View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3575_high_3 (Length: 457)

Name: NF3575_high_3
Description: NF3575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3575_high_3
NF3575_high_3
[»] chr4 (4 HSPs)
chr4 (11-439)||(54396372-54396800)
chr4 (12-436)||(23587525-23587949)
chr4 (12-436)||(23596377-23596801)
chr4 (12-86)||(35132750-35132824)
[»] chr7 (22 HSPs)
chr7 (11-433)||(8017204-8017626)
chr7 (12-418)||(8102637-8103043)
chr7 (12-439)||(39985595-39986022)
chr7 (12-82)||(7877525-7877595)
chr7 (264-424)||(8570275-8570435)
chr7 (264-424)||(8581664-8581824)
chr7 (12-133)||(8602229-8602350)
chr7 (12-132)||(8590894-8591014)
chr7 (15-86)||(17260543-17260614)
chr7 (12-86)||(10494166-10494240)
chr7 (21-82)||(8382677-8382738)
chr7 (15-58)||(6789842-6789885)
chr7 (12-86)||(3147574-3147648)
chr7 (15-145)||(8585501-8585631)
chr7 (12-82)||(8636135-8636205)
chr7 (12-86)||(13333248-13333322)
chr7 (260-349)||(7877773-7877862)
chr7 (15-55)||(1301797-1301837)
chr7 (297-421)||(8590605-8590729)
chr7 (261-325)||(8609980-8610044)
chr7 (247-311)||(8628609-8628673)
chr7 (11-55)||(8659696-8659740)
[»] chr2 (12 HSPs)
chr2 (12-148)||(17716485-17716621)
chr2 (90-223)||(5445621-5445754)
chr2 (12-81)||(12234996-12235065)
chr2 (354-426)||(12258715-12258787)
chr2 (12-79)||(12245198-12245265)
chr2 (279-364)||(17705797-17705882)
chr2 (279-416)||(17716746-17716883)
chr2 (14-58)||(7542556-7542600)
chr2 (279-326)||(17648100-17648147)
chr2 (279-326)||(17666742-17666789)
chr2 (12-82)||(16657309-16657379)
chr2 (279-377)||(17718010-17718108)
[»] chr1 (1 HSPs)
chr1 (11-82)||(4678349-4678420)


Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 11 - 439
Target Start/End: Complemental strand, 54396800 - 54396372
Alignment:
Q  11 gaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396800 gaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatt 54396701  T
Q  111 attaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396700 attaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaa 54396601  T
Q  211 ctttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgataacagaat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396600 ctttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgataacagaat 54396501  T
Q  311 ggtgaatcattttgtttcggagtttaggaggaaaaataagaaggatattagtggtaatgcaagagctttgaggagattaagaacagcttgtgagagagct 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396500 ggtgaatcattttgtttcggagtttaggaggaaaaataagaaggatattagtggtaatgcaagagctttgaggagattaagaacagcttgtgagagagct 54396401  T
Q  411 aagagaacactttcttcaactgctcagac 439  Q
    |||||||||||||||||||||||||||||    
T  54396400 aagagaacactttcttcaactgctcagac 54396372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 12 - 436
Target Start/End: Original strand, 23587525 - 23587949
Alignment:
Q  12 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 111  Q
    |||||||| ||||| ||||| |||||||| ||||| ||||| |||||||||||||| |||||||| ||||  ||||| ||  | ||||||||||| ||||    
T  23587525 aagaatgccgttgtaactgtgcctgcttacttcaacgattcacaacgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaatta 23587624  T
Q  112 ttaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaac 211  Q
    ||||||| ||||| |||||||| |||||||||||| | |||||||||||| | || |  || ||  ||||||| |||||||| ||  | || ||||||||    
T  23587625 ttaatgaacctaccgctgctgctattgcttatggtcttgataagaaagctacaagcacgggtgagaagaacgttcttattttcgatcttggtggtggaac 23587724  T
