View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3575_high_4 (Length: 388)

Name: NF3575_high_4
Description: NF3575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3575_high_4
NF3575_high_4
[»] chr3 (5 HSPs)
chr3 (25-374)||(3452559-3452908)
chr3 (33-284)||(16004275-16004526)
chr3 (243-354)||(49287-49398)
chr3 (237-369)||(21394311-21394443)
chr3 (312-370)||(16004219-16004277)
[»] chr2 (6 HSPs)
chr2 (25-374)||(10725075-10725424)
chr2 (206-373)||(9493181-9493348)
chr2 (240-373)||(27000697-27000830)
chr2 (240-370)||(9145044-9145172)
chr2 (157-303)||(26160111-26160257)
chr2 (240-333)||(21498919-21499012)
[»] chr4 (3 HSPs)
chr4 (25-262)||(55416443-55416680)
chr4 (218-369)||(26697524-26697675)
chr4 (33-228)||(48988518-48988711)
[»] chr8 (3 HSPs)
chr8 (33-368)||(13318341-13318666)
chr8 (201-370)||(13334075-13334244)
chr8 (27-301)||(20137980-20138254)
[»] chr7 (7 HSPs)
chr7 (165-373)||(6561593-6561801)
chr7 (105-333)||(23690894-23691122)
chr7 (238-322)||(21777093-21777177)
chr7 (240-369)||(28506524-28506652)
chr7 (238-304)||(21636771-21636837)
chr7 (27-301)||(44353817-44354091)
chr7 (78-126)||(21776933-21776981)
[»] chr6 (2 HSPs)
chr6 (240-373)||(34702739-34702871)
chr6 (286-372)||(12250008-12250094)
[»] chr5 (2 HSPs)
chr5 (240-373)||(35562774-35562907)
chr5 (238-318)||(14922250-14922330)
[»] scaffold0217 (1 HSPs)
scaffold0217 (239-299)||(23089-23149)


Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 25 - 374
Target Start/End: Original strand, 3452559 - 3452908
Alignment:
Q  25 agaaaaggtgatcaatattctcttcaaacccacaaccacctgaacaaaaagatgtatttggttgcagaacccttctcctaattaagttgtttgttgttgg 124  Q
    ||||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3452559 agaaaagatgatcaatattatcttcaaactcacaaccacccgaacaaaaagatgtatttggttgcacaacccttctcctaattaagttgtttgttgttgg 3452658  T
Q  125 aagttggttacgcaataaatgttaggcaaaattgttgacatttagaggaacctccttgtgcgaaataactgaagcatgatcattgtcgaaagtttgatct 224  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3452659 aagttggttacgcaataaatgttaggcgaaattgttgacatttagaggaacctccttgtgcgaaataactgaagcatgatcattgtcgaaagtttgatct 3452758  T
Q  225 cttgatattaggaagttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcattcacgttatcctgcaaaacaattg 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3452759 cttgatattaggaagttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcattcacgttatcctgcaaaacaattg 3452858  T
Q  325 gtagtaaaatcgcgctacattcactccccaattcttcctcccaagccaat 374  Q
    ||||||||||| |||||||||||||| |||||||||||||||||| ||||    
T  3452859 gtagtaaaatcacgctacattcactctccaattcttcctcccaagtcaat 3452908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 33 - 284
Target Start/End: Complemental strand, 16004526 - 16004275
Alignment:
Q  33 tgatcaatattctcttcaaacccacaaccacctgaacaaaaagatgtatttggttgcagaacccttctcctaattaagttgtttgttgttggaagttggt 132  Q
    |||||||| ||||||||||| ||||| || | |||||||| |||||||||  ||||||| ||| ||||||||||||||| || ||||||||||||| |||    
T  16004526 tgatcaatgttctcttcaaaaccacagccgcatgaacaaagagatgtattcagttgcagtacctttctcctaattaagtcgtctgttgttggaagtcggt 16004427  T
Q  133 tacgcaataaatgttaggcaaaattgttgacatttagaggaacctccttgtgcgaaataactgaagcatgatcattgtcgaaagtttgatctcttgatat 232  Q
