View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3575_low_13 (Length: 251)
Name: NF3575_low_13
Description: NF3575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3575_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 11 - 237
Target Start/End: Original strand, 43040471 - 43040675
Alignment:
| Q |
11 |
cataggaggtgaaaagtgcatttaagcctatatattatgcttaagtcttttat-tgttattcttttttacctggtgtataannnnnnnncaattatcgta |
109 |
Q |
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| T |
43040471 |
cataggaagtgaaaagtgcatttaagcctatatattatgcttaagtcttttctgtgttattcttttttacctggtgtataattttttttcaattatcgta |
43040570 |
T |
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| Q |
110 |
ttcaaaaaggtcggatgagtaaggtttctgattgtatgtctttctgcagactcattgtatgtctctctgcagactcacttggagtccaaggaaggaaagt |
209 |
Q |
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| T |
43040571 |
ttcaaaaaggtcggatgagtaagg----------------tttctg-------attgtatgtctctctgcagactcacatggagtccaaggaaggaaagt |
43040647 |
T |
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| Q |
210 |
tcaagctgctggaatagatggttgtagt |
237 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
43040648 |
tcaagctgctggaatagatggttgtagt |
43040675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 43028072 - 43028146
Alignment:
| Q |
163 |
attgtatgtctctctgcagactcacttggagtccaaggaaggaaagttcaagctgctggaatagatggttgtagt |
237 |
Q |
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| T |
43028072 |
attgtatgtctctctgcagactcacttggagtccaaggaaggaaagttcaagctgctggaatagatggttgtagt |
43028146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 43028034 - 43028095
Alignment:
| Q |
102 |
ttatcgtattcaaaaaggtcggatgagtaaggtttctgattgtatgtctttctgcagactca |
163 |
Q |
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| T |
43028034 |
ttatcttattaaaaatggtcagacgagtaaggtttctgattgtatgtctctctgcagactca |
43028095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 27453562 - 27453595
Alignment:
| Q |
11 |
cataggaggtgaaaagtgcatttaagcctatata |
44 |
Q |
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| T |
27453562 |
catagggggtgaaaagtgcatttaagcctatata |
27453595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 13828721 - 13828684
Alignment:
| Q |
11 |
cataggaggtgaaaagtgcatttaagcctatatattat |
48 |
Q |
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|||||| ||||||||||||||||||||||| ||||||| |
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| T |
13828721 |
catagggggtgaaaagtgcatttaagcctaaatattat |
13828684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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