View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3575_low_12 (Length: 276)
Name: NF3575_low_12
Description: NF3575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3575_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 6504703 - 6504882
Alignment:
| Q |
11 |
atgaacacttgcggtggtaatgatgatatatacacaatgagacaagtgttggaagataaaatattatagaaattggaatttgttgaccttttaaactcac |
110 |
Q |
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| T |
6504703 |
atgaacacttgcgatggtaatgatgatatatacacaatgagacaagtgttggaagataaaatattatagaaattggaa-ttgttgaccttttaaactcac |
6504801 |
T |
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| Q |
111 |
accttgtaggaaacacccttcaaaaagaatccgtgggaaacatgttatcnnnnnnnnaaggaaggagtcacagtaatatgaa |
192 |
Q |
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| T |
6504802 |
accttgtaggaaacatccttaaaaaagaatccgtggaaaacatgttatctttttttt-aggaaggagtcacagtaatatgaa |
6504882 |
T |
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Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 275
Target Start/End: Original strand, 6504919 - 6505000
Alignment:
| Q |
194 |
tttccacactaataggattcgagttcgataagatccatcataatgacaatttattaactatttgggttaaatcacttggtta |
275 |
Q |
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| T |
6504919 |
tttccacactaataggattcgagtttgataagatccatcataatgacaatttattaatcatttgagttaaatcacttggtta |
6505000 |
T |
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