||||||||| ||||||    
T  33024407 cattattataggtaacaaaattttgtttaaattt 33024374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 33024557 - 33024520
Alignment:
Q  20 ttccaatgagtcttccactctttattccttttgaacat 57  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  33024557 ttccaatgagccttccactctttcttccttttgaacat 33024520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 15507753 - 15507709
Alignment:
Q  23 caatgagtcttccactctttattccttttgaacattcatgcagtc 67  Q
    ||||||||||| || ||||| ||||||||||||||||||| ||||    
T  15507753 caatgagtcttgcattctttcttccttttgaacattcatggagtc 15507709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 33659997 - 33659957
Alignment:
Q  27 gagtcttccactctttattccttttgaacattcatgcagtc 67  Q
    |||||||| ||||||| ||||||||||||||||||| ||||    
T  33659997 gagtcttctactctttcttccttttgaacattcatggagtc 33659957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 4395994 - 4396054
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||||||| ||||||| |||||||| | |||| |||||||||||||||||    
T  4395994 cattattataggtaacaaagttttgtttaaattttaagctaacgagaaacaaactttgttt 4396054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 40519007 - 40519053
Alignment:
Q  20 ttccaatgagtcttccactctttattccttttgaacattcatgcagt 66  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||    
T  40519007 ttccaatgagtcttccactgtttcttccttttgaacattcatgcagt 40519053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 39386831 - 39386782
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  39386831 gtaacaaaattttgtttaaatttgaagataacaagaaacaaactttgttt 39386782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 1394781 - 1394828
Alignment:
Q  172 attattataggtaacaaaattttgttaaaattttaggataacaagaaa 219  Q
    |||| ||||||||||||||||||||| |||||||| ||||||||||||    
T  1394781 attagtataggtaacaaaattttgtttaaattttaagataacaagaaa 1394828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 1674559 - 1674606
Alignment:
Q  20 ttccaatgagtcttccactctttattccttttgaacattcatgcagtc 67  Q
    ||||||||||||||||||||||| |||||||| |||||||||| ||||    
T  1674559 ttccaatgagtcttccactctttcttccttttaaacattcatgaagtc 1674606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 37710398 - 37710456
Alignment:
Q  169 atcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaacttt 227  Q
    ||||||||||||||||| ||||||||||| |||||| | |||| ||| |||||||||||    
T  37710398 atcattattataggtaagaaaattttgtttaaatttgaagataccaaaaaacaaacttt 37710456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 788205 - 788258
Alignment:
Q  178 ataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||||||||| |||||| | |||||||||||| ||| |||||||    
T  788205 ataggtaacaaaattttgtttaaatttgaagataacaagaaataaattttgttt 788258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 4395837 - 4395886
Alignment:
Q  18 cattccaatgagtcttccactctttattccttttgaacattcatgcagtc 67  Q
    |||||||||||||||| |||||||| ||| ||||||||||||||| ||||    
T  4395837 cattccaatgagtctttcactcttttttcgttttgaacattcatggagtc 4395886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 1674694 - 1674754
Alignment:
Q  163 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaa 223  Q
    ||||||| |||||| |||| |||||||||||| || |||||| | ||||||||||||||||    
T  1674694 catggaaccattatcatagataacaaaattttatttaaatttgaagataacaagaaacaaa 1674754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 19269885 - 19269825
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||| |||| ||||||  ||||| | ||||||||||| ||||||||||||    
T  19269885 cattattataggtaaaaaaaatttgtttcaatttgaagataacaagaagcaaactttgttt 19269825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 6295699 - 6295746
Alignment:
Q  184 aacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||| |||||| | |||||||||||||||| |||||||    
T  6295699 aacaaaattttgtttaaatttgaagataacaagaaacaaattttgttt 6295746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 23699198 - 23699237
Alignment:
Q  23 caatgagtcttccactctttattccttttgaacattcatg 62  Q
    |||| ||||||||||||||| |||||||||||||||||||    
T  23699198 caattagtcttccactctttcttccttttgaacattcatg 23699237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 231
Target Start/End: Complemental strand, 52415092 - 52415029
Alignment:
Q  168 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||| | |||||||||||||||| |||| | | ||||| |||||||||| |||||||    
T  52415092 aatcattattacatgtaacaaaattttgtttaaatctgaagataagaagaaacaaattttgttt 52415029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 10384084 - 10384126
Alignment:
Q  19 attccaatgagtcttccactctttattccttttgaacattcat 61  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||    
T  10384084 attccaatgagtcttccattctttcttctttttgaacattcat 10384126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 30280308 - 30280266
Alignment:
Q  20 ttccaatgagtcttccactctttattccttttgaacattcatg 62  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||    
T  30280308 ttccaatgagtcttccactatttcttccttttcaacattcatg 30280266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 52957526 - 52957490
Alignment:
Q  18 cattccaatgagtcttccactctttattccttttgaa 54  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  52957526 cattccaatgagtcttccactctttcttctttttgaa 52957490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 249315 - 249357