    || ||||||||    | ||||||  |  ||  |||||||||| |||||||||  |||| | ||||||||||||||| | ||||||||||| ||||||| |    
T  16004426 tatgcaataaacaccatgcaaaaaagaggatttttagaggaatctccttgtgtcaaatgattgaagcatgatcattattgaaagtttgatatcttgatgt 16004327  T
Q  233 taggaagttgtaaacactagcaacattgtattttaaagaggcatgaagttgc 284  Q
    |   ||||||||||||||||||||||||||| ||  ||||||||| ||||||    
T  16004326 tgtaaagttgtaaacactagcaacattgtatcttggagaggcatgcagttgc 16004275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 243 - 354
Target Start/End: Complemental strand, 49398 - 49287
Alignment:
Q  243 taaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcattcacgttatcctgcaaaacaattggtagtaaaatcgcgctac 342  Q
    |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| || ||||| ||||||||||||| |||||||| ||| | ||    
T  49398 taaacactagcaacattgtattttgaagaggcatgaaattgccaagtccacatgtcattaacattatcttgcaaaacaattgttagtaaaagcgcacaac 49299  T
Q  343 attcactcccca 354  Q
    ||||||||||||    
T  49298 attcactcccca 49287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 237 - 369
Target Start/End: Original strand, 21394311 - 21394443
Alignment:
Q  237 aagttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcattcacgttatcctgcaaaacaattggtagtaaaatcg 336  Q
    ||||||||| |||||| |||| |||||||| | |||||||||||||| ||||||||| |||||||||| | | | ||||||||||| |||| ||||| ||    
T  21394311 aagttgtaagcactagtaacaatgtattttgatgaggcatgaagttgtcaaatccacctgtcattcacatcagcatgcaaaacaataggtaataaaaacg 21394410  T
Q  337 cgctacattcactccccaattcttcctcccaag 369  Q
      | ||| |||| | ||||||||||||||||||    
T  21394411 aacaacactcacactccaattcttcctcccaag 21394443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 312 - 370
Target Start/End: Complemental strand, 16004277 - 16004219
Alignment:
Q  312 tgcaaaacaattggtagtaaaatcgcgctacattcactccccaattcttcctcccaagc 370  Q
    |||||||||||||||| ||||| ||| | ||||||||| ||||||||||||||||||||    
T  16004277 tgcaaaacaattggtaataaaaacgcacaacattcacttcccaattcttcctcccaagc 16004219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 25 - 374
Target Start/End: Original strand, 10725075 - 10725424
Alignment:
Q  25 agaaaaggtgatcaatattctcttcaaacccacaaccacctgaacaaaaagatgtatttggttgcagaacccttctcctaattaagttgtttgttgttgg 124  Q
    |||||| |||||||||||||||||||||||||||||| ||| |||||| |||| |||| ||||||| ||||||||| || |||||||||| |||||||||    
T  10725075 agaaaatgtgatcaatattctcttcaaacccacaacctcctaaacaaagagatatattcggttgcaaaacccttcttctgattaagttgtatgttgttgg 10725174  T
Q  125 aagttggttacgcaataaatgttaggcaaaattgttgacatttagaggaacctccttgtgcgaaataactgaagcatgatcattgtcgaaagtttgatct 224  Q
    |||| | |||||||||||| |  | || ||| ||||||| ||||||||||||||||| ||| |||||| ||||  ||||| ||||| |||||||||||||    
T  10725175 aagtcgattacgcaataaacggcaagcgaaaatgttgacttttagaggaacctccttatgccaaataattgaaatatgataattgttgaaagtttgatct 10725274  T
Q  225 cttgatattaggaagttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcattcacgttatcctgcaaaacaattg 324  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  10725275 cttgatgttaggaagttgtaaacactagcaacattgtattttaaagagacatgaagttgccaagtccacttgtcattcacattatcctgcaaaacaattg 10725374  T
Q  325 gtagtaaaatcgcgctacattcactccccaattcttcctcccaagccaat 374  Q
     |||||||| ||| | ||||||||||| |||||||| |||| ||||||||    
