View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3575_high_19 (Length: 217)

Name: NF3575_high_19
Description: NF3575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3575_high_19
NF3575_high_19
[»] chr1 (21 HSPs)
chr1 (5-217)||(5942789-5943027)
chr1 (130-217)||(20582659-20582747)
chr1 (130-217)||(34747719-34747807)
chr1 (157-217)||(11921547-11921608)
chr1 (166-217)||(23647505-23647557)
chr1 (130-217)||(23731895-23731983)
chr1 (166-217)||(42737099-42737151)
chr1 (157-216)||(52020676-52020736)
chr1 (130-217)||(23616174-23616262)
chr1 (157-217)||(29018882-29018943)
chr1 (130-216)||(39506340-39506428)
chr1 (128-217)||(21443033-21443126)
chr1 (157-217)||(22867596-22867658)
chr1 (132-217)||(13522231-13522317)
chr1 (157-216)||(29019370-29019430)
chr1 (166-217)||(37691579-37691631)
chr1 (157-217)||(4652640-4652701)
chr1 (166-217)||(7112231-7112283)
chr1 (181-217)||(19082236-19082272)
chr1 (181-217)||(19130124-19130160)
chr1 (166-215)||(28051726-28051776)
[»] chr8 (12 HSPs)
chr8 (130-217)||(288635-288723)
chr8 (129-217)||(8387797-8387886)
chr8 (157-217)||(16682404-16682465)
chr8 (166-217)||(42709270-42709322)
chr8 (168-217)||(40940671-40940721)
chr8 (156-217)||(41529756-41529818)
chr8 (132-216)||(18307144-18307229)
chr8 (157-217)||(39028629-39028690)
chr8 (179-217)||(1432026-1432064)
chr8 (157-217)||(30438761-30438822)
chr8 (157-217)||(33022350-33022411)
chr8 (179-216)||(24983421-24983458)
[»] chr4 (16 HSPs)
chr4 (160-217)||(44519968-44520026)
chr4 (129-217)||(6201614-6201703)
chr4 (125-217)||(29004488-29004581)
chr4 (157-217)||(36311838-36311899)
chr4 (157-217)||(36326047-36326108)
chr4 (166-216)||(36899411-36899462)
chr4 (157-217)||(3735972-3736033)
chr4 (157-217)||(2832311-2832373)
chr4 (123-217)||(40696530-40696624)
chr4 (179-217)||(728621-728659)
chr4 (179-217)||(36662207-36662245)
chr4 (166-217)||(43318300-43318351)
chr4 (166-217)||(38055099-38055152)
chr4 (157-201)||(19730835-19730880)
chr4 (159-217)||(47526795-47526853)
chr4 (179-217)||(707994-708032)
[»] chr5 (9 HSPs)
chr5 (129-217)||(35169984-35170073)
chr5 (166-217)||(294819-294871)
chr5 (166-217)||(791374-791428)
chr5 (166-217)||(7784319-7784371)
chr5 (166-217)||(19263083-19263135)
chr5 (179-217)||(29241224-29241262)
chr5 (157-217)||(16467464-16467525)
chr5 (157-217)||(33053325-33053387)
chr5 (166-216)||(6829325-6829376)
[»] chr7 (9 HSPs)
chr7 (166-217)||(39778868-39778920)
chr7 (166-217)||(44156145-44156197)
chr7 (168-217)||(31579904-31579954)
chr7 (157-217)||(39957002-39957063)
chr7 (130-217)||(576324-576412)
chr7 (166-217)||(37534486-37534538)
chr7 (166-217)||(38433225-38433277)
chr7 (166-217)||(47396533-47396585)
chr7 (179-216)||(24482167-24482204)
[»] chr3 (12 HSPs)
chr3 (166-216)||(36633952-36634003)
chr3 (166-217)||(40320080-40320132)
chr3 (166-217)||(42934644-42934696)
chr3 (166-217)||(45698359-45698411)
chr3 (166-217)||(45876366-45876418)
chr3 (157-217)||(17476186-17476248)
chr3 (157-217)||(34947984-34948046)
chr3 (167-215)||(9588428-9588477)
chr3 (157-216)||(52107787-52107847)
chr3 (157-217)||(16076002-16076063)
chr3 (166-217)||(43512312-43512364)
chr3 (166-202)||(44162104-44162141)
[»] chr2 (5 HSPs)
chr2 (157-217)||(24079935-24079997)
chr2 (166-217)||(37200074-37200126)
chr2 (166-217)||(44196112-44196165)
chr2 (129-217)||(23865476-23865563)
chr2 (157-216)||(43843614-43843674)
[»] chr6 (1 HSPs)
chr6 (179-217)||(31297845-31297883)
[»] scaffold0004 (1 HSPs)
scaffold0004 (166-217)||(216612-216664)
[»] scaffold0006 (1 HSPs)
scaffold0006 (157-217)||(120222-120283)


Alignment Details
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 217
Target Start/End: Original strand, 5942789 - 5943027
Alignment:
Q  5 aagaagccaggtgataaattcacacacattacgtgtcgataagttggaaatttgggatttgaaacccaacttttgcataaattatccttaattacca--- 101  Q
    ||||| |||| || ||||||||||||||||||||||||||||||| | ||| ||||||| |||  || ||| |||||||| |||||||||||||| |       
T  5942789 aagaaaccagctgttaaattcacacacattacgtgtcgataagtttggaatctgggattcgaactccgactcttgcataacttatccttaattacaaact 5942888  T
Q  102 ----------------acaataaatgttagtctttaattaataaactagtgtatttacccgacattcctgtggttagatt------tattcaagaagat- 178  Q
                    ||||||| |||||||||||||||||||||||||||||||||||||||||| |  |||||||| |      |||||||||||||     