Alignment:
Q  20 ttccaatgagtcttccactctttattccttttgaacattcatg 62  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  249315 ttccaatgagtcttccactctttcttccttttgaacattcatg 249357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 6428375 - 6428326
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||||||||||| | |||||||| |||||||||||||||    
T  6428375 gtaacaaaattttgttaaaatttaaagataacaacaaacaaactttgttt 6428326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 16365875 - 16365822
Alignment:
Q  178 ataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||||||||| |||||| | |||||||||||||||| |||||||    
T  16365875 ataggtaacaaaattttgtttaaatttgaagataacaagaaacaaattttgttt 16365822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 17201377 - 17201328
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  17201377 gtaacaaaattttgtttaaatttgaagataacaagaaacaaactttgttt 17201328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 39614983 - 39614927
Alignment:
Q  175 attataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||| ||||||||| |||||| | ||||| ||||||||||||||||||    
T  39614983 attataggtaacacaattttgtttaaatttgaagataataagaaacaaactttgttt 39614927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 43346608 - 43346663
Alignment:
Q  168 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaa 223  Q
    ||||||||||||| |||||||||||||||| ||||||   ||||||||||||||||    
T  43346608 aatcattattatatgtaacaaaattttgtttaaatttgtagataacaagaaacaaa 43346663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 249456 - 249516
Alignment:
Q  168 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||| |||||||||||||||| |||   || |||||||||||||||| |||||||    
T  249456 aatcattattatatgtaacaaaattttgtttaaa---taagataacaagaaacaaattttgttt 249516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 8544685 - 8544734
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||||  ||||| | ||||||||||||||||||||||||    
T  8544685 gtaacaaaattttgtttgaatttgaagataacaagaaacaaactttgttt 8544734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 14967692 - 14967651
Alignment:
Q  163 catggaatcattattataggtaacaaaattttgttaaaattt 204  Q
    ||||||| ||||||||||||||||||||||||||| ||||||    
T  14967692 catggaagcattattataggtaacaaaattttgtttaaattt 14967651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 18413316 - 18413365
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||||| |||||| | |||||||||||||||||| |||||    
T  18413316 gtaacaaaattttgtttaaatttgaagataacaagaaacaaactgtgttt 18413365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 20201803 - 20201754
Alignment:
Q  179 taggtaacaaaattttgttaaaattttaggataacaagaaacaaactttg 228  Q
    ||||||||||||||||||| |||||| | |||||||||||||||| ||||    
T  20201803 taggtaacaaaattttgtttaaatttgaagataacaagaaacaaagtttg 20201754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 42674027 - 42674076
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||| || |||||| | ||||||||||||||||||||||||    
T  42674027 gtaacaaaattttatttaaatttgaagataacaagaaacaaactttgttt 42674076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 8544536 - 8544571
Alignment:
Q  27 gagtcttccactctttattccttttgaacattcatg 62  Q
    |||||||||||||||| |||||||||||||||||||    
T  8544536 gagtcttccactctttcttccttttgaacattcatg 8544571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 17202341 - 17202388
Alignment:
Q  184 aacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||| |||||| | ||||||||||||| ||||||||||    
T  17202341 aacaaaattttgtttaaatttgaagataacaagaaaccaactttgttt 17202388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 32474335 - 32474288
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgt 229  Q
    ||||||||||||| || |||||| | ||||||||||||||||||||||    
T  32474335 gtaacaaaattttatttaaatttgaagataacaagaaacaaactttgt 32474288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 43346471 - 43346509
Alignment:
Q  24 aatgagtcttccactctttattccttttgaacattcatg 62  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  43346471 aatgagtcttccactcttttttctttttgaacattcatg 43346509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 1583597 - 1583548
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||||| || ||| | |||||||| |||||||||||||||    
T  1583597 gtaacaaaattttgtttaagtttgaagataacaaaaaacaaactttgttt 1583548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 32717924 - 32717965
Alignment:
Q  178 ataggtaacaaaattttgttaaaattttaggataacaagaaa 219  Q
    |||||||||||||||||||| |||||| | ||||||||||||    
T  32717924 ataggtaacaaaattttgtttaaatttgaagataacaagaaa 32717965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 36437297 - 36437345
Alignment:
Q  183 taacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||| |||||| | |||||  |||||||||||||||||    
T  36437297 taacaaaattttgtttaaatttgaagataatgagaaacaaactttgttt 36437345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 39585655 - 39585699
Alignment:
Q  23 caatgagtcttccactctttattccttttgaacattcatgcagtc 67  Q
    |||||||||||||||| ||| ||||||||||||||| ||| ||||    
T  39585655 caatgagtcttccactttttcttccttttgaacattaatggagtc 39585699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 196
