View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3575_high_9 (Length: 281)
Name: NF3575_high_9
Description: NF3575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3575_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 5948222 - 5948364
Alignment:
| Q |
1 |
tcatcattggtgtttgacccttcgaattcggtttatttcacctatttattcccgtattgtcaaaagacatgcatttagtgtaactttataaatcaatctt |
100 |
Q |
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| T |
5948222 |
tcatcattggtgtttgacccttcgaattcggtttatttcaccaatttattcccgtattgtcaaaagacatgcatttagtgtaactttataaatcaatctt |
5948321 |
T |
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| Q |
101 |
tcctccacctggacgaattactaattagaacttgaagaataaatga |
146 |
Q |
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| T |
5948322 |
tcctccacctggacgagttac---ttagaacttgaagaataaatga |
5948364 |
T |
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