Q  212 tttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgataacagaatg 311  Q
    ||| |||||||| || ||||||||||| ||||| ||||| || || |||||||| ||||||||||| ||| | || |||||||||||||||||||| |||    
T  23587725 ttttgatgtttccctacttactattgaggaaggtatctttgaggtcaaagctacagctggtgatacacatttgggaggtgaagattttgataacaggatg 23587824  T
Q  312 gtgaatcattttgtttcggagtttaggaggaaaaataagaaggatattagtggtaatgcaagagctttgaggagattaagaacagcttgtgagagagcta 411  Q
    ||||| |||||||||   || || | |||||| |||||||||||||||||||| ||| |||| ||| | || ||||| ||||| ||||| ||||||||||    
T  23587825 gtgaaccattttgttcaagaattcaagaggaagaataagaaggatattagtggaaatccaagggctcttagaagattgagaactgcttgcgagagagcta 23587924  T
Q  412 agagaacactttcttcaactgctca 436  Q
    |||| || ||||| || ||||||||    
T  23587925 agaggaccctttcctctactgctca 23587949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 12 - 436
Target Start/End: Original strand, 23596377 - 23596801
Alignment:
Q  12 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 111  Q
    |||||||| ||||| || || ||||| || ||||| ||||| |||||||||||||| || ||||||||||  ||||| ||  | |||||| |||| ||||    
T  23596377 aagaatgccgttgtaaccgtgcctgcatacttcaacgattcacaacgtcaagctactaaggatgctggtgtcatttctggactcaatgtgatgagaatta 23596476  T
Q  112 ttaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaac 211  Q
    |||| ||||| |||||||| || |||||||||||| | |||||||||||| | || |  || ||  ||||||| |||||||| ||  | || ||||||||    
T  23596477 ttaacgagcccactgctgccgctattgcttatggtcttgataagaaagctacaagtactggtgagaagaacgttcttattttcgatcttggtggtggaac 23596576  T
Q  212 tttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgataacagaatg 311  Q
    ||| |||||||| |||||||||||||| ||||| ||||| || ||||||||||| ||||||||||| ||| | || |||||||||||||||||||| |||    
T  23596577 ttttgatgtttcacttcttactattgaggaaggtatctttgaggtgaaagctacagctggtgatacacatttgggaggtgaagattttgataacaggatg 23596676  T
Q  312 gtgaatcattttgtttcggagtttaggaggaaaaataagaaggatattagtggtaatgcaagagctttgaggagattaagaacagcttgtgagagagcta 411  Q
    ||||| |||||||||   || || | |||||| |||||||| ||||||||||| ||| |||| ||| | || || || ||||| ||||||||||||||||    
T  23596677 gtgaaccattttgttcaagaattcaagaggaagaataagaaagatattagtggaaatccaagggctcttagaaggttgagaactgcttgtgagagagcta 23596776  T
Q  412 agagaacactttcttcaactgctca 436  Q
    |||| || ||||| || ||||||||    
T  23596777 agaggactctttcctctactgctca 23596801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 35132824 - 35132750
Alignment:
Q  12 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 86  Q
    |||||||| ||||||||||| ||||||||||| | ||||||||||||  |||| || | ||||||||||||||||    
T  35132824 aagaatgcagttgttactgtgcctgcttattttagtgattctcaacgaaaagccactatagatgctggtgctatt 35132750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 433
Target Start/End: Original strand, 8017204 - 8017626
Alignment:
Q  11 gaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatt 110  Q
    ||||||||| |||||||| ||||| ||||| ||||||||||| || |||||||| || || ||||| ||||  ||| | ||  | ||||| ||||| |||    
T  8017204 gaagaatgccgttgttacagttccagcttacttcaatgattcgcagcgtcaagccacaaaggatgccggtgtcattgcaggactcaatgttttgagaatt 8017303  T
Q  111 attaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaa 210  Q
    || || ||||| || ||||| || ||||| || ||  | || || || ||| | ||    |||||  |||| ||| | || ||||||||||||||||| |    
T  8017304 atcaacgagccaacagctgcagctattgcgtacggacttgacaaaaaggctacaagtgttggcgagaagaatgtgttgatctttgacttgggaggtggta 8017403  T