Target Start/End: Complemental strand, 39888617 - 39888589
Alignment:
Q  168 aatcattattataggtaacaaaattttgt 196  Q
    |||||||||||||||||||||||||||||    
T  39888617 aatcattattataggtaacaaaattttgt 39888589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 3835594 - 3835643
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  3835594 gtaacaaaattttgtttaaatttgaagataacaagaaacaaactttgttt 3835643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 17269625 - 17269571
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaacttt 227  Q
    ||||||||||||||||||||||||||| |||||||| ||||||  ||||||||||||    
T  17269625 cattattataggtaacaaaattttgttgaaattttatgataac--gaaacaaacttt 17269571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 12394287 - 12394239
Alignment:
Q  183 taacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  12394287 taacaaaattttgtttaaatttgatgataacaagaaacaaactttgttt 12394239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 2271863 - 2271902
Alignment:
Q  192 tttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  2271863 tttgtttaaattttaggataacaagaaacaaactttgttt 2271902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 4962870 - 4962929
Alignment:
Q  172 attattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||| |||||||||||||||||||| |||||| | |||||||| ||||||| |||||||    
T  4962870 attatcataggtaacaaaattttgtttaaatttgaagataacaataaacaaattttgttt 4962929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 35793061 - 35793107
Alignment:
Q  185 acaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||| |||||| | ||||||||||||||||||||||||    
T  35793061 acaaaattttgtttaaatttgaagataacaagaaacaaactttgttt 35793107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 4567451 - 4567402
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||||| |||||| | ||||| ||||||||||||||||||    
T  4567451 gtaacaaaattttgtttaaatttgaagataagaagaaacaaactttgttt 4567402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 8614780 - 8614829
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||||| |||||| | |||||||||||||||| |||||||    
T  8614780 gtaacaaaattttgtttaaatttgaagataacaagaaacaaattttgttt 8614829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 12394431 - 12394395
Alignment:
Q  26 tgagtcttccactctttattccttttgaacattcatg 62  Q
    ||||||||||||||||| |||||||||||||||||||    
T  12394431 tgagtcttccactcttttttccttttgaacattcatg 12394395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 14771361 - 14771409
Alignment:
Q  183 taacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||| |||||| | |||||||||||||||| |||||||    
T  14771361 taacaaaattttgtttaaatttgaagataacaagaaacaaattttgttt 14771409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 15221813 - 15221861
Alignment:
Q  183 taacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||| |||||| | |||||||||||||||| |||||||    
T  15221813 taacaaaattttgtttaaatttgaagataacaagaaacaaattttgttt 15221861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 231
Target Start/End: Complemental strand, 15643509 - 15643449
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||| |||| ||||||||||||||| |||||| | |||||||| ||||||| |||||||    
T  15643509 cattatgatagctaacaaaattttgtttaaatttgaagataacaataaacaaattttgttt 15643449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 25290782 - 25290714
Alignment:
Q  163 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||  ||||| | |||||||||||||||||| |||||| | ||||||| |||||||| |||||||    
T  25290782 catggaactattatcacaggtaacaaaattttgtttaaatttgatgataacaggaaacaaattttgttt 25290714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Complemental strand, 16196919 - 16196873
Alignment:
Q  185 acaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||| |||||| | || |||||||||||||||||||||    
T  16196919 acaaaattttgtttaaatttgaagaaaacaagaaacaaactttgttt 16196873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 29664574 - 29664536
Alignment:
Q  24 aatgagtcttccactctttattccttttgaacattcatg 62  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  29664574 aatgagtcttccactcttttttctttttgaacattcatg 29664536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 39427680 - 39427638
Alignment:
Q  20 ttccaatgagtcttccactctttattccttttgaacattcatg 62  Q
    ||||||||||||||||||| ||| || ||||||||||||||||    
T  39427680 ttccaatgagtcttccactatttctttcttttgaacattcatg 39427638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 10534959 - 10535008
Alignment:
Q  182 gtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||||||||| | |||||| | |||||||||||||||||| |||||    
T  10534959 gtaacaaaattttggttaaatttgaagataacaagaaacaaactatgttt 10535008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 6349 - 6405
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaacttt 227  Q
    ||||||||||| ||||||||||||||| |||| ||| |||||||||||| |||||||    
T  6349 cattattatagataacaaaattttgtttaaatattaagataacaagaaataaacttt 6405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 46510 - 46578
Alignment:
Q  163 catggaatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    |||||||  ||||| |||| ||||||||||||||| |||||| | ||| |||||||||||| |||||||    
T  46510 catggaactattatcatagataacaaaattttgtttaaatttgaagatgacaagaaacaaattttgttt 46578  T