T  10725375 ttagtaaaagcgcacaacattcactcctcaattctttctcctaagccaat 10725424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 206 - 373
Target Start/End: Complemental strand, 9493348 - 9493181
Alignment:
Q  206 attgtcgaaagtttgatctcttgatattaggaagttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcattcacg 305  Q
    ||||| |||||||||||| |||||| ||| | |||||||  ||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||||     
T  9493348 attgttgaaagtttgatcccttgatgttaagtagttgtaggcactagcaacattgtatcttaaagaggcatgaagttgccaagttcacttgtcattcaca 9493249  T
Q  306 ttatcctgcaaaacaattggtagtaaaatcgcgctacattcactccccaattcttcctcccaagccaa 373  Q
    ||| | |||||||||||||||||||| |  || | ||||||||||| | |||||||||||||||||||    
T  9493248 ttagcgtgcaaaacaattggtagtaagagtgcacaacattcactccacgattcttcctcccaagccaa 9493181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 240 - 373
Target Start/End: Complemental strand, 27000830 - 27000697
Alignment:
Q  240 ttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcattcacgttatcctgcaaaacaattggtagtaaaatcgcgc 339  Q
    ||||||||||||| ||||||||||||| |||||||||||||||| ||||||||  | |||||||  | | | ||||||||||| |||| ||||| | | |    
T  27000830 ttgtaaacactagtaacattgtattttgaagaggcatgaagttgtcaaatccatctttcattcatatcagcgtgcaaaacaatcggtaataaaagctcac 27000731  T
Q  340 tacattcactccccaattcttcctcccaagccaa 373  Q
     |||||| ||||||||||||||||||||||||||    
T  27000730 aacattccctccccaattcttcctcccaagccaa 27000697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 240 - 370
Target Start/End: Complemental strand, 9145172 - 9145044
Alignment:
Q  240 ttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcattcacgttatcctgcaaaacaattggtagtaaaatcgcgc 339  Q
    ||||||||| |||||||||||||| ||| |||||| |||||||| ||| ||||| |  || |||| | | |||||||||||||||||||||||| ||| |    
T  9145172 ttgtaaacaatagcaacattgtatcttagagaggcgtgaagttgtcaagtccacct--cactcacatcagcctgcaaaacaattggtagtaaaagcgcac 9145075  T
Q  340 tacattcactccccaattcttcctcccaagc 370  Q
     ||| |||||| |||||||||||||||||||    
T  9145074 aacaatcactctccaattcttcctcccaagc 9145044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 303
Target Start/End: Original strand, 26160111 - 26160257
Alignment:
Q  157 tgttgacatttagaggaacctccttgtgcgaaataactgaagcatgatcattgtcgaaagtttgatctcttgatattaggaagttgtaaacactagcaac 256  Q
    ||||||| ||||||||||||||||||||| ||||||  | |  |||||||||||   ||| ||| || ||| || | |  || ||||  || |||| |||    
T  26160111 tgttgacttttagaggaacctccttgtgccaaataagagtattatgatcattgtttgaaggttggtccctttatgtcaaaaaattgtcgacgctagtaac 26160210  T
Q  257 attgtattttaaagaggcatgaagttgccaaatccacatgtcattca 303  Q
     ||||||||| |||||||||||||||| ||||||||| |||||||||    
T  26160211 gttgtattttgaagaggcatgaagttgtcaaatccacttgtcattca 26160257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 333
Target Start/End: Original strand, 21498919 - 21499012
Alignment:
Q  240 ttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcattcacgttatcctgcaaaacaattggtagtaaaa 333  Q
    |||||| |||||| ||||||||||||| ||||  ||| ||| | | |||||||| |||||||||| | | | ||||||| ||| ||||||||||    
T  21498919 ttgtaagcactagtaacattgtattttgaagatacattaagattctaaatccacttgtcattcacatcagcatgcaaaataataggtagtaaaa 21499012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 25 - 262