Q  211 ctttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgataacagaat 310  Q
    |||| ||||| |||||||||||||||||||| || || || ||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  8017404 cttttgatgtgtctcttcttactattgaagagggtatttttgaagttaaggctactgctggtgatacccatcttggtggtgaagattttgacaacagaat 8017503  T
Q  311 ggtgaatcattttgtttcggagtttaggaggaaaaataagaaggatattagtggtaatgcaagagctttgaggagattaagaacagcttgtgagagagct 410  Q
    ||| ||||||||||||  |||||||| |||||| || ||||||||||||||||| ||  | |||||  | ||||| || || |||||||||||||||||     
T  8017504 ggttaatcattttgttcaggagtttaagaggaagaacaagaaggatattagtggaaaccctagagcacttaggaggttgaggacagcttgtgagagagcg 8017603  T
Q  411 aagagaacactttcttcaactgc 433  Q
    |||||||| || ||||| |||||    
T  8017604 aagagaactctctcttctactgc 8017626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 12 - 418
Target Start/End: Complemental strand, 8103043 - 8102637
Alignment:
Q  12 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 111  Q
    |||||||| || || ||||| |||||||| |||||||||||||| |||||||| || ||||||||||||| |||  | ||||| ||||| ||||| ||||    
T  8103043 aagaatgccgtcgtcactgtccctgcttacttcaatgattctcagcgtcaagcaactaaagatgctggtgttatcgctggtttaaatgttttgagaatta 8102944  T
Q  112 ttaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaac 211  Q
    |||||||||| ||||||||||| ||||| || ||| | || || || ||  | ||    || ||  |||||||| | || ||||| ||||| ||||| ||    
T  8102943 ttaatgagccaactgctgctgctattgcctacggtcttgacaaaaaggcgacaagtgttggtgagaagaacgtgttgatctttgatttgggtggtggtac 8102844  T
Q  212 tttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgataacagaatg 311  Q
    ||| ||||| || ||||||||||||||||| || || || ||||| || |||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  8102843 ttttgatgtgtcacttcttactattgaagagggtatatttgaagttaaggctactgcaggtgatacccatcttggtggtgaagattttgataacagaatg 8102744  T
Q  312 gtgaatcattttgtttcggagtttaggaggaaaaataagaaggatattagtggtaatgcaagagctttgaggagattaagaacagcttgtgagagagcta 411  Q
    || |  |||||||||   ||||||| |||||| || |||||||||||||| || ||  | || ||  | |||||||| ||||| || ||||||||||| |    
T  8102743 gttacccattttgttcaagagtttaagaggaagaacaagaaggatattagcggaaaccctagggcacttaggagattgagaaccgcatgtgagagagcga 8102644  T
Q  412 agagaac 418  Q
    |||||||    
T  8102643 agagaac 8102637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 439
Target Start/End: Complemental strand, 39986022 - 39985595
Alignment:
Q  12 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 111  Q
    |||||||||||||||||||| |||||||| || ||||| || || ||||||||||| || |||||||| | |||| | ||| | |||||  || | ||||    
T  39986022 aagaatgctgttgttactgtccctgcttactttaatgactcccagcgtcaagctaccaaggatgctggagttattgccggtcttaatgtcatgcgaatta 39985923  T
Q  112 ttaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaac 211  Q
    | |||||||| ||||||||||| |||||||||||| | || ||||||||  | ||    || ||  |||| ||  | || |||||| | || ||||| ||    
T  39985922 tcaatgagcccactgctgctgccattgcttatggtcttgacaagaaagcaaccagtgttggagagaagaatgtcttgatctttgaccttggtggtggtac 39985823  T
Q  212 tttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgataacagaatg 311  Q
    ||| ||||| ||| | || ||||||||||| || ||||| || |||||||| || || || || || |||||||| ||||| |||||||| |||||||||    
T  39985822 ttttgatgtctctttgctaactattgaagagggtatctttgaggtgaaagccacagccggagacacccatcttggaggtgaggattttgacaacagaatg 39985723  T