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Target: scaffold1130 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 530 - 471
Alignment:
Q  172 attattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||| |||| ||||||||||||||| |||||| | ||| |||||||||||| |||||||    
T  530 attatcatagataacaaaattttgtttaaatttgaagatgacaagaaacaaattttgttt 471  T

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Target: scaffold0841 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0841
Description:

Target: scaffold0841; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 4477 - 4520
Alignment:
Q  24 aatgagtcttccactctttattccttttgaacattcatgcagtc 67  Q
    ||||| ||||||||||||| ||||||||||||||||||| ||||    
T  4477 aatgattcttccactctttcttccttttgaacattcatggagtc 4520  T

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Target: scaffold0242 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 14955 - 14895
Alignment:
Q  168 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttg 228  Q
    ||||||||||||| |||||||||||||| | |||||| | |||||||| ||| ||| ||||    
T  14955 aatcattattatatgtaacaaaattttggttaaatttaaagataacaataaataaattttg 14895  T

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Target: scaffold0242; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 23790 - 23730
Alignment:
Q  168 aatcattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttg 228  Q
    ||||||||||||| |||||||||||||| | |||||| | |||||||| ||| ||| ||||    
T  23790 aatcattattatatgtaacaaaattttggttaaatttaaagataacaataaataaattttg 23730  T

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Target: scaffold0118 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 15171 - 15231
Alignment:
Q  171 cattattataggtaacaaaattttgttaaaattttaggataacaagaaacaaactttgttt 231  Q
    ||||||||||||||||||| ||| ||| |||||| | ||||| ||||||||| ||| ||||    
T  15171 cattattataggtaacaaagtttagtttaaatttgaagataataagaaacaatcttcgttt 15231  T

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