T  5942889 gagctacacttatcggacaataattgttagtctttaattaataaactagtgtatttacccgacatttccctggttagagttagacatattcaagaagata 5942988  T
Q  179 aaaaaattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5942989 aaaaaattatatgtatgatatccgcaaataaaatttatc 5943027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 20582747 - 20582659
Alignment:
Q  130 actagtgtatttacccgacattcctgtggttagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||||| || |   |||||||  ||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  20582747 actagtgtatttacccgacgttgcccgggttagacatattcaagaagataaaaaaattatatgtatgatatctgcaaataaaatttatc 20582659  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 34747719 - 34747807
Alignment:
Q  130 actagtgtatttacccgacattcctgtggttagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||| ||| |||| ||  |||||||  ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  34747719 actagtgtatttatccggcattgctcgggttagacatattcaagaagataaaaaaattatgtgtatgatatccgcaaataaaatttatc 34747807  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 11921547 - 11921608
Alignment:
Q  157 ggttagatttattcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11921547 ggttagacatattcaagaagataaaaaaattatatgtatgatatccgcaaataaaatttatc 11921608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 23647557 - 23647505
Alignment:
Q  166 tattcaagaagataaa-aaattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23647557 tattcaagaagataaacaaattatatgtatgatatccgcaaataaaatttatc 23647505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 23731983 - 23731895
Alignment:
Q  130 actagtgtatttacccgacattcctgtggttagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||| | || ||  | |||||  ||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  23731983 actagtgtatttacccggcgttgctcggattagacatattcaagaagataaaaaaattatatgtatgatatccgcaagtaaaatttatc 23731895  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 42737151 - 42737099
Alignment:
Q  166 tattcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42737151 tattcaagaagataaaataattatatgtatgatatccgcaaataaaatttatc 42737099  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 52020676 - 52020736
Alignment:
Q  157 ggttagatttattcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttat 216  Q
    |||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  52020676 ggttagacatattcaagaagataaaaaaattatatgtatgatatccgcaaataaaatttat 52020736  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 23616262 - 23616174
Alignment:
Q  130 actagtgtatttacccgacatt-cctgtggttagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||| | || |||| | |||||  ||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  23616262 actagtgtatttacccggcgtttcctg-gattagacatattcaagaagataaaaaaattacatgtatgatatccgcaaataaaatttatc 23616174  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 29018943 - 29018882
Alignment:
Q  157 ggttagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||  ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  29018943 ggttagacatattcaagaagataaaaaaattatttgtatgatatccgcaaataaaatttatc 29018882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 216
Target Start/End: Complemental strand, 39506428 - 39506340
Alignment:
Q  130 actagtgtatttacccgacattcctgtggttagatttattcaagaagataaaaaa--ttatatgtatgatatccgcaaataaaatttat 216  Q
    ||||||||||||||||| | || |   |||||||  |||||||||||||||||||  |||||||||||||||||| |||||||||||||    
T  39506428 actagtgtatttacccggcgttgcccgggttagaaatattcaagaagataaaaaaaattatatgtatgatatccgaaaataaaatttat 39506340  T

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Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 21443033 - 21443126
Alignment:
Q  128 aaactagtgtatttacccgacattcctgtggttagatttattcaagaagataaaa----aattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||||||| |||||| | ||  |  |||||||  |||||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  21443033 aaactagtgtatctacccggcgtttttcgggttagacatattcaagaagataaaaaaaaaattatatgtatgatatccgcaaataaaatttatc 21443126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 22867596 - 22867658
Alignment:
Q  157 ggttagatttattcaagaagataaaa--aattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||  |||||||||||||||||  ||||||||||||||||||| |||||||||||||||    