Target Start/End: Complemental strand, 55416680 - 55416443
Alignment:
Q  25 agaaaaggtgatcaatattctcttcaaacccacaaccacctgaacaaaaagatgtatttggttgcagaacc--cttctcctaattaagttgtttgttgtt 122  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||| ||||| ||||||  || | ||| |||||||| | |||||||    
T  55416680 agaaaaggtgatcaatattctcttcaaactcacaaccgcctgaacaaagagatgtattcggttggagaaccttctccacctgattaagttatatgttgtt 55416581  T
Q  123 ggaagttggttacgcaataaatgttaggcaaaattgttgacatttagaggaacctccttgtgcgaaataactgaagcatgatcattgtcgaaagtttgat 222  Q
    |||||| ||||||||||||||   |  |||||| ||||||| ||||||||||||||||||||| |||||| | ||| |||||||||||   ||| |||||    
T  55416580 ggaagtcggttacgcaataaacacttagcaaaaatgttgacttttagaggaacctccttgtgccaaataattaaagtatgatcattgt--taaggttgat 55416483  T
Q  223 ctcttgatattaggaagttgtaaacactagcaacattgta 262  Q
    ||||| || |||||||||| ||||||||||||||| ||||    
T  55416482 ctcttaatcttaggaagttctaaacactagcaacaatgta 55416443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 369
Target Start/End: Complemental strand, 26697675 - 26697524
Alignment:
Q  218 ttgatctcttgatattaggaagttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcattcacgttatcctgcaaa 317  Q
    |||||| |||||| | | ||||||||||||||||| | |||| |||||| |||||||||||||||||||||||||  |||||||||        ||||||    
T  26697675 ttgatcccttgatgtcaagaagttgtaaacactagtagcattatattttgaagaggcatgaagttgccaaatccatctgtcattcatacctgaatgcaaa 26697576  T
Q  318 acaattggtagtaaaatcgcgctacattcactccccaattcttcctcccaag 369  Q
    |||||||||| || ||  || | |||||| |||||||||| |||||||||||    
T  26697575 acaattggtaatagaagagcacaacattccctccccaattattcctcccaag 26697524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 228
Target Start/End: Complemental strand, 48988711 - 48988518
Alignment:
Q  33 tgatcaatattctcttcaaacccacaaccacctgaacaaaaagatgtatttggttgcagaacccttctcctaattaagttgtttgttgttggaagttggt 132  Q
    ||||||||||||||||| |||| |||||| ||| |||| | |||||| |  ||||| |||| ||||||||  ||||||||||     |||||||||||||    
T  48988711 tgatcaatattctcttccaacctacaaccgcctaaacatagagatgtgtccggttgaagaatccttctcc-gattaagttgtcgcaagttggaagttggt 48988613  T
Q  133 tacgcaataaatgttaggcaaaattgttgacatttagaggaacctccttgtgcgaaataactgaagcatgatcattgtcgaaagtttgatctcttg 228  Q
    ||| |||||   || |||||||| ||||||| || ||| |||| ||||||| | |||||  ||||  | || |||||| ||| |||||||| ||||    
T  48988612 tacacaataggcgtaaggcaaaaatgttgactttcaga-gaacttccttgtaccaaatagttgaaaaaagaacattgttgaatgtttgatcccttg 48988518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 33 - 368
Target Start/End: Original strand, 13318341 - 13318666
Alignment:
Q  33 tgatcaatattctcttcaaacccacaaccacctgaacaaaaagatgtatttggttgcagaacccttctcctaattaagttgtttgttgttggaagttggt 132  Q
    |||||||| |||||||||||||||||||  ||| ||||   |||| |||| |||||||| |||||||  ||||||||||||||| ||| ||||||| |||    
T  13318341 tgatcaatgttctcttcaaacccacaactgcctaaacagggagatctattcggttgcagtacccttcagctaattaagttgtttattgctggaagtcggt 13318440  T
Q  133 tacgcaataaatgttaggcaaaattgttgacatttagaggaacctccttgtgcgaaataactgaagcatgatcattgtcgaaagtttgatctcttgatat 232  Q
    ||| ||||||| | ||||| ||| ||||||| ||||||||||||||||||||| |||| | ||          ||| | |||| |||| ||| ||||| |    
