View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3575_high_17 (Length: 236)
Name: NF3575_high_17
Description: NF3575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3575_high_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29820627 - 29820848
Alignment:
| Q |
1 |
acaatttctttatagaattttctatcatgtatattttctttagctaaaaagttagaggagacatctacacatt-aaacattttagcactaataaggatag |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29820627 |
acaatttctttatagaattttctatcatgtatattttctttagctgaaaagttagaggagatatctacacatttaaacattttagcactaataaggatag |
29820726 |
T |
|
| Q |
100 |
tacttacactggagagtcagaggatacacctgccatcnnnnnnngttcatctaaccacctattaacaagacgaggaaaaaattaaaacaattggaaaaac |
199 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29820727 |
tacttacaccggagagtcagaggatacacctgccatctttttttgttcatctaaccacctattaacaagacgaggaaaaaattaaaacaattggaaaaac |
29820826 |
T |
|
| Q |
200 |
aatttcaattgcatataaaact |
221 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
29820827 |
aatttcaattgcatataaaact |
29820848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University