View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3575_high_6 (Length: 367)
Name: NF3575_high_6
Description: NF3575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3575_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 7 - 354
Target Start/End: Original strand, 5834831 - 5835159
Alignment:
| Q |
7 |
tgcaaaaatattggaatttcttgacaaagaactagcatctttataagtcaattttggggggaattagattatggaggtggaaaattgaagaatatttccc |
106 |
Q |
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| T |
5834831 |
tgcacaaataatggaatttcttgacaaagaactagcatctttataagtcaattttggggggaattagattatggaggtggaaaattgaagaatatttccc |
5834930 |
T |
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| Q |
107 |
ttacagataaatattttcactagataattattttcactacttgagctagcaaacatacgagattctaaatggaaagccttcaacactgcttgtacttgtt |
206 |
Q |
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| T |
5834931 |
ttacagataaatatt-----------------ttcactacttgagctagcaaacatacgagattctaaatggaaagccttcaacactgcttgtacttgtt |
5835013 |
T |
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| Q |
207 |
attctgtactagtaaatggcttctaggaatattcttgaaaattgatacttggaaaattaaatagnnnnnnnnnnnnnnnntcttatgtatattggagaaa |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5835014 |
attctgtactagtaaatggcttctaggaatattcttgaaaattgatacttggaaaattaaatag--aaaaagaaaaaaaatcttatgtatattggagaaa |
5835111 |
T |
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| Q |
307 |
aacaaacttagaaccgtctcatagcaagaaagcatgatacttggtcct |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5835112 |
aacaaacttagaaccgtctcatagcaagaaagcatgatacttggtcct |
5835159 |
T |
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