Q  312 gtgaatcattttgtttcggagtttaggaggaaaaataagaaggatattagtggtaatgcaagagctttgaggagattaagaacagcttgtgagagagcta 411  Q
    ||||| || ||||||   ||||| | ||| || || |||||||| || ||||| ||  | |||||| | ||||| || || || |||||||| ||||| |    
T  39985722 gtgaaccactttgttcaagagttcaagagaaagaacaagaaggacatcagtggcaaccccagagctcttaggaggttgaggactgcttgtgaaagagcga 39985623  T
Q  412 agagaacactttcttcaactgctcagac 439  Q
    ||||||| || ||||| ||||| |||||    
T  39985622 agagaactctctcttctactgcccagac 39985595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 7877525 - 7877595
Alignment:
Q  12 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 82  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||  |||| || ||||||||||||||    
T  7877525 aagaatgcagttgttactgtgccggcttatttcaatgattctcaacgaaaagccacaaaagatgctggtgc 7877595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 424
Target Start/End: Complemental strand, 8570435 - 8570275
Alignment:
Q  264 actgctggtgatactcatcttggtggtgaagattttgataacagaatggtgaatcattttgtttcggagtttaggaggaaaaataagaaggatattagtg 363  Q
    |||||||| || ||||| || || |||||||||||||||||||||||| ||| ||| |||||   | |||| | || ||| || ||  |||||||||||     
T  8570435 actgctggagacactcacctgggaggtgaagattttgataacagaatgttgactcactttgtgaagaagttcaagaagaagaacaacgaggatattagta 8570336  T
Q  364 gtaatgcaagagctttgaggagattaagaacagcttgtgagagagctaagagaacactttc 424  Q
    | ||  ||| ||| |||||||| |||||||||||||||||||| || || || ||||||||    
T  8570335 ggaacccaaaagccttgaggaggttaagaacagcttgtgagagggcaaaaaggacactttc 8570275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 424
Target Start/End: Complemental strand, 8581824 - 8581664
Alignment:
Q  264 actgctggtgatactcatcttggtggtgaagattttgataacagaatggtgaatcattttgtttcggagtttaggaggaaaaataagaaggatattagtg 363  Q
    |||||||| || ||||| || || || ||||||||||||||||||||||||||||| ||||| |||||||| | ||| ||| ||||  |||| |||| ||    
T  8581824 actgctggagacactcacctgggaggggaagattttgataacagaatggtgaatcactttgtgtcggagttcaagagaaaacataaagaggagattattg 8581725  T
Q  364 gtaatgcaagagctttgaggagattaagaacagcttgtgagagagctaagagaacactttc 424  Q
    | ||| ||| |||  | || || || || || |||||||||||||| || || ||||||||    
T  8581724 gaaatccaaaagccattagaaggttgaggactgcttgtgagagagcgaaaaggacactttc 8581664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 8602350 - 8602229
Alignment:
Q  12 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 111  Q
    |||||||| ||||||||||| || |||||||| ||||||||||| ||  |||| || |||||||||||||| ||| | ||| | |||||  || |||| |    
T  8602350 aagaatgcagttgttactgtgccggcttattttaatgattctcagcgaaaagccacaaaagatgctggtgccattgctggtctcaatgtaatgcggataa 8602251  T
Q  112 ttaatgagcctactgctgctgc 133  Q
    | |||||||| ||||| |||||    
T  8602250 tcaatgagccaactgcagctgc 8602229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 8591014 - 8590894
Alignment:
Q  12 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 111  Q
    |||||||| ||||||||||| || |||||||| |||||||||||  |  ||||||| |||||||||||||  ||| | || ||||||||  || |||| |    
T  8591014 aagaatgcagttgttactgtgccagcttattttaatgattctcagaggaaagctaccaaagatgctggtgtcattgctggcttgaatgtaatgcggataa 8590915  T
Q  112 ttaatgagcctactgctgctg 132  Q
    ||||||| || ||||| ||||    
T  8590914 ttaatgaaccaactgccgctg 8590894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 17260614 - 17260543
Alignment:
Q  15 aatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 86  Q
    |||| |||| ||||||||||||||||||||||||||||||| ||  |||| || | ||||||||||| ||||    