T  22867596 ggttagacatattcaagaagataaaaaaaattatatgtatgatatccacaaataaaatttatc 22867658  T

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Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 217
Target Start/End: Original strand, 13522231 - 13522317
Alignment:
Q  132 tagtgtatttacccgacattcctgtggttagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||| | || |   ||||| || ||||||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  13522231 tagtgtatttacccggcgttgcccgggttacatatattcaagaagataaaaaacttatatgtatgatatctacaaataaaatttatc 13522317  T

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Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 29019430 - 29019370
Alignment:
Q  157 ggttagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttat 216  Q
    |||||||  ||||||||||||||||||| |||||| ||| |||||||||||||||||||||    
T  29019430 ggttagacatattcaagaagataaaaaaattatatatataatatccgcaaataaaatttat 29019370  T

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Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 37691579 - 37691631
Alignment:
Q  166 tattcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||| |||||||| ||| ||||||||||||||||||||||    
T  37691579 tattcaagaagataaaaaaattatatatattatatccgcaaataaaatttatc 37691631  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 4652701 - 4652640
Alignment:
Q  157 ggttagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||  ||||||||| ||||||||| |||||| |||||| |||||||||||||||||||    
T  4652701 ggttagacatattcaagatgataaaaaaattatatctatgatgtccgcaaataaaatttatc 4652640  T

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Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 7112231 - 7112283
Alignment:
Q  166 tattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||||| ||| ||||||||||| || ||||||||||||||    
T  7112231 tattcaagaagataaaaaaattacatgtatgatattcgtaaataaaatttatc 7112283  T

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Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 19082272 - 19082236
Alignment:
Q  181 aaaattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||||||||||||||| ||||||||||||||||    
T  19082272 aaaattatatgtatgatatctgcaaataaaatttatc 19082236  T

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Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 19130160 - 19130124
Alignment:
Q  181 aaaattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||||||||||||||| ||||||||||||||||    
T  19130160 aaaattatatgtatgatatctgcaaataaaatttatc 19130124  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 28051776 - 28051726
Alignment:
Q  166 tattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaattta 215  Q
    ||||||||||||||||||| |||||| ||| ||||| ||||||||||||||    
T  28051776 tattcaagaagataaaaaaattatatatataatatctgcaaataaaattta 28051726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 288723 - 288635
Alignment:
Q  130 actagtgtatttacccgacattcctgtggttagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||| | || |   |||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  288723 actagtgtatttacccggcgttgcccaggttagacatattcaagaagataaaaaaattatatgtatgatatccgcaaataaaatttatc 288635  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 8387797 - 8387886
Alignment:
Q  129 aactagtgtatttacccgacattcctgtggttagatttattcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||||||||||||||| ||  |   ||||||  ||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  8387797 aactagtgtatttacccgacgttgttccagttagacatattcaagaagataaaaaaattataagtatgatatccgcaaataaaatttatc 8387886  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 16682465 - 16682404
Alignment:
Q  157 ggttagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16682465 ggttagacatattcaagaagataaaaaaattatatgtatgatatccgcaaataaaatttatc 16682404  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 42709322 - 42709270
Alignment:
Q  166 tattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42709322 tattcaagaagataaaaaaattatatgtatgatatccgcaaataaaatttatc 42709270  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 40940721 - 40940671
Alignment:
Q  168 ttcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40940721 ttcaagaagataaaaaaattatatgtatgatatccgcaaataaaatttatc 40940671  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 41529818 - 41529756
Alignment:
Q  156 tggttagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||  |||| |||||||||||||| |||||||||||||||||| ||||||||||||||    
T  41529818 tggttagacatatttaagaagataaaaaaattatatgtatgatatccgaaaataaaatttatc 41529756  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 18307144 - 18307229
Alignment:
Q  132 tagtgtatttacccgacattcctgtggttagatttattcaagaagat-aaaaaattatatgtatgatatccgcaaataaaatttat 216  Q
    ||||||||||||||| | || |   |||||||  ||||||||||||| |||||||| ||||||| |||||||||||||||||||||    
T  18307144 tagtgtatttacccggcgttgcccgggttagacatattcaagaagatcaaaaaattctatgtattatatccgcaaataaaatttat 18307229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 39028690 - 39028629
Alignment:
Q  157 ggttagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||  ||||||||||||||||||| || ||||||||||| ||||||||||||||||||    
T  39028690 ggttagacatattcaagaagataaaaaaattgtatgtatgatacccgcaaataaaatttatc 39028629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 1432064 - 1432026
Alignment:
Q  179 aaaaaattatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  1432064 aaaaaattatatgtatggtatccgcaaataaaatttatc 1432026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 30438822 - 30438761
Alignment:
Q  157 ggttagatttattcaagaagat-aaaaaattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||  ||||||||||||| |||||||| |||||||||||||| |||||||| ||||||    
T  30438822 ggttagacatattcaagaagatcaaaaaattctatgtatgatatccacaaataaattttatc 30438761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 33022411 - 33022350
Alignment:
Q  157 ggttagatttattcaagaagataaaaaatta-tatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||| ||||||||||||| |||||||  |||||||||||||| |||||||| ||||||    
T  33022411 ggttagatatattcaagaagatcaaaaatttctatgtatgatatccacaaataaattttatc 33022350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 24983458 - 24983421
Alignment:
Q  179 aaaaaattatatgtatgatatccgcaaataaaatttat 216  Q
    |||||||||||||||||||||||  |||||||||||||    
T  24983458 aaaaaattatatgtatgatatccataaataaaatttat 24983421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 44520026 - 44519968
Alignment:
Q  160 tagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44520026 tagatatattcaagaagataaaaaaattatatgtatgatatccgcaaataaaatttatc 44519968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 6201614 - 6201703
Alignment:
Q  129 aactagtgtatttacccgacattcctgtggttagatttattcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||||||||||||  | || ||  |||||||  ||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  6201614 aactagtgtatttacccagcgttgctcgggttagacatattcaataagataaaaaaattatatgtatgatatccgcaaataaaatttatc 6201703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 29004488 - 29004581
Alignment:
Q  125 aataaactagtgtatttacccgacattcctgtggttagatttattcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||||||||||||| ||| | || |   |||||||  ||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  29004488 aataaactagtgtatttatccggcgttgcccgggttagacatattcaagaagataaaaaaattatatttatgatatccgcaaataaaatttatc 29004581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 36311899 - 36311838
Alignment:
Q  157 ggttagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36311899 ggttagacatattcaagaagataaaaaaattatatgtatgatatccgcaaataaaatttatc 36311838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 36326108 - 36326047
Alignment:
Q  157 ggttagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36326108 ggttagacatattcaagaagataaaaaaattatatgtatgatatccgcaaataaaatttatc 36326047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 36899462 - 36899411
Alignment:
Q  166 tattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttat 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36899462 tattcaagaagataaaaaaattatatgtatgatatccgcaaataaaatttat 36899411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 3736033 - 3735972
Alignment:
Q  157 ggttagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  3736033 ggttagacatattcaagaagataaaaaaattatatgtatgatatccgcgaataaaatttatc 3735972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 2832311 - 2832373
Alignment:
Q  157 ggttagatttattcaagaagataaaa--aattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||  |||||||||||||||||  ||||||||||||||||||||||||||||| |||||    
T  2832311 ggttagacatattcaagaagataaaaaaaattatatgtatgatatccgcaaataaaaattatc 2832373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 40696624 - 40696530
Alignment:
Q  123 ttaataaactagtgtatttacccgacattcctgtggttagatttattcaagaagataaa-aaattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||| ||||||||||||| ||| | ||  |  |||||||  |||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  40696624 ttaatatactagtgtatttatccggcgttattcgggttagacatattcaagaagataaacaaattatatgtatgata-ccgcaaataaaatttatc 40696530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 728621 - 728659
Alignment:
Q  179 aaaaaattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||||||||||||||||||||||||||||||||||    
T  728621 aaaaaattatatgtatgatatccgcaaataaaatttatc 728659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 36662245 - 36662207
Alignment:
Q  179 aaaaaattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36662245 aaaaaattatatgtatgatatccgcaaataaaatttatc 36662207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 43318300 - 43318351
Alignment:
Q  166 tattcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  43318300 tattcaagaagataaaaaaattatatgtatgatat-cgcaaataaaatttatc 43318351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 38055152 - 38055099
Alignment:
Q  166 tattcaagaagataaaaaa--ttatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||||||||||||||  ||||||| | |||||||||||||||||||||||    
T  38055152 tattcaagaagataaaaaaaattatatgaaagatatccgcaaataaaatttatc 38055099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Original strand, 19730835 - 19730880
Alignment:
Q  157 ggttagatttattcaagaagat-aaaaaattatatgtatgatatcc 201  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||    
T  19730835 ggttagacttattcaagaagatgaaaaaattatatgtatgatatcc 19730880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 47526853 - 47526795
Alignment:
Q  159 ttagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||| ||||||||||||||||||| ||||||||||||||| | | |||||||||||||    
T  47526853 ttagatatattcaagaagataaaaaaattatatgtatgatat-ctctaataaaatttatc 47526795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 708032 - 707994
Alignment:
Q  179 aaaaaattatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  708032 aaaaaattatatgtacgatatctgcaaataaaatttatc 707994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 35170073 - 35169984
Alignment:
Q  129 aactagtgtatttacccgacattcctgtggttagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||||||||| ||| | || ||   ||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35170073 aactagtgtatttatccggcgttgctcgagttagacatattcaagaagataaaaaaattatatgtatgatatccgcaaataaaatttatc 35169984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 294871 - 294819
Alignment:
Q  166 tattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  294871 tattcaagaagataaaaaaattatatgtatgaaatccgcaaataaaatttatc 294819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 791428 - 791374
Alignment:
Q  166 tattcaagaagataaaaaa---ttatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  791428 tattcaagaagataaaaaaaaattatatgtatgatatccgcaaataaaatttatc 791374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 7784371 - 7784319
Alignment:
Q  166 tattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  7784371 tattcaagaagataaaaaaattatatgtatgatatccacaaataaaatttatc 7784319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 19263083 - 19263135
Alignment:
Q  166 tattcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  19263083 tattcaaaaagataaaagaattatatgtatgatatccgcaaataaaatttatc 19263135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 29241262 - 29241224
Alignment:
Q  179 aaaaaattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29241262 aaaaaattatatgtatgatatccgcaaataaaatttatc 29241224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 16467525 - 16467464
Alignment:
Q  157 ggttagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||  ||||||||||||||||||| ||||||||||| ||| |||||||||||||||||    
T  16467525 ggttagacatattcaagaagataaaaaaattatatgtatgttattcgcaaataaaatttatc 16467464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 33053387 - 33053325
Alignment:
Q  157 ggttagatttattcaagaagataaaaaa--ttatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||  |||| ||||||||||||||  ||||||| |||||||||||||||||||||||||    
T  33053387 ggttagacatatttaagaagataaaaaaaattatatgcatgatatccgcaaataaaatttatc 33053325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 6829376 - 6829325
Alignment:
Q  166 tattcaagaagataaaaa-attatatgtatgatatccgcaaataaaatttat 216  Q
    |||| ||||||||||||| |||||||||||||||| || |||||||||||||    
T  6829376 tatttaagaagataaaaatattatatgtatgatattcgtaaataaaatttat 6829325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 39778920 - 39778868
Alignment:
Q  166 tattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39778920 tattcaagaagataaaaaaattatatgtatgatatccgcaaataaaatttatc 39778868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 44156197 - 44156145
Alignment:
Q  166 tattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44156197 tattcaagaagataaaaaaattatatgtatgatatccgcaaataaaatttatc 44156145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 31579904 - 31579954
Alignment:
Q  168 ttcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31579904 ttcaagaagataaaaaaattatatgtatgatatccgcaaataaaatttatc 31579954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 39957002 - 39957063
Alignment:
Q  157 ggttagatttattcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||  ||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  39957002 ggttagacatattcaagaagataaaaaaattatatgtatgatatctgcaaataaaatttatc 39957063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 576324 - 576412
Alignment:
Q  130 actagtgtatttacccgacattcctgtggttagatttattcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||| | || |   |||||||  ||||||||||||||||| |||||||| ||||||||| ||||||||||||||||    
T  576324 actagtgtatttacccggcgttgcccgggttagacatattcaagaagataaaaaaattatatatatgatatctgcaaataaaatttatc 576412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 37534486 - 37534538
Alignment:
Q  166 tattcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  37534486 tattcaagaagataaaaaaattatatgtatgatatctgcaaataaaatttatc 37534538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 38433225 - 38433277
Alignment:
Q  166 tattcaagaagat-aaaaaattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  38433225 tatttaagaagatgaaaaaattatatgtatgatatccgcaaataaaatttatc 38433277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 47396585 - 47396533
Alignment:
Q  166 tattcaagaagataaaaaat-tatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  47396585 tattcaagaagataaaaaaaatatatgtatgatatccgcaaataaaatttatc 47396533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 24482204 - 24482167
Alignment:
Q  179 aaaaaattatatgtatgatatccgcaaataaaatttat 216  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  24482204 aaaaaattatatgtatgatattcgcaaataaaatttat 24482167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 36634003 - 36633952
Alignment:
Q  166 tattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttat 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36634003 tattcaagaagataaaaaaattatatgtatgatatccgcaaataaaatttat 36633952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 40320132 - 40320080
Alignment:
Q  166 tattcaagaagataaaaa-attatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  40320132 tattcaagaagataaaaacattatatgtataatatccgcaaataaaatttatc 40320080  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 42934696 - 42934644
Alignment:
Q  166 tattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  42934696 tattcaagaagataaaaaaattatatgtatgatattcgcaaataaaatttatc 42934644  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 45698359 - 45698411
Alignment:
Q  166 tattcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  45698359 tattcaagaagataaaaaaattatatgtatgatatccacaaataaaatttatc 45698411  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 45876366 - 45876418
Alignment:
Q  166 tattcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  45876366 tattcaagaagataaaaaaattatatctatgatatccgcaaataaaatttatc 45876418  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 17476248 - 17476186
Alignment:
Q  157 ggttagatttattcaagaagataaaaaa--ttatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||  |||||||||||||||||||  ||||||||||||||| |||||||||||||||||    
T  17476248 ggttagacatattcaagaagataaaaaaaattatatgtatgatattcgcaaataaaatttatc 17476186  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 34948046 - 34947984
Alignment:
Q  157 ggttagatttattcaagaagataaaaaa--ttatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||  |||||||||||||||||||  ||||||||||||||||||| |||||||||||||    
T  34948046 ggttagacatattcaagaagataaaaaaaattatatgtatgatatccgcgaataaaatttatc 34947984  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 9588477 - 9588428
Alignment:
Q  167 attcaagaagataaa-aaattatatgtatgatatccgcaaataaaattta 215  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  9588477 attcaagaagataaagaaattatatatatgatatccgcaaataaaattta 9588428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 52107847 - 52107787
Alignment:
Q  157 ggttagatttattcaagaagataaaaaa-ttatatgtatgatatccgcaaataaaatttat 216  Q
    |||||||  ||||||||||||||||||| |||||||||||||||||  |||||||||||||    
T  52107847 ggttagacatattcaagaagataaaaaaattatatgtatgatatccataaataaaatttat 52107787  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 16076002 - 16076063
Alignment:
Q  157 ggttagatttattcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||  |||| |||||||||||| |||||||||||||||| || |||||||||||||||    
T  16076002 ggttagacatatttaagaagataaaaaaattatatgtatgataaccacaaataaaatttatc 16076063  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 43512312 - 43512364
Alignment:
Q  166 tattcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  43512312 tattctagaagataaaaaaattatatgtttgatatccgtaaataaaatttatc 43512364  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 44162104 - 44162141
Alignment:
Q  166 tattcaagaagataaaa-aattatatgtatgatatccg 202  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  44162104 tattcaagaagataaaaaaattatatgtatgatatccg 44162141  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 24079997 - 24079935
Alignment:
Q  157 ggttagatttattcaagaagataaaaaa--ttatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||  |||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  24079997 ggttagacatattcaagaagataaaaaaaattatatgtatgatatccgcaaataaaatttatc 24079935  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 37200074 - 37200126
Alignment:
Q  166 tattcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  37200074 tattcaagaagataaaaaaattataagtatgatatccgcaaataaaatttatc 37200126  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 44196112 - 44196165
Alignment:
Q  166 tattcaagaagataaaa--aattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| |||||    
T  44196112 tattcaagaagataaaaaaaattatatgtatgatatccgcaaataaaaattatc 44196165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 23865476 - 23865563
Alignment:
Q  129 aactagtgtatttacccgacattcctgtggttagatttattcaagaagataaaaaattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||||||||||||| | || |   |||||||  |||| |||||||||||||| | |||||||||||||| |||||||||||||||    
T  23865476 aactagtgtatttacccggcgttgcccgggttagacatatttaagaagataaaaaaat-tatgtatgatatccacaaataaaatttatc 23865563  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 43843674 - 43843614
Alignment:
Q  157 ggttagatttattcaagaagat-aaaaaattatatgtatgatatccgcaaataaaatttat 216  Q
    |||||||  ||||||||||||| |||||||| |||||||||||||| ||||||||||||||    
T  43843674 ggttagacatattcaagaagatcaaaaaattctatgtatgatatccacaaataaaatttat 43843614  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 31297845 - 31297883
Alignment:
Q  179 aaaaaattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31297845 aaaaaattatatgtatgatatccgcaaataaaatttatc 31297883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 216612 - 216664
Alignment:
Q  166 tattcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttatc 217  Q
    ||||||||||||||||| ||||||| ||||||||| |||||||||||||||||    
T  216612 tattcaagaagataaaaaaattataagtatgatattcgcaaataaaatttatc 216664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 120222 - 120283
Alignment:
Q  157 ggttagatttattcaagaagataaaa-aattatatgtatgatatccgcaaataaaatttatc 217  Q
    |||||||  ||||||||||||||||| |||||||||||| ||||  ||||||||||||||||    
T  120222 ggttagacatattcaagaagataaaaaaattatatgtataatatttgcaaataaaatttatc 120283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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