T  13318441 tacacaataaacgctaggcgaaaatgttgacttttagaggaacctccttgtgccaaatgattg----------attattgaaaatttgttcttttgatgt 13318530  T
Q  233 taggaagttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcattcacgttatcctgcaaaacaattggtagtaaa 332  Q
    ||| |||||||||||||||||||| |||||| || ||| | ||| |||||||||| | ||| ||||| |||| | ||||| ||||| |||||||| ||||    
T  13318531 tagaaagttgtaaacactagcaacgttgtatcttgaagtgacattaagttgccaagttcacgtgtcagtcacatcatcctacaaaataattggtaataaa 13318630  T
Q  333 atcgcgctacattcactccccaattcttcctcccaa 368  Q
    |  || | |||| ||||| |||||||||||||||||    
T  13318631 agtgcacaacatccactctccaattcttcctcccaa 13318666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 201 - 370
Target Start/End: Complemental strand, 13334244 - 13334075
Alignment:
Q  201 tgatcattgtcgaaagtttgatctcttgatattaggaagttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcat 300  Q
    ||||||||||  |||| |||||| |||||| |||  ||||||||| |||||| ||||||||| ||||||| ||||||||||||||||||| || || |||    
T  13334244 tgatcattgtttaaaggttgatcccttgatgttaaaaagttgtaagcactagtaacattgtactttaaagtggcatgaagttgccaaatcaacctgccat 13334145  T
Q  301 tcacgttatcctgcaaaacaattggtagtaaaatcgcgctacattcactccccaattcttcctcccaagc 370  Q
    ||     | ||||||||||||||||||||||||  |  | |||||| |||||||||| ||| ||||||||    
T  13334144 tcgtacaagcctgcaaaacaattggtagtaaaagagtacaacattccctccccaattattcttcccaagc 13334075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 301
Target Start/End: Complemental strand, 20138254 - 20137980
Alignment:
Q  27 aaaaggtgatcaatattctcttcaaacccacaaccacctgaacaaaaagatgtatttggttgcagaacccttctcctaattaagttgtttgttgttggaa 126  Q
    ||||| ||||||||||| ||||| |||| |||||   ||||||||| |||||| || || || || | |||| |||||||||||||       |||||||    
T  20138254 aaaagatgatcaatattttcttccaacctacaactgactgaacaaagagatgtgttcggatgaagtatccttttcctaattaagttaccacaagttggaa 20138155  T
Q  127 gttggttacgcaataaatgttaggcaaaattgttgacatttagaggaacctccttgtgcgaaataactgaagcatgatcattgtcgaaagtttgatctct 226  Q
    || | |||||||||||| || || | ||| ||||||  |||| || || |||||||| | ||||   || |  | |||| |||| | |||||||||| ||    
T  20138154 gtcgattacgcaataaacgtcagacgaaaatgttgatttttaaagaaatctccttgttccaaatggttggaaaaagatctttgttggaagtttgatccct 20138055  T
Q  227 tgatattaggaagttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcatt 301  Q
    |||| ||||| |||||||  ||||||||||||||||| || || |||||| ||||| |||| || || |||||||    
T  20138054 tgatgttaggtagttgtaggcactagcaacattgtatcttgaaaaggcataaagttaccaagtctacttgtcatt 20137980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 165 - 373
Target Start/End: Original strand, 6561593 - 6561801
Alignment:
Q  165 tttagaggaacctccttgtgcgaaataactgaagcatgatcattgtcgaaagtttgatctcttgatattaggaagttgtaaacactagcaacattgtatt 264  Q
    ||||||||||||||||||||| ||||||  | |  |||||||||||   ||| ||| || |||||| | |  |||||||| || |||| ||| |||||||    
T  6561593 tttagaggaacctccttgtgccaaataagagtattatgatcattgtttgaaggttggtcccttgatgtcaaaaagttgtagacgctagtaacgttgtatt 6561692  T
Q  265 ttaaagaggcatgaagttgccaaatccacatgtcattcacgttatcctgcaaaacaattggtagtaaaatcgcgctacattcactccccaattcttcctc 364  Q
    || |||||| ||||||||||||||||||| |||||||||  | ||| |||||||||||||||| ||||||  | | | |||| ||||||| |||||||||    
T  6561693 ttgaagaggtatgaagttgccaaatccacctgtcattcatatcatcatgcaaaacaattggtaataaaataacacaatattctctccccatttcttcctc 6561792  T
Q  365 ccaagccaa 373  Q
    |||||||||    
T  6561793 ccaagccaa 6561801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 105 - 333
Target Start/End: Original strand, 23690894 - 23691122
Alignment:
Q  105 attaagttgtttgttgttggaagttggttacgcaataaatgttaggcaaaattgttgacatttagaggaacctccttgtgcgaaataactgaagcatgat 204  Q
    ||||||||||  ||||||||||| || ||||| ||||||||  | |||||| ||||||| |||| |||||||| ||||||| ||||||  | |   ||||    
T  23690894 attaagttgtcagttgttggaagatgtttacgtaataaatgccaagcaaaaatgttgacttttaaaggaaccttcttgtgccaaataatagtattgtgat 23690993  T
Q  205 cattgtcgaaagtttgatctcttgatattaggaagttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcattcac 304  Q
    ||||||  |||| |||||| |||||| | |  || || ||| |||||| ||||||||| ||| ||||||||||||| |||||||||||| ||||||||||    
T  23690994 cattgtttaaagattgatcccttgatgtcaaaaaattttaagcactagtaacattgtactttgaagaggcatgaagctgccaaatccacctgtcattcac 23691093  T
Q  305 gttatcctgcaaaacaattggtagtaaaa 333  Q
     |    ||||||||||| |||||||||||    
T  23691094 atcggtctgcaaaacaactggtagtaaaa 23691122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 238 - 322
Target Start/End: Original strand, 21777093 - 21777177
Alignment:
Q  238 agttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcattcacgttatcctgcaaaacaat 322  Q
    ||||||||||||||| || ||||||| || |||||||||||||||| |||||||||||||||||||| | | | |||||||||||    
T  21777093 agttgtaaacactagtaatattgtatcttgaagaggcatgaagttgtcaaatccacatgtcattcacatcagcatgcaaaacaat 21777177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 369
Target Start/End: Original strand, 28506524 - 28506652
Alignment:
Q  240 ttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcattcacgttatcctgcaaaacaattggtagtaaaatcgcgc 339  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||  ||| ||||| || ||||||| ||| |||||||||||| |||| | | || |||      
T  28506524 ttgtaaacactagtaacattgtattttgaagagacatgaagttttcaagtccacctgacattcacattagcctgcaaaacaa-tggttgaagaagcgcaa 28506622  T
Q  340 tacattcactccccaattcttcctcccaag 369  Q
     ||| |||||| ||||||||||||||||||    
T  28506623 aacactcactcaccaattcttcctcccaag 28506652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 21636771 - 21636837
Alignment:
Q  238 agttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcattcac 304  Q
    ||||||||||||||| |||||||||| || |||||||||||| ||||||||||||||| | ||||||    
T  21636771 agttgtaaacactagtaacattgtatcttgaagaggcatgaaattgccaaatccacatattattcac 21636837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 301
Target Start/End: Original strand, 44353817 - 44354091
Alignment:
Q  27 aaaaggtgatcaatattctcttcaaacccacaaccacctgaacaaaaagatgtatttggttgcagaacccttctcctaattaagttgtttgttgttggaa 126  Q
    ||||| ||||||||||| ||||| |||| |||||   ||||||||| |||||| || || || || | |||| |||||||||||||       |||||||    
T  44353817 aaaagatgatcaatattttcttccaacctacaactgactgaacaaagagatgtgttcggatgaagtatccttttcctaattaagttaccacaagttggaa 44353916  T
Q  127 gttggttacgcaataaatgttaggcaaaattgttgacatttagaggaacctccttgtgcgaaataactgaagcatgatcattgtcgaaagtttgatctct 226  Q
    || | |||||||||||| || || | ||| ||||||  |||| || || |||||||| | ||||   || |  | |||| |||| | |||||||||| ||    
T  44353917 gtcgattacgcaataaacgtcagacgaaaatgttgatttttaaagaaatctccttgttccaaatggttggaaaaagatctttgttggaagtttgatccct 44354016  T
Q  227 tgatattaggaagttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcatt 301  Q
    |||| ||||| |||||||  ||||||||||||||||| || || |||||| ||||| |||| || || |||||||    
T  44354017 tgatgttaggtagttgtaggcactagcaacattgtatcttgaaaaggcataaagttaccaagtctacttgtcatt 44354091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 21776933 - 21776981
Alignment:
Q  78 gtatttggttgcagaacccttctcctaattaagttgtttgttgttggaa 126  Q
    ||||||||||| || ||| ||||||||||||| || |||||||||||||    
T  21776933 gtatttggttgaagcacctttctcctaattaaattatttgttgttggaa 21776981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 373
Target Start/End: Complemental strand, 34702871 - 34702739
Alignment:
Q  240 ttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcattcacgttatcctgcaaaacaattggtagtaaaatcgcgc 339  Q
    ||||||||||||| ||||  ||||||| |||||||||||||||| ||||||||| | |||||||  | | | |||||||||||||||| ||||| | | |    
T  34702871 ttgtaaacactagtaacaa-gtattttgaagaggcatgaagttgtcaaatccacctttcattcatatcagcgtgcaaaacaattggtaataaaagctcac 34702773  T
Q  340 tacattcactccccaattcttcctcccaagccaa 373  Q
     |||||| ||||||||||||||||||||||||||    
T  34702772 aacattccctccccaattcttcctcccaagccaa 34702739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 372
Target Start/End: Complemental strand, 12250094 - 12250008
Alignment:
Q  286 aaatccacatgtcattcacgttatcctgcaaaacaattggtagtaaaatcgcgctacattcactccccaattcttcctcccaagcca 372  Q
    ||||||| ||||||||||  | | |||||||||||||||||| ||||||  | | |||||| ||||||| ||||||| |||||||||    
T  12250094 aaatccaaatgtcattcatatcagcctgcaaaacaattggtaataaaataacacaacattccctccccagttcttccacccaagcca 12250008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 240 - 373
Target Start/End: Original strand, 35562774 - 35562907
Alignment:
Q  240 ttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcattcacgttatcctgcaaaacaattggtagtaaaatcgcgc 339  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||||| | | | ||||||||||  | || || || ||| |    
T  35562774 ttgtaaacactagtaacattgtattttgaagaggcatgaagttgccaaatcctcttgtcattcacatcaacatgcaaaacaaaagataatataaacgcac 35562873  T
Q  340 tacattcactccccaattcttcctcccaagccaa 373  Q
     |||||||||   ||||||||| |||||||||||    
T  35562874 aacattcacttttcaattcttcttcccaagccaa 35562907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 238 - 318
Target Start/End: Original strand, 14922250 - 14922330
Alignment:
Q  238 agttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtcattcacgttatcctgcaaaa 318  Q
    ||||||||||||||| || |||||||||| ||||  |||| ||||||||||| ||||||||| |||| ||  |||||||||    
T  14922250 agttgtaaacactagtaaaattgtattttgaagatacatggagttgccaaattcacatgtcactcacatttgcctgcaaaa 14922330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 23089 - 23149
Alignment:
Q  239 gttgtaaacactagcaacattgtattttaaagaggcatgaagttgccaaatccacatgtca 299  Q
    |||||||||||||  ||| |||||||||||||||||||| |||||||||||||||||||||    
T  23089 gttgtaaacactaaaaacgttgtattttaaagaggcatgcagttgccaaatccacatgtca 23149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University