View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3575_low_1 (Length: 697)
Name: NF3575_low_1
Description: NF3575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3575_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Original strand, 22756365 - 22756863
Alignment:
| Q |
1 |
ttgtgacacaacactaagaataaaatattgaaaaacaaaagaaggaagaagacatagtcttttgtattataaaatggacacaaaccaaagaagctgttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22756365 |
ttgtgacacaacactaagaataaaatattgtaaaacaaaagaaggaagaagacatagtcttttgtattataaaatggacacaaaccaaagaagctgttat |
22756464 |
T |
|
| Q |
101 |
gtattgtgattcacagattccaacaaacgccgtttccttacaaaagagagagagtgtgtttctgtctgaaaggttctgtaacgtttgcagcagctttcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22756465 |
gtattgtgattcacagattccaacaaacgccgtttccttacaaaagagagagagtgtgtttctgtctgaaaggttctgtaacgtttgcagcagctttcat |
22756564 |
T |
|
| Q |
201 |
aacagacatgatttcaaaagctgtttatattgtctctcataaagcttaatcattcatctttcaattgtgaagccagtacnnnnnnnnnnnnnnnnnntta |
300 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| |
|
|
| T |
22756565 |
aacagacatgatttcaaaagcagcttatattgtctctcataaagcttaatcattcatcattcaattgtgaaaccagtac------atgatgatgatgtta |
22756658 |
T |
|
| Q |
301 |
agtactatatagtaatagtaatgatgagttatatttgatcaaagtggtgaaaaagtgaaaaggtttttgacttgcaatgatgatgaataatggtgaagaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22756659 |
agtactatatagtaatagtaatgatgagttatatttgatcaaagtggtgaaaaagtgaaaaggtttttgacttgcaatgatgatgaataatggtgaagaa |
22756758 |
T |
|
| Q |
401 |
gatgaactctatgaacagttatggaaggcttgtgctggtcctcatgttgaagttcctcgtgctggacaaagagttttctattttcctcaaggacacatgg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22756759 |
gatgaactctatgaacagttatggaaggcttgtgctggtcctcatgttgaagttcctcgtgctggacaaagagttttctattttcctcaaggacacatgg |
22756858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 564 - 679
Target Start/End: Original strand, 22756928 - 22757041
Alignment:
| Q |
564 |
ttaagatgcttggaatttggatatatgcttgattct-attttttgttttggttaaggaatttgnnnnnnnnnngttcttactttataagtttttgtggat |
662 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22756928 |
ttaagatgctgggaatttggatatatgcttgattctaattttttgttttggttaaggaatttg---tttttttgttcttactttataagtttttgtggat |
22757024 |
T |
|
| Q |
663 |
atgtagttagaagtatc |
679 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
22757025 |
gtgtagttagaagtatc |
22757041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 446 - 505
Target Start/End: Complemental strand, 7077642 - 7077583
Alignment:
| Q |
446 |
gttgaagttcctcgtgctggacaaagagttttctattttcctcaaggacacatggaacaa |
505 |
Q |
| |
|
||||| |||||| ||| ||| ||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
7077642 |
gttgatgttccttgtgttggtcaaagtgttttctatttcccacaaggacacatggaacaa |
7077583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University