T  17260614 aatgttgttattactgttcctgcttatttcaatgattctcagcgaaaagccaccatagatgctggtgttatt 17260543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 10494166 - 10494240
Alignment:
Q  12 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 86  Q
    |||||||||||||||||||| || ||||| ||||| |||||||||||  | ||||| |  |||||||||||||||    
T  10494166 aagaatgctgttgttactgtgccggcttacttcaacgattctcaacgaaaggctactattgatgctggtgctatt 10494240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 8382677 - 8382738
Alignment:
Q  21 gttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 82  Q
    |||||||| || ||||| ||||||||||||||||||||  |||| || ||||||||||||||    
T  8382677 gttgttaccgtgcctgcatatttcaatgattctcaacggaaagccacaaaagatgctggtgc 8382738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 6789885 - 6789842
Alignment:
Q  15 aatgctgttgttactgttcctgcttatttcaatgattctcaacg 58  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||    
T  6789885 aatgcagttattactgtgcctgcttatttcaatgattctcaacg 6789842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 3147648 - 3147574
Alignment:
Q  12 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 86  Q
    |||||||| |||||||| || |||||||||||||||||| |||| ||  |||| || | ||||||||||| ||||    
T  3147648 aagaatgcagttgttaccgtacctgcttatttcaatgatgctcagcggaaagcgacaatagatgctggtgttatt 3147574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 8585501 - 8585631
Alignment:
Q  15 aatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattatta 114  Q
    ||||| ||||| ||||| ||||||||||||||||||||||| ||  |||| || |  ||||||||||| ||| | ||  | |||||  ||||||| || |    
T  8585501 aatgcagttgtgactgtgcctgcttatttcaatgattctcagcgaaaagccaccatggatgctggtgccattgctggccttaatgttatgaggataatca 8585600  T
Q  115 atgagcctactgctgctgcaattgcttatgg 145  Q
    |||| || |||||||| || ||||| |||||    
T  8585601 atgaacccactgctgcagctattgcatatgg 8585631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 8636135 - 8636205
Alignment:
Q  12 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 82  Q
    |||||||| ||  ||||||| || |||||||||||||||||||| ||| || | || ||||||||||||||    
T  8636135 aagaatgcagtcattactgtgcccgcttatttcaatgattctcagcgtaaatccaccaaagatgctggtgc 8636205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 13333248 - 13333322
Alignment:
Q  12 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 86  Q
    |||||||| ||||||||||| || ||||| |||||||||||||| ||  | || || | ||||||||||||||||    
T  13333248 aagaatgccgttgttactgtgccggcttacttcaatgattctcagcgaaaggccaccatagatgctggtgctatt 13333322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 349
Target Start/End: Original strand, 7877773 - 7877862
Alignment:
Q  260 agctactgctggtgatactcatcttggtggtgaagattttgataacagaatggtgaatcattttgtttcggagtttaggaggaaaaataa 349  Q
    ||||||||| || |||||||| || ||||| || || ||||||||||||||| |||| ||||| ||   |||||||| |||||| |||||    
T  7877773 agctactgccggagatactcacctaggtggagaggactttgataacagaatgttgaaccatttagtgatggagtttaagaggaagaataa 7877862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 1301837 - 1301797
Alignment:
Q  15 aatgctgttgttactgttcctgcttatttcaatgattctca 55  Q
    ||||||||||||||||| |||||  ||||||||||||||||    
T  1301837 aatgctgttgttactgtgcctgcacatttcaatgattctca 1301797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 421
Target Start/End: Complemental strand, 8590729 - 8590605
Alignment:
Q  297 tttgataacagaatggtgaatcattttgtttcggagtttaggaggaaaaataagaaggatattagtggtaatgcaagagctttgaggagattaagaacag 396  Q
    |||||||||||||||||  | ||||| ||   ||||||||||||||| |||||   |||| | ||||| || ||||| ||| | ||||| || | |||||    
T  8590729 tttgataacagaatggttcaccatttggtgaaggagtttaggaggaagaataaagtggatttaagtgggaacgcaagggctcttaggaggttgaaaacag 8590630  T
Q  397 cttgtgagagagctaagagaacact 421  Q
    |||||||||| ||||| || |||||    
T  8590629 cttgtgagagggctaaaaggacact 8590605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 8610044 - 8609980
Alignment:
Q  261 gctactgctggtgatactcatcttggtggtgaagattttgataacagaatggtgaatcattttgt 325  Q
    ||||||||||| |||||||| ||||| || || || |||||| |||||||||| ||||| |||||    
T  8610044 gctactgctggagatactcaccttggaggagaggactttgatcacagaatggttaatcactttgt 8609980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 8628673 - 8628609
Alignment:
Q  247 tcttcgaagtgaaagctactgctggtgatactcatcttggtggtgaagattttgataacagaatg 311  Q
    |||| ||||| ||||| ||||||||  ||||||| |||||||| || || |||||||||||||||    
T  8628673 tctttgaagttaaagccactgctggaaatactcaccttggtggagaggactttgataacagaatg 8628609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 8659740 - 8659696
Alignment:
Q  11 gaagaatgctgttgttactgttcctgcttatttcaatgattctca 55  Q
    |||||||||||||||||| || ||||| || ||||||||||||||    
T  8659740 gaagaatgctgttgttacagtgcctgcatagttcaatgattctca 8659696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 17716485 - 17716621
Alignment:
Q  12 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 111  Q
    |||||||| ||||||||||| |||||||| || |||  ||||||  | |||||||| ||  |||||||||||||| | ||| | ||| |  |||| ||||    
T  17716485 aagaatgccgttgttactgtccctgcttactttaatttttctcagagacaagctactaagcatgctggtgctattgctggtcttaatttcatgagaatta 17716584  T
Q  112 ttaatgagcctactgctgctgcaattgcttatggttt 148  Q
    |||||||||| |||||||| || ||||||||||||||    
T  17716585 ttaatgagcccactgctgcagccattgcttatggttt 17716621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 223
Target Start/End: Original strand, 5445621 - 5445754
Alignment:
Q  90 ggtttgaatgtgttgaggattattaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgctta 189  Q
    ||||| |||||| ||||||| || || ||||||||||| ||||| ||||||||||||||||| ||||||   | |||| |||| ||  |||| ||||||     
T  5445621 ggttttaatgtgatgaggatcatcaacgagcctactgcagctgctattgcttatggtttggacaagaaaatgtggagagaaggtgagaagaatgtgcttg 5445720  T
Q  190 tttttgacttgggaggtggaactttcgatgtttc 223  Q
    | |||||  | || |||||||| |||||||||||    
T  5445721 tgtttgatcttggtggtggaacattcgatgtttc 5445754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 81
Target Start/End: Complemental strand, 12235065 - 12234996
Alignment:
Q  12 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtg 81  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||  |||| || | |||||||||||    
T  12235065 aagaatgcagttgttaccgtgcctgcttatttcaatgattctcaacgaaaagcaactatagatgctggtg 12234996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 426
Target Start/End: Original strand, 12258715 - 12258787
Alignment:
Q  354 gatattagtggtaatgcaagagctttgaggagattaagaacagcttgtgagagagctaagagaacactttctt 426  Q
    ||||| ||||| ||| ||||||||||||||||||| | ||||||||||||||| || || ||| |||||||||    
T  12258715 gatataagtggaaatccaagagctttgaggagattgaaaacagcttgtgagagtgcaaaaagatcactttctt 12258787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 79
Target Start/End: Original strand, 12245198 - 12245265
Alignment:
Q  12 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctgg 79  Q
    |||||||||||||||||||| ||||||||||| | ||||||||| ||  |||| |||| |||||||||    
T  12245198 aagaatgctgttgttactgtacctgcttattttagtgattctcagcgaaaagcaacgatagatgctgg 12245265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 364
Target Start/End: Original strand, 17705797 - 17705882
Alignment:
Q  279 catcttggtggtgaagattttgataacagaatggtgaatcattttgtttcggagtttaggaggaaaaataagaaggatattagtgg 364  Q
    |||||||| ||||| |||||| |||||||||||||||| || |||||||  ||||| | ||| || || |||||||| ||||||||    
T  17705797 catcttggaggtgaggattttaataacagaatggtgaaccactttgtttaagagttcaagagaaagaagaagaaggacattagtgg 17705882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 279 - 416
Target Start/End: Original strand, 17716746 - 17716883
Alignment:
Q  279 catcttggtggtgaagattttgataacagaatggtgaatcattttgtttcggagtttaggaggaaaaataagaaggatattagtggtaatgcaagagctt 378  Q
    |||||||| ||||| |||||| |||||||||||||||| || ||||||   ||||| | ||| || || |||||||| |||||||| ||  ||||||||     
T  17716746 catcttggaggtgaggattttaataacagaatggtgaaccactttgttcgagagttcaagagaaagaacaagaaggacattagtggcaacccaagagctc 17716845  T
Q  379 tgaggagattaagaacagcttgtgagagagctaagaga 416  Q
    | | ||| || || || ||||||||||| || ||||||    
T  17716846 ttatgaggttgaggactgcttgtgagagggcgaagaga 17716883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 7542600 - 7542556
Alignment:
Q  14 gaatgctgttgttactgttcctgcttatttcaatgattctcaacg 58  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7542600 gaatgcagttgttactgtacctgcttattttaatgattctcaacg 7542556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 326
Target Start/End: Original strand, 17648100 - 17648147
Alignment:
Q  279 catcttggtggtgaagattttgataacagaatggtgaatcattttgtt 326  Q
    |||||||| ||||| |||||| ||||||||||||||||||| ||||||    
T  17648100 catcttggaggtgaggattttaataacagaatggtgaatcactttgtt 17648147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 326
Target Start/End: Original strand, 17666742 - 17666789
Alignment:
Q  279 catcttggtggtgaagattttgataacagaatggtgaatcattttgtt 326  Q
    |||||||| ||||| |||||| ||||||||||||||||||| ||||||    
T  17666742 catcttggaggtgaggattttaataacagaatggtgaatcactttgtt 17666789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 16657309 - 16657379
Alignment:
Q  12 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 82  Q
    |||||||||||||||||||| || ||||| ||||||||||| || ||  |||| || | ||||||||||||    
T  16657309 aagaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgc 16657379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 377
Target Start/End: Original strand, 17718010 - 17718108
Alignment:
Q  279 catcttggtggtgaagattttgataacagaatggtgaatcattttgtttcggagtttaggaggaaaaataagaaggatattagtggtaatgcaagagct 377  Q
    |||||||| ||||| |||||| |||||||||||||||| || ||||||   ||||| | ||| || || |||||||| |||||||| ||  ||||||||    
T  17718010 catcttggaggtgaggattttaataacagaatggtgaaccactttgttcaagagttcaagagaaagaacaagaaggacattagtggcaacccaagagct 17718108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 4678349 - 4678420
Alignment:
Q  11 gaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 82  Q
    ||||||||  ||||||||||| ||||| || |||||||||||||||||  ||||||| | ||||||||||||    
T  4678349 gaagaatgtcgttgttactgtgcctgcatacttcaatgattctcaacgaaaagctaccatagatgctggtgc 